NO11G02460.1, NO11G02460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02460.1
Unique NameNO11G02460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2317
Alignment locationchr11:781565..784155 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:781565..784155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02460.1 vs.
Match: XP_005855254.1 (pre-mrna-splicing regulator female-lethal d [Nannochloropsis gaditana CCMP526]; EKU21111.1 pre-mrna-splicing regulator female-lethal d [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 282.7 bits (722), Expect = 1.200e-72
Identity = 173/284 (60.92%), Postives = 200/284 (70.42%), Query Frame = 0 
Query:    1 MPSGKKAAVLTAFGCREEEEEEEEDEALPEVYVKNATSSDPDTKPILSQPSTSSSISSKSSKKGRATVLPSPPSLPTDVPALQQALLSAEGRLVGFQAREQAYLRILTEKEKETADLKRHLRELAVFQSPPEAWARTALVDPGVGMELRLLRDKISELERSEKILKEDAQAHHFSTESATGEALLNKCRKLQQENEVLAMRL--EKEGGKEGGREEELKLQIVDLQKALEESQARVEDLDEERGLLSTMLYALKKQLMAATSTSALMVGGEEGGGDGKGMEVET 283
            M S K    L A    +++EE EEDE LPE+Y K A SS PD +P+L    T+SS+  K +       +P+PPSLPTDVP LQ+ALLSAEGRLVGFQ REQ Y+  L EK+ E  +L RH++EL VFQSPPEAW R  LVDPGV MELRLLR+KI+ELE SEKILKEDAQA HFS ESATGEALLNKCR+LQQENE LA RL   ++G  E G E   + QI  LQ+ LEES+AR EDLDEERGLLSTM+YALKKQL AA         G + G    GM VET
Sbjct:    1 MTSHKNTVALAALSA-DDDEEAEEDEELPEIYYKAARSSTPDIQPVL----TASSVPRKDA-------IPAPPSLPTDVPTLQKALLSAEGRLVGFQNREQVYVHQLQEKDAEILELHRHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASEKILKEDAQARHFSAESATGEALLNKCRRLQQENESLARRLGEMEKGTGEDGLEGAFRKQIAILQEQLEESKARAEDLDEERGLLSTMVYALKKQLAAA---------GVDDGEGSTGMAVET 263
The following BLAST results are available for this feature:
BLAST of NO11G02460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855254.11.200e-7260.92pre-mrna-splicing regulator female-lethal d [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02460NO11G02460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02460.1NO11G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02460.1.cds1NO11G02460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02460.1.cds2NO11G02460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02460.1 ID=NO11G02460.1|Name=NO11G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2317bp
CTCCCTCCCTCCCTCCCTCCCTCTACCTCTCGCACCATCACCATCGGAAA
CAACACCTGCAGATTCCTCACTGCCGACTCCGTGGCCGCCACCAATCTTC
GGCACATATCGAGCACCTCGGCAGAAGGACGAGGATGAGCAGCAGCACTA
GCAGCACCACCATGTGTCTTCAGTCGTGGTTGTTGCGCGAAGGTCGACAA
GCGTTGACTTTCTCCTTGAACCCTCGCCAAGGCTTGTCTCAAGCGGATCA
ACATTGTGCTCGCGTCTTGCTGAAGGCGTTGAGGGGTGGCAGTCGAGATT
TTACTGGCCGTGCCACTAAGCTTGGCTGGAGGCTTAGGCTTGCGTGCTGG
GGTGGTGGGGTTAGAAGCAGCGCAAGAGAGGGTGGTGGCAGCGGCGGAGA
TGGTCGACGCAACTGGCTTGGCAAGGAAGCTGCTGCTGCTGCCAGTCCTG
CTGCTACTGCTGCTGCTCAAAATTGTGGTGTTAAAGGCATGGGCGACGTT
TTCCTCATTCCCGGAAGCTGGATCGGGGGCTGGCTTGCGGTGTTGTTGGC
GGGAGGATCGGTGGAAGGGGAGACGTGGCTCCTCCCGGGCAGGAGGGCCA
TGGTTCTCATCGTAGTGGTCCTGTTGCTTTTGATGCGCCGCCAGCCGAGA
AATGACGGCCAAGGACTCCCGGCGTCGTTGCGGCTGGGATTGCTTGAGAA
TGCTCTTGGTCGTGGCTGATGTGCTGGTGCCGTTAATAGCGATGGGCATC
AGGCCACCTCGCAACGAAGAGGACACGGAGGCCCCCGGTGCCATCGACGC
TCTCCGCCGGGGCGCACCACCAACGCTGGGGCGCATGGCAGGTGGCTCCA
TGCTAGCTCGCAAAGGGTGTGACGATGCCCCTGTGTTTCCGTGTGTTGTG
TATTGTGTGTTGCAGGGTGATGAGAAGGGCGAGGGGACCTTAGCTTTTGC
TCGATGGAGAGAGCGGCTTGTGGCACCCACGATGGGGTTTGGAGCTGTGC
GTAGGCCTACAGTAGCTGTATAGAGAGATTATGCATCTCTCTGTGCCTGT
AAAGGGGGTGTCGATCGGTCGGTTGAGGCGTGAAGGATGGTTTATATTGA
GGGAGGGAACAGGCAGCAACGGGCCAATTCGTATCGAGTTTTGGCGGCAA
CAAGAAGGAACCTTATCTCAAGAAACATCCTATCTCACATGTGTGTCTCT
TGCCCTCACACCCGCCTTTTCCTACAGATGCAGACAGGCAGCATGGCAAT
AATATAGTCGCCCGAGAGCTTTGATGCGGCCGCAGTTCCGTTGTCGAGGC
TGCATGACACCTAATGTAGTACTTCTGACTTAACTCCCTCTATCGACCTC
CTCACCCTCCCTCCCACAGGACAGGAAAAGAAGAAGTAAAACAATGCCCA
GTGGCAAGAAAGCGGCAGTGTTGACAGCCTTTGGCTGCAGAGAGGAGGAG
GAAGAAGAGGAAGAGGACGAAGCGCTGCCGGAAGTCTACGTCAAGAACGC
CACATCCTCCGACCCAGATACCAAACCCATCCTCTCTCAACCCAGCACAA
GCAGCAGCATCTCGTCAAAGAGCAGCAAGAAAGGCAGAGCAACAGTCCTC
CCCTCTCCTCCCTCCCTCCCTACCGACGTCCCCGCCTTGCAGCAAGCTCT
GCTTAGCGCCGAAGGCCGCTTGGTAGGTTTCCAAGCCCGCGAACAAGCGT
ACCTTCGCATCCTCACAGAGAAAGAAAAGGAGACGGCCGATTTGAAAAGG
CATCTGCGAGAACTTGCCGTCTTCCAGAGTCCTCCCGAGGCTTGGGCACG
TACAGCCCTCGTCGACCCCGGGGTAGGCATGGAGCTTCGCTTGCTACGCG
ATAAAATCTCTGAATTGGAACGTTCGGAGAAAATTCTGAAAGAAGACGCT
CAAGCCCATCATTTCTCCACGGAAAGCGCAACGGGCGAGGCCCTCCTAAA
CAAGTGTCGAAAACTCCAGCAGGAAAACGAGGTTTTGGCCATGCGCTTGG
AGAAAGAGGGGGGAAAGGAGGGAGGGCGGGAGGAGGAGTTAAAGCTGCAA
ATAGTGGACTTGCAGAAGGCATTAGAGGAGAGTCAGGCACGGGTCGAGGA
CTTGGATGAGGAGAGAGGGCTGTTGAGCACGATGTTGTACGCATTGAAGA
AGCAATTAATGGCGGCCACGTCGACGTCTGCTTTGATGGTAGGAGGGGAA
GAAGGGGGAGGGGACGGAAAGGGGATGGAGGTTGAGACGGGGTGACTGAG
CTCGGAGGGAGCTTGACGGAGATGGAGATGGAGGCAAAGAAATAAATGGA
AACAATGCGAATGCGTG
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protein sequence of NO11G02460.1

>NO11G02460.1-protein ID=NO11G02460.1-protein|Name=NO11G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MPSGKKAAVLTAFGCREEEEEEEEDEALPEVYVKNATSSDPDTKPILSQP
STSSSISSKSSKKGRATVLPSPPSLPTDVPALQQALLSAEGRLVGFQARE
QAYLRILTEKEKETADLKRHLRELAVFQSPPEAWARTALVDPGVGMELRL
LRDKISELERSEKILKEDAQAHHFSTESATGEALLNKCRKLQQENEVLAM
RLEKEGGKEGGREEELKLQIVDLQKALEESQARVEDLDEERGLLSTMLYA
LKKQLMAATSTSALMVGGEEGGGDGKGMEVETG*
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mRNA from alignment at chr11:781565..784155+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02460.1 ID=NO11G02460.1|Name=NO11G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2591bp|location=Sequence derived from alignment at chr11:781565..784155+ (Nannochloropsis oceanica)
CTCCCTCCCTCCCTCCCTCCCTCTACCTCTCGCACCATCACCATCGGAAA
CAACACCTGCAGATTCCTCACTGCCGACTCCGTGGCCGCCACCAATCTTC
GGCACATATCGAGCACCTCGGCAGAAGGACGAGGATGAGCAGCAGCACTA
GCAGCACCACCATGTGTCTTCAGTCGTGGTTGTTGCGCGAAGGTCGACAA
GCGTTGACTTTCTCCTTGAACCCTCGCCAAGGCTTGTCTCAAGCGGATCA
ACATTGTGCTCGCGTCTTGCTGAAGGCGTTGAGGGGTGGCAGTCGAGATT
TTACTGGCCGTGCCACTAAGCTTGGCTGGAGGCTTAGGCTTGCGTGCTGG
GGTGGTGGGGTTAGAAGCAGCGCAAGAGAGGGTGGTGGCAGCGGCGGAGA
TGGTCGACGCAACTGGCTTGGCAAGGAAGCTGCTGCTGCTGCCAGTCCTG
CTGCTACTGCTGCTGCTCAAAATTGTGGTGTTAAAGGCATGGGCGACGTT
TTCCTCATTCCCGGAAGCTGGATCGGGGGCTGGCTTGCGGTGTTGTTGGC
GGGAGGATCGGTGGAAGGGGAGACGTGGCTCCTCCCGGGCAGGAGGGCCA
TGGTTCTCATCGTAGTGGTCCTGTTGCTTTTGATGCGCCGCCAGCCGAGA
AATGACGGCCAAGGACTCCCGGCGTCGTTGCGGCTGGGATTGCTTGAGAA
TGCTCTTGGTCGTGGCTGATGTGCTGGTGCCGTTAATAGCGATGGGCATC
AGGCCACCTCGCAACGAAGAGGACACGGAGGCCCCCGGTGCCATCGACGC
TCTCCGCCGGGGCGCACCACCAACGCTGGGGCGCATGGCAGGTGGCTCCA
TGCTAGCTCGCAAAGGGTGTGACGATGCCCCTGTGTTTCCGTGTGTTGTG
TATTGTGTGTTGCAGGGTGATGAGAAGGGCGAGGGGACCTTAGCTTTTGC
TCGATGGAGAGAGCGGCTTGTGGCACCCACGATGGGGTTTGGAGCTGTGC
GTAGGCCTACAGTAGCTGTATAGAGAGATTATGCATCTCTCTGTGCCTGT
AAAGGGGGTGTCGATCGGTCGGTTGAGGCGTGAAGGATGGTTTATATTGA
GGGAGGGAACAGGCAGCAACGGGCCAATTCGTATCGAGTTTTGGCGGCAA
CAAGAAGGAACCTTATCTCAAGAAACATCCTATCTCACATGTGTGTCTCT
TGCCCTCACACCCGCCTTTTCCTACAGATGCAGACAGGCAGCATGGCAAT
AATATAGTCGCCCGAGAGCTTTGATGCGGCCGCAGTTCCGTTGTCGAGGC
TGCATGACACCTAATGTAGTACTTCTGACTTAACTCCCTCTATCGACCTC
CTCACCCTCCCTCCCACAGGACAGGAAAAGAAGAAGTAAAACAATGCCCA
GTGGCAAGAAAGCGGCAGTGTTGACAGCCTTTGGCTGCAGAGAGGAGGAG
GAAGAAGAGGAAGAGGACGAAGCGCTGCCGGTACGTACATTGGCGTAATG
TCATCGAGGCGTTGAAGGGAGTGCATGAGGATGCGTGAAATGAGGCCCGG
CCGGGACCTTGTCCCTCTGTGTCACCAACCAAAATGCTTCCGAAGCTCAC
CTTTCTTCAAATGGAGAGAATGGCATTTCTTACGCTGATCGGCAAGGAGC
TCCACCCCAAGGAGCTCCCCTAGCTAGTGCTTCCCCTACTCACACCATCC
GCTTCCCTTTCCCTCCTTCATTCCTCCCAACCCCCACTGCCACAAAATGT
ACAGGAAGTCTACGTCAAGAACGCCACATCCTCCGACCCAGATACCAAAC
CCATCCTCTCTCAACCCAGCACAAGCAGCAGCATCTCGTCAAAGAGCAGC
AAGAAAGGCAGAGCAACAGTCCTCCCCTCTCCTCCCTCCCTCCCTACCGA
CGTCCCCGCCTTGCAGCAAGCTCTGCTTAGCGCCGAAGGCCGCTTGGTAG
GTTTCCAAGCCCGCGAACAAGCGTACCTTCGCATCCTCACAGAGAAAGAA
AAGGAGACGGCCGATTTGAAAAGGCATCTGCGAGAACTTGCCGTCTTCCA
GAGTCCTCCCGAGGCTTGGGCACGTACAGCCCTCGTCGACCCCGGGGTAG
GCATGGAGCTTCGCTTGCTACGCGATAAAATCTCTGAATTGGAACGTTCG
GAGAAAATTCTGAAAGAAGACGCTCAAGCCCATCATTTCTCCACGGAAAG
CGCAACGGGCGAGGCCCTCCTAAACAAGTGTCGAAAACTCCAGCAGGAAA
ACGAGGTTTTGGCCATGCGCTTGGAGAAAGAGGGGGGAAAGGAGGGAGGG
CGGGAGGAGGAGTTAAAGCTGCAAATAGTGGACTTGCAGAAGGCATTAGA
GGAGAGTCAGGCACGGGTCGAGGACTTGGATGAGGAGAGAGGGCTGTTGA
GCACGATGTTGTACGCATTGAAGAAGCAATTAATGGCGGCCACGTCGACG
TCTGCTTTGATGGTAGGAGGGGAAGAAGGGGGAGGGGACGGAAAGGGGAT
GGAGGTTGAGACGGGGTGACTGAGCTCGGAGGGAGCTTGACGGAGATGGA
GATGGAGGCAAAGAAATAAATGGAAACAATGCGAATGCGTG
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Coding sequence (CDS) from alignment at chr11:781565..784155+

>NO11G02460.1 ID=NO11G02460.1|Name=NO11G02460.1|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at chr11:781565..784155+ (Nannochloropsis oceanica)
ATGCCCAGTGGCAAGAAAGCGGCAGTGTTGACAGCCTTTGGCTGCAGAGA
GGAGGAGGAAGAAGAGGAAGAGGACGAAGCGCTGCCGGAAGTCTACGTCA
AGAACGCCACATCCTCCGACCCAGATACCAAACCCATCCTCTCTCAACCC
AGCACAAGCAGCAGCATCTCGTCAAAGAGCAGCAAGAAAGGCAGAGCAAC
AGTCCTCCCCTCTCCTCCCTCCCTCCCTACCGACGTCCCCGCCTTGCAGC
AAGCTCTGCTTAGCGCCGAAGGCCGCTTGGTAGGTTTCCAAGCCCGCGAA
CAAGCGTACCTTCGCATCCTCACAGAGAAAGAAAAGGAGACGGCCGATTT
GAAAAGGCATCTGCGAGAACTTGCCGTCTTCCAGAGTCCTCCCGAGGCTT
GGGCACGTACAGCCCTCGTCGACCCCGGGGTAGGCATGGAGCTTCGCTTG
CTACGCGATAAAATCTCTGAATTGGAACGTTCGGAGAAAATTCTGAAAGA
AGACGCTCAAGCCCATCATTTCTCCACGGAAAGCGCAACGGGCGAGGCCC
TCCTAAACAAGTGTCGAAAACTCCAGCAGGAAAACGAGGTTTTGGCCATG
CGCTTGGAGAAAGAGGGGGGAAAGGAGGGAGGGCGGGAGGAGGAGTTAAA
GCTGCAAATAGTGGACTTGCAGAAGGCATTAGAGGAGAGTCAGGCACGGG
TCGAGGACTTGGATGAGGAGAGAGGGCTGTTGAGCACGATGTTGTACGCA
TTGAAGAAGCAATTAATGGCGGCCACGTCGACGTCTGCTTTGATGGTAGG
AGGGGAAGAAGGGGGAGGGGACGGAAAGGGGATGGAGGTTGAGACGGGGT
GA
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Synonyms
Publications