NO11G02160.1, NO11G02160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02160.1
Unique NameNO11G02160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2146
Alignment locationchr11:698695..701586 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:698695..701586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02160.1 vs.
Match: EWM25010.1 (dnaj subfamily c member 3 protein [Nannochloropsis gaditana])

HSP 1 Score: 675.6 bits (1742), Expect = 1.200e-190
Identity = 363/519 (69.94%), Postives = 416/519 (80.15%), Query Frame = 0 
Query:    9 SASSIRRRGDSSSRARVAAALSPSWLQLTFLLLLSLVWPANGQEAAAAAPNAAKLRSQADVAFATGKLDEAIKILSQAIQLEPDSEKNHYKRYRAYLRGKKYKEALQDLSTSLNLDPKNGPKMHQRAKLFKMLGRCGDAVEEYEKLQLHQQQQEEQQEGEPQAKEVEEGLTEARQCKQSTEEAELLIEGGEWGRARQLLDAAVSLTEVSPELLLRRAKCHFELGDFYGAAADTGRAIKLDGSSVPALELRGFSYYKLGEFEMAQTHFREGLKYDPEHKGCKDGHKKVKKMTKAVEKGRKAVDVGDLEGGVKYFREALGVDPEHVFFNAPVMLDVARVHVKGKSWKEAREVVDQAIALTGGGLSDCYIVLSDVLQAQEEYEEAVRILRKAAEQFQEDNGVSEALQKAEIALKQSKEVNYYKVLGVDRRATTAEVKKAYRNMAKIYHPDKQSDASPEEKEKAEREFLKIAQAYEVLSDEEIRAKYDRGEDVSGQAQQAQHHNPFGAGGPFGGGQHFTFRFH 528
            SA+  RRR  S +R+R  +     W+     LLLSLV P +GQ+   A  N  KLR+ AD AFATG LD+AIK LSQAIQ+EP++EKNHYKRYRA+LRGKKY+EALQDLSTSL LDP N  KM QRAKLFKM+GRC DAV EYEKL+       E   G     E+ EG  EARQC+ S  EAE L+E G+W  ARQ LD AV+LTEV+PELLLRRA+C+FE  DFY AAADTGRAIKLDGSS+PALELRG +YYKLGEF+MAQTHFREGLK+DPEH GCK+GH++VKKM KA EKGRKAVDVGD+  GV Y +EA+ VDP HV+FNAP++L +AR H+   S+  AR+ VD A+ +    LS+ +IVLSD+LQAQEEYEEAVR+L+ AAE F ED  V EAL+KAEIALKQSKEVNYYKVLGVDRRATT+ +KKAYRNMAKIYHPDKQ++ASPEEKEKAEREFLKIAQAYEVLSDEE RAKYDRGEDVSGQAQQA HHNPFG GGPFGGGQHFTF FH
Sbjct:   11 SAAFNRRRPPSINRSRFPSV----WVHFCLFLLLSLVRPVSGQDQTGAVLNPGKLRASADEAFATGDLDKAIKFLSQAIQIEPENEKNHYKRYRAHLRGKKYREALQDLSTSLQLDPLNAAKMQQRAKLFKMMGRCADAVGEYEKLE----GMLETGAGGVTEGEMGEGAREARQCQHSLAEAERLMEMGDWRAARQHLDVAVTLTEVAPELLLRRARCNFEEKDFYSAAADTGRAIKLDGSSIPALELRGLAYYKLGEFDMAQTHFREGLKFDPEHLGCKEGHRRVKKMQKAAEKGRKAVDVGDVAQGVGYLQEAMAVDPSHVYFNAPILLQIARAHMGVASFAPARQAVDSAMQMNPR-LSEAHIVLSDLLQAQEEYEEAVRVLKSAAEAFAEDASVQEALKKAEIALKQSKEVNYYKVLGVDRRATTSAIKKAYRNMAKIYHPDKQAEASPEEKEKAEREFLKIAQAYEVLSDEETRAKYDRGEDVSGQAQQAHHHNPFGGGGPFGGGQHFTFHFH 520
The following BLAST results are available for this feature:
BLAST of NO11G02160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25010.11.200e-19069.94dnaj subfamily c member 3 protein [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02160NO11G02160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02160.1NO11G02160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02160.1.cds1NO11G02160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02160.1.cds2NO11G02160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02160.1.cds3NO11G02160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02160.1.cds4NO11G02160.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02160.1 ID=NO11G02160.1|Name=NO11G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2146bp
AGGATCAAGGGGAACCCACACTGTTGCACACCGCCGCCGGGACTACGAGA
TCTCCCTGCGGCCGACAAGCACCTAACACCACCAGCAAGAACCGCGGCCC
ACGCGGTTGAAGACCTGCTCAAGACTAGTATCATGAGCTCCGATTCTTCT
AATTTCTCAGCATCGAGCATCAGAAGACGAGGAGACTCGTCATCCCGTGC
TCGCGTAGCTGCTGCATTATCACCATCGTGGCTGCAGCTAACCTTCCTCC
TGCTCCTTTCCTTGGTTTGGCCCGCAAATGGTCAAGAGGCCGCAGCGGCG
GCCCCCAACGCTGCCAAACTCCGTTCGCAGGCTGATGTGGCCTTTGCTAC
CGGCAAACTAGACGAGGCCATCAAAATCCTCTCCCAAGCCATCCAACTTG
AACCAGACAGCGAAAAGAATCACTACAAACGTTACCGTGCCTACTTGCGT
GGAAAGAAGTACAAGGAAGCTCTGCAAGACCTGAGCACTTCTCTTAACCT
CGACCCCAAGAATGGCCCAAAAATGCATCAGCGAGCCAAGCTGTTCAAGA
TGTTGGGGAGGTGCGGCGATGCCGTAGAAGAGTACGAGAAACTGCAGCTG
CATCAGCAGCAGCAGGAAGAGCAGCAGGAGGGGGAGCCACAGGCGAAGGA
GGTGGAGGAAGGGCTGACGGAGGCGAGACAGTGTAAGCAGAGCACGGAAG
AGGCGGAGCTCTTGATAGAGGGGGGAGAGTGGGGGAGGGCACGACAGCTT
TTAGATGCCGCCGTCAGTCTCACTGAAGTGTCCCCCGAGCTGTTGCTGAG
ACGCGCGAAGTGTCATTTTGAACTAGGAGATTTCTACGGGGCTGCGGCTG
ATACAGGGCGAGCCATCAAGCTTGACGGAAGCAGCGTCCCGGCTTTGGAA
CTTCGAGGATTTTCTTACTATAAGCTAGGCGAATTCGAGATGGCCCAGAC
ACATTTCCGCGAAGGTTTGAAATACGACCCTGAGCACAAAGGGTGTAAGG
ACGGGCATAAGAAGGTAAAGAAAATGACGAAGGCCGTGGAAAAAGGGCGG
AAGGCTGTGGATGTGGGGGATCTCGAAGGAGGGGTGAAGTATTTCAGGGA
GGCTTTGGGTGTGGACCCAGAGCACGTATTTTTCAATGCGCCGGTAATGT
TGGATGTGGCACGCGTGCATGTGAAGGGAAAGAGTTGGAAGGAGGCGAGG
GAGGTGGTGGACCAGGCCATCGCGCTGACGGGGGGGGGATTGAGTGACTG
TTACATTGTCTTGAGCGACGTGTTGCAGGCGCAGGAAGAGTATGAAGAGG
CGGTACGGATATTGAGGAAAGCAGCCGAGCAGTTTCAGGAGGATAATGGC
GTGTCGGAGGCGTTGCAGAAGGCGGAGATTGCGTTGAAGCAGAGTAAGGA
GGTGAACTATTACAAGGTCTTGGGGGTGGACAGACGGGCAACAACGGCAG
AGGTCAAGAAGGCGTATCGCAATATGGCCAAGATTTACCACCCGGACAAG
CAATCGGACGCGAGCCCCGAGGAGAAGGAGAAGGCCGAGCGGGAGTTCTT
GAAGATTGCTCAGGCTTACGAGGTGCTCAGCGACGAGGAGATCCGCGCGA
AATACGACCGAGGAGAGGACGTTTCTGGCCAGGCACAACAAGCGCAGCAC
CACAACCCGTTTGGGGCGGGGGGTCCATTCGGAGGGGGGCAACATTTCAC
TTTTAGGTTTCATTAGGCCGTGAAGGGAAAGAGGGAAGGAGGGAGAGAGT
GACTGAGCGAGAGGATTGCAAAATAGAAAGCTCTTTCTTTTGAAAGAAGA
GTGTATCGCAAAAATCTTTAGAAAGAGTAGAGTACACATACAAGAGGAGC
GGGTGGTAGCAGCAGCGGCGGCGGCGGATGGCCATAAAAGGAAAGAGAAT
GGAGGGGAGAATTTCCAATATACACACAGAAAAAGTACGTAAAAACATTC
ACGCAATGGTAGAGCATTAGCAGCGGCATCAGCGACAGCGCTTGGGGAGG
GGCACGCAGTGTGGAGCGCGCAATTTGTTCACGAGGAAAATTCTACCAGC
ATGAGCTAGGAGATAACGTCGAAATATCGAAGGAAAAGCGGACACACGAG
GAAAATCCGACGAGCGAAGATGAACAAAAACGACTGAAATAAATAG
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protein sequence of NO11G02160.1

>NO11G02160.1-protein ID=NO11G02160.1-protein|Name=NO11G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=528bp
MSSDSSNFSASSIRRRGDSSSRARVAAALSPSWLQLTFLLLLSLVWPANG
QEAAAAAPNAAKLRSQADVAFATGKLDEAIKILSQAIQLEPDSEKNHYKR
YRAYLRGKKYKEALQDLSTSLNLDPKNGPKMHQRAKLFKMLGRCGDAVEE
YEKLQLHQQQQEEQQEGEPQAKEVEEGLTEARQCKQSTEEAELLIEGGEW
GRARQLLDAAVSLTEVSPELLLRRAKCHFELGDFYGAAADTGRAIKLDGS
SVPALELRGFSYYKLGEFEMAQTHFREGLKYDPEHKGCKDGHKKVKKMTK
AVEKGRKAVDVGDLEGGVKYFREALGVDPEHVFFNAPVMLDVARVHVKGK
SWKEAREVVDQAIALTGGGLSDCYIVLSDVLQAQEEYEEAVRILRKAAEQ
FQEDNGVSEALQKAEIALKQSKEVNYYKVLGVDRRATTAEVKKAYRNMAK
IYHPDKQSDASPEEKEKAEREFLKIAQAYEVLSDEEIRAKYDRGEDVSGQ
AQQAQHHNPFGAGGPFGGGQHFTFRFH*
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mRNA from alignment at chr11:698695..701586+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02160.1 ID=NO11G02160.1|Name=NO11G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2892bp|location=Sequence derived from alignment at chr11:698695..701586+ (Nannochloropsis oceanica)
AGGATCAAGGGGAACCCACACTGTTGCACACCGCCGCCGGGACTACGAGA
TCTCCCTGCGGCCGACAAGCACCTAACACCACCAGCAAGAACCGCGGCCC
ACGCGGTTGAAGACCTGCTCAAGACTAGTATCATGAGCTCCGATTCTTCT
AATTTCTCAGCATCGAGCATCAGAAGACGAGGAGACTCGTCATCCCGTGC
TCGCGTAGCTGCTGCATTATCACCATCGTGGCTGCAGCTAACCTTCCTCC
TGCTCCTTTCCTTGGTTTGGCCCGCAAATGGTCAAGAGGCCGCAGCGGCG
GCCCCCAACGCTGCCAAACTCCGTTCGCAGGCTGATGTGGCCTTTGCTAC
CGGGTAGGAGGACGAGAAAGCGCGGGAGGGAGGGGGGAAGCAGAAATATA
AGACGAAGTATAACACGAGGTGGCTGGGGTTTCTTTCTTGTCAGGTGCAT
GTGTACACCAGTTGTGGAAAGACACCTTTGTTGTTGCACATCTCAGCCTC
AACATCGTACTTATCTCTCCCGACACCTGACCAGACACTTCCAACCAAAA
AAACTCTCACCCCTTTCTCCTGCCCTCCCACTCTCCCCCCTCCCCAGCAA
ACTAGACGAGGCCATCAAAATCCTCTCCCAAGCCATCCAACTTGAACCAG
ACAGCGAAAAGAATCACTACAAACGTTACCGTGCCTACTTGCGTGGAAAG
AAGTACAAGGAAGCTCTGCAAGACCTGAGCACTTCTCTTAACCTCGACCC
CAAGAATGGCCCAAAAATGCATCAGCGAGCCAAGCTGTTCAAGATGTTGG
GGAGGTGCGGCGATGCCGTAGAAGAGTACGAGAAACTGCAGCTGCATCAG
CAGCAGCAGGAAGAGCAGCAGGAGGGGGAGCCACAGGCGAAGGAGGTGGA
GGAAGGGCTGACGGAGGCGAGACAGTGTAAGCAGAGCACGGAAGAGGCGG
AGCTCTTGATAGAGGGGGGAGAGTGGGGGAGGGCACGACAGCTTTTAGAT
GCCGCCGTCAGTCTCACTGAAGTGTCCCCCGAGCTGTTGCTGAGACGCGC
GAAGTGTCATTTTGAACTAGGAGATTTCTACGGGGCTGCGGCTGATACAG
GGCGAGCCATCAAGCTTGACGGAAGCAGCGTCCCGGCTTTGGAACTTCGA
GGATTTTCTTACTATAAGCTAGGCGAATTCGAGATGGCCCAGACACATTT
CCGCGAAGGTTTGAAATACGACCCTGAGCACAAAGGGTGTAAGGACGGGC
ATAAGAAGGTAAAGAAAATGACGAAGGCCGTGGAAAAAGGGCGGAAGGCT
GTGGATGTGGGGGATCTCGAAGGAGGGGTGAAGTATTTCAGGGAGGCTTT
GGGTGTGGACCCAGAGCACGTATTTTTCAATGCGCCGGTAATGTTGGATG
TGGCACGCGTGCATGTGAAGGGAAAGAGTTGGAAGGAGGCGAGGGAGGTG
GTGGACCAGGCCATCGCGCTGACGGGGGGGGGATTGAGTGACTGTTACAT
TGTCTTGAGCGACGTGTTGCAGGCGCAGGAAGAGTATGAAGAGGCGGTAC
GGATATTGAGGAAAGCAGCCGAGCAGTTTCAGGAGGATAATGGCGTGTCG
GAGGCGTTGCAGAAGGCGGAGATTGCGTTGAAGCAGAGTAAGGAGGTGAA
CTATTACAAGGTCTTGGGGGTGGACAGACGGGCAACAACGGCAGAGGTCA
AGAAGGTGAGTTATTTATTATGGATCTATTATTCACTCATTTTCAGTTCG
TATATTTTTCGGTAATCTGGCTTTGTATTTTTGGGTGGGATAAGAGCTGT
GTGTGTGTGTACGTGTACGTGTACGTGTACGTGTACGTGTGTGTGTACGT
GTACGTGTGTGTGTACGTGTGTACGTGTGTACGTGTACGTGTGTACGTGT
ACGTATGGCCTTGTTTTCATTCCGCAAAGAAGTATTCTTGTACGTCCACC
TTGATCCGTGTGCCCATTCCTCCCTCCCTTCCTCCCTTCTTTCCTTCCCT
ATCCGCAGGCGTATCGCAATATGGCCAAGATTTACCACCCGGACAAGCAA
TCGGACGCGAGCCCCGAGGAGAAGGAGAAGGCCGAGCGGGAGTTCTTGAA
GATTGCTCAGGCTTACGAGGTGCGTCACTCTTTCATGTTTGTTCACGGAT
TATATTTTTGATTGGGGTTATTTGAAATGCAACAAGGGCAAATATGGCGG
TGACAGTCGCAGTAGCAGCAGCAAAAGCAGCAGTAGGAGCCGTAGACGAG
CATATCCTTCACATATACTCAATTACTTACTTCCCTCTGTTCTCCTTTCC
CTCTTTCCACTTTTCCAGGTGCTCAGCGACGAGGAGATCCGCGCGAAATA
CGACCGAGGAGAGGACGTTTCTGGCCAGGCACAACAAGCGCAGCACCACA
ACCCGTTTGGGGCGGGGGGTCCATTCGGAGGGGGGCAACATTTCACTTTT
AGGTTTCATTAGGCCGTGAAGGGAAAGAGGGAAGGAGGGAGAGAGTGACT
GAGCGAGAGGATTGCAAAATAGAAAGCTCTTTCTTTTGAAAGAAGAGTGT
ATCGCAAAAATCTTTAGAAAGAGTAGAGTACACATACAAGAGGAGCGGGT
GGTAGCAGCAGCGGCGGCGGCGGATGGCCATAAAAGGAAAGAGAATGGAG
GGGAGAATTTCCAATATACACACAGAAAAAGTACGTAAAAACATTCACGC
AATGGTAGAGCATTAGCAGCGGCATCAGCGACAGCGCTTGGGGAGGGGCA
CGCAGTGTGGAGCGCGCAATTTGTTCACGAGGAAAATTCTACCAGCATGA
GCTAGGAGATAACGTCGAAATATCGAAGGAAAAGCGGACACACGAGGAAA
ATCCGACGAGCGAAGATGAACAAAAACGACTGAAATAAATAG
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Coding sequence (CDS) from alignment at chr11:698695..701586+

>NO11G02160.1 ID=NO11G02160.1|Name=NO11G02160.1|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at chr11:698695..701586+ (Nannochloropsis oceanica)
ATGAGCTCCGATTCTTCTAATTTCTCAGCATCGAGCATCAGAAGACGAGG
AGACTCGTCATCCCGTGCTCGCGTAGCTGCTGCATTATCACCATCGTGGC
TGCAGCTAACCTTCCTCCTGCTCCTTTCCTTGGTTTGGCCCGCAAATGGT
CAAGAGGCCGCAGCGGCGGCCCCCAACGCTGCCAAACTCCGTTCGCAGGC
TGATGTGGCCTTTGCTACCGGCAAACTAGACGAGGCCATCAAAATCCTCT
CCCAAGCCATCCAACTTGAACCAGACAGCGAAAAGAATCACTACAAACGT
TACCGTGCCTACTTGCGTGGAAAGAAGTACAAGGAAGCTCTGCAAGACCT
GAGCACTTCTCTTAACCTCGACCCCAAGAATGGCCCAAAAATGCATCAGC
GAGCCAAGCTGTTCAAGATGTTGGGGAGGTGCGGCGATGCCGTAGAAGAG
TACGAGAAACTGCAGCTGCATCAGCAGCAGCAGGAAGAGCAGCAGGAGGG
GGAGCCACAGGCGAAGGAGGTGGAGGAAGGGCTGACGGAGGCGAGACAGT
GTAAGCAGAGCACGGAAGAGGCGGAGCTCTTGATAGAGGGGGGAGAGTGG
GGGAGGGCACGACAGCTTTTAGATGCCGCCGTCAGTCTCACTGAAGTGTC
CCCCGAGCTGTTGCTGAGACGCGCGAAGTGTCATTTTGAACTAGGAGATT
TCTACGGGGCTGCGGCTGATACAGGGCGAGCCATCAAGCTTGACGGAAGC
AGCGTCCCGGCTTTGGAACTTCGAGGATTTTCTTACTATAAGCTAGGCGA
ATTCGAGATGGCCCAGACACATTTCCGCGAAGGTTTGAAATACGACCCTG
AGCACAAAGGGTGTAAGGACGGGCATAAGAAGGTAAAGAAAATGACGAAG
GCCGTGGAAAAAGGGCGGAAGGCTGTGGATGTGGGGGATCTCGAAGGAGG
GGTGAAGTATTTCAGGGAGGCTTTGGGTGTGGACCCAGAGCACGTATTTT
TCAATGCGCCGGTAATGTTGGATGTGGCACGCGTGCATGTGAAGGGAAAG
AGTTGGAAGGAGGCGAGGGAGGTGGTGGACCAGGCCATCGCGCTGACGGG
GGGGGGATTGAGTGACTGTTACATTGTCTTGAGCGACGTGTTGCAGGCGC
AGGAAGAGTATGAAGAGGCGGTACGGATATTGAGGAAAGCAGCCGAGCAG
TTTCAGGAGGATAATGGCGTGTCGGAGGCGTTGCAGAAGGCGGAGATTGC
GTTGAAGCAGAGTAAGGAGGTGAACTATTACAAGGTCTTGGGGGTGGACA
GACGGGCAACAACGGCAGAGGTCAAGAAGGCGTATCGCAATATGGCCAAG
ATTTACCACCCGGACAAGCAATCGGACGCGAGCCCCGAGGAGAAGGAGAA
GGCCGAGCGGGAGTTCTTGAAGATTGCTCAGGCTTACGAGGTGCTCAGCG
ACGAGGAGATCCGCGCGAAATACGACCGAGGAGAGGACGTTTCTGGCCAG
GCACAACAAGCGCAGCACCACAACCCGTTTGGGGCGGGGGGTCCATTCGG
AGGGGGGCAACATTTCACTTTTAGGTTTCATTAG
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Synonyms
Publications