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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:633946..636413 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01960.1 vs.
Match: EWM25017.1 (hypothetical protein Naga_100068g6 [Nannochloropsis gaditana]) HSP 1 Score: 625.2 bits (1611), Expect = 1.700e-175 Identity = 299/345 (86.67%), Postives = 325/345 (94.20%), Query Frame = 0
Query: 132 MQIFRKTSLVVVSLALLGVSTANKPVLNMHEDDFDSIRGLAEYITSSTGLSSAKNALDQGLVSSDFELETINPGGFLGHGRRLGATNEECGAFLAASLAPHLWECFDMAQTVLNLVKQENCQTSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSASMLKQSCNECASGEKCVGTKCRTVCSPSLPCPCSYACEDGACIPPKNSEVAINDLGVNGYKIALEYLCTTSPITKDYCFADIFEVLNAVDASTFCSKMKPIGCCTGTVFNFVTECATSNDTLSTNVGSISLNDLQQFCPEVDFKTPCANAPVLEPGACLDTYYLSGAWSVRASAMVTLALASLTTVA 477
MQIF+KTS ++++ ALLG+S A +P ++MH DDFD+IRG+AEYITSS GLSSAK ALD GLVSSDFELET++PGGF+GHGRRLGAT+EECGAFLAASLAPHLWECFDMAQTVLNLVKQENC+TSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSAS+LKQSCNECASGEKCVGTKCRTVCSPSLPCPCSYACE GACIPPKNSEV +ND+GVNGYKIALEYLCTTSP K+YCFADIF VLNA+DASTFCSKMKPIGCCTGTVFNFVTECATSNDTLST+ GSISL DLQQFCPE+DFKTPCANAP LEPGACLDTYYLS AWS+RAS ++TLALASL TVA
Sbjct: 84 MQIFKKTSFLLLTPALLGLSHAFEPTVDMHVDDFDAIRGIAEYITSSAGLSSAKGALDHGLVSSDFELETVSPGGFMGHGRRLGATDEECGAFLAASLAPHLWECFDMAQTVLNLVKQENCKTSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSASILKQSCNECASGEKCVGTKCRTVCSPSLPCPCSYACESGACIPPKNSEVTVNDMGVNGYKIALEYLCTTSPTNKNYCFADIFGVLNALDASTFCSKMKPIGCCTGTVFNFVTECATSNDTLSTSAGSISLTDLQQFCPEIDFKTPCANAPPLEPGACLDTYYLSSAWSMRASVVLTLALASLATVA 428
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01960.1 ID=NO11G01960.1|Name=NO11G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp AACTACCGTAACCTTTGAGAAGCGAAAGGAGCTTCTGTCTTGTATCTTAC TTCTTTACTGTCCCATGCACCCCTGTTTTTCACTGGCTCACGTTTGTCGC ACGTTCGTGCCTGTCAACGGCAGACGCGTTGTTTCCAGTGGGAAGCCAAG ACGGGGAACGCAGCGGGTCGCACAAGCCAGCAAGATCTCTTTTCCGGAGC CAGTGCGCCATCGATGCGCTGAACATTTCCCTTTGTCATATGTGTCCCTG GATACACAGGAGAACCCGCCAACCGGGACGAGGGCCTGTCCTCTATCACT GCATGCGAGGTTGCCCTCTGGCAATGCGCTGCCAAGTACACGGAGGGATG CGCGGTGCACTGGATGGCGTCGTCCCTTGCTTGAGACGCTGGCTCCTGTC GTTCTCAAACACGTCTTACCTTGCAACTCCACGCTCAGCCCAGTCACCCA CTCACACCCACCTCTATCCTCCATCCACACAATCTGACAGGGATAGGCAG CTCTGCGCCCTACGTCCACCACCACCGCAAGCCACTTCTCCAGCTCGCTC TCATAGCGTGCGCACAAGGAAAGACTGCCGTCCGTGTTTCAACTTCATAC CTCCGCACAACCTACACATACCACAAGCAACCATGCAGATCTTCAGGAAG ACGTCCCTGGTGGTCGTCTCTCTAGCACTTCTCGGCGTGAGCACCGCCAA CAAGCCGGTCCTGAACATGCATGAAGACGACTTCGACTCGATTCGCGGCC TAGCCGAGTACATTACCAGCTCCACGGGGCTGTCCAGCGCCAAGAATGCC CTAGACCAGGGCTTGGTTAGCAGCGATTTCGAGTTGGAAACTATCAACCC GGGAGGATTTTTGGGGCATGGCCGGCGGTTGGGGGCTACAAACGAGGAGT GCGGTGCCTTTTTGGCTGCTTCTCTGGCACCCCATTTGTGGGAATGCTTC GATATGGCCCAGACAGTGTTGAACTTAGTAAAGCAGGAGAACTGTCAGAC GAGCTATGATTTCTCTCAGGCGAACATGCACCGAATCTGTACCAACCAGT GCCACGACGTCCTGCACAAGACGCTCAGCACCATGTCTTCCGCTGGCTGC TCCGCCTCAATGCTTAAGCAGTCATGTAATGAGTGCGCCTCGGGCGAGAA GTGCGTGGGGACCAAGTGCCGTACCGTCTGCTCTCCCTCCCTGCCTTGCC CTTGCTCTTATGCCTGCGAAGATGGGGCTTGCATCCCTCCCAAGAACTCG GAGGTGGCTATCAACGACTTGGGCGTGAACGGCTACAAAATCGCCTTGGA ATATCTGTGCACGACGTCTCCCATCACCAAGGACTACTGCTTTGCCGACA TTTTCGAGGTGCTCAACGCTGTGGATGCCTCGACTTTCTGCAGCAAGATG AAGCCCATCGGCTGCTGCACGGGGACAGTCTTCAACTTTGTCACCGAGTG CGCGACAAGCAATGATACCCTCTCCACTAATGTCGGCTCGATTTCTCTGA ATGACTTACAGCAATTCTGCCCAGAGGTCGACTTCAAGACGCCCTGTGCA AATGCTCCTGTGCTTGAGCCGGGGGCCTGCCTCGATACTTATTACTTGTC TGGTGCCTGGTCGGTTCGTGCCTCCGCGATGGTGACTTTGGCATTGGCTT CCCTTACAACTGTGGCCGTGACGCTCATCCTTTGAATTTAAAATTGAGTA GTTCTAAGCGTAGTGTGTAGAAATGATGGAGAGTACGAAGAAAAGGCACG CGCCTGGTAAGATAATTTATGGAGATGAAAAGTTTGGCGGCGGCAAGAGA GGAATTGTGAGTAGAAAGAAACGGAAGACCCTTGTGGTTTTCTGGCTTGG ATTTGTGCGATGGAGGAGGAAAAAGAGAGAGAGAGAATCGAAGAGTATGA GGGGCGGGCAGGAAGGTCTTCTGACGTGCCTTTTCTCTTTTCTGCCATGA TCATTTTGAGTTTCAGTTTTCGAGTGTAGCAAATAATAAAACAACAACCA ACAAAAAGACATTAAAAAACAAAAGAGGAAGAAAGAGAGAGTCTTAGAGG TGAGAGAGGAGATGAAAAGGGGGCGTCTTATAAACATATATATATATATA TATGTATGTGTGTGTAGACTTCAGGATGAGCGAGGAAAATGAGGAAATAA TGGGGGAGTGAAAAAGAGTGAGAGTGAGCAGCGTCTGCGACTAGAGCATG GTGGATAGGACAAAGTGAAAGCAAATTTTCAGCACTATCAGAGCACAAGT CCTAGAATGGAGTAAGAAAGTAAGGAAGATCGTGCAAGGAGGGGGGGAAA GAGGTGGAGAAAACGAGAATCAATCAAATGTGGTGGACAGAGGAAGGTGG TCGACTGGCAAACGAAGGAAAGAAAGCAGTGAAATTGCCTTGGTTATGGA GAGATGGAAGGTGGACGGAAGGAGAGAGGAAACACATCAATCAAAAAAGA AATGTCCTTCGGAATCAC back to topprotein sequence of NO11G01960.1 >NO11G01960.1-protein ID=NO11G01960.1-protein|Name=NO11G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp MCPWIHRRTRQPGRGPVLYHCMRGCPLAMRCQVHGGMRGALDGVVPCLRR WLLSFSNTSYLATPRSAQSPTHTHLYPPSTQSDRDRQLCALRPPPPQATS PARSHSVRTRKDCRPCFNFIPPHNLHIPQATMQIFRKTSLVVVSLALLGV STANKPVLNMHEDDFDSIRGLAEYITSSTGLSSAKNALDQGLVSSDFELE TINPGGFLGHGRRLGATNEECGAFLAASLAPHLWECFDMAQTVLNLVKQE NCQTSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSASMLKQSCNECA SGEKCVGTKCRTVCSPSLPCPCSYACEDGACIPPKNSEVAINDLGVNGYK IALEYLCTTSPITKDYCFADIFEVLNAVDASTFCSKMKPIGCCTGTVFNF VTECATSNDTLSTNVGSISLNDLQQFCPEVDFKTPCANAPVLEPGACLDT YYLSGAWSVRASAMVTLALASLTTVAVTLIL* back to topmRNA from alignment at chr11:633946..636413- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01960.1 ID=NO11G01960.1|Name=NO11G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp|location=Sequence derived from alignment at chr11:633946..636413- (Nannochloropsis oceanica) AACTACCGTAACCTTTGAGAAGCGAAAGGAGCTTCTGTCTTGTATCTTAC
TTCTTTACTGTCCCATGCACCCCTGTTTTTCACTGGCTCACGTTTGTCGC
ACGTTCGTGCCTGTCAACGGCAGACGCGTTGTTTCCAGTGGGAAGCCAAG
ACGGGGAACGCAGCGGGTCGCACAAGCCAGCAAGATCTCTTTTCCGGAGC
CAGTGCGCCATCGATGCGCTGAACATTTCCCTTTGTCATATGTGTCCCTG
GATACACAGGAGAACCCGCCAACCGGGACGAGGGCCTGTCCTCTATCACT
GCATGCGAGGTTGCCCTCTGGCAATGCGCTGCCAAGTACACGGAGGGATG
CGCGGTGCACTGGATGGCGTCGTCCCTTGCTTGAGACGCTGGCTCCTGTC
GTTCTCAAACACGTCTTACCTTGCAACTCCACGCTCAGCCCAGTCACCCA
CTCACACCCACCTCTATCCTCCATCCACACAATCTGACAGGGATAGGCAG
CTCTGCGCCCTACGTCCACCACCACCGCAAGCCACTTCTCCAGCTCGCTC
TCATAGCGTGCGCACAAGGAAAGACTGCCGTCCGTGTTTCAACTTCATAC
CTCCGCACAACCTACACATACCACAAGCAACCATGCAGATCTTCAGGAAG
ACGTCCCTGGTGGTCGTCTCTCTAGCACTTCTCGGCGTGAGCACCGCCAA
CAAGCCGGTCCTGAACATGCATGAAGACGACTTCGACTCGATTCGCGGCC
TAGCCGAGTACATTACCAGCTCCACGGGGCTGTCCAGCGCCAAGAATGCC
CTAGACCAGGGCTTGGTTAGCAGCGATTTCGAGTTGGAAACTATCAACCC
GGGAGGATTTTTGGGGCATGGCCGGCGGTTGGGGGCTACAAACGAGGAGT
GCGGTGCCTTTTTGGCTGCTTCTCTGGCACCCCATTTGTGGGAATGCTTC
GATATGGCCCAGACAGTGTTGAACTTAGTAAAGCAGGAGAACTGTCAGAC
GAGCTATGATTTCTCTCAGGCGAACATGCACCGAATCTGTACCAACCAGT
GCCACGACGTCCTGCACAAGACGCTCAGCACCATGTCTTCCGCTGGCTGC
TCCGCCTCAATGCTTAAGCAGTCATGTAATGAGTGCGCCTCGGGCGAGAA
GTGCGTGGGGACCAAGTGCCGTACCGTCTGCTCTCCCTCCCTGCCTTGCC
CTTGCTCTTATGCCTGCGAAGATGGGGCTTGCATCCCTCCCAAGAACTCG
GAGGTGGCTATCAACGACTTGGGCGTGAACGGCTACAAAATCGCCTTGGA
ATATCTGTGCACGACGTCTCCCATCACCAAGGACTACTGCTTTGCCGACA
TTTTCGAGGTGCTCAACGCTGTGGATGCCTCGACTTTCTGCAGCAAGATG
AAGCCCATCGGCTGCTGCACGGGGACAGTCTTCAACTTTGTCACCGAGTG
CGCGACAAGCAATGATACCCTCTCCACTAATGTCGGCTCGATTTCTCTGA
ATGACTTACAGCAATTCTGCCCAGAGGTCGACTTCAAGACGCCCTGTGCA
AATGCTCCTGTGCTTGAGCCGGGGGCCTGCCTCGATACTTATTACTTGTC
TGGTGCCTGGTCGGTTCGTGCCTCCGCGATGGTGACTTTGGCATTGGCTT
CCCTTACAACTGTGGCCGTGACGCTCATCCTTTGAATTTAAAATTGAGTA
GTTCTAAGCGTAGTGTGTAGAAATGATGGAGAGTACGAAGAAAAGGCACG
CGCCTGGTAAGATAATTTATGGAGATGAAAAGTTTGGCGGCGGCAAGAGA
GGAATTGTGAGTAGAAAGAAACGGAAGACCCTTGTGGTTTTCTGGCTTGG
ATTTGTGCGATGGAGGAGGAAAAAGAGAGAGAGAGAATCGAAGAGTATGA
GGGGCGGGCAGGAAGGTCTTCTGACGTGCCTTTTCTCTTTTCTGCCATGA
TCATTTTGAGTTTCAGTTTTCGAGTGTAGCAAATAATAAAACAACAACCA
ACAAAAAGACATTAAAAAACAAAAGAGGAAGAAAGAGAGAGTCTTAGAGG
TGAGAGAGGAGATGAAAAGGGGGCGTCTTATAAACATATATATATATATA
TATGTATGTGTGTGTAGACTTCAGGATGAGCGAGGAAAATGAGGAAATAA
TGGGGGAGTGAAAAAGAGTGAGAGTGAGCAGCGTCTGCGACTAGAGCATG
GTGGATAGGACAAAGTGAAAGCAAATTTTCAGCACTATCAGAGCACAAGT
CCTAGAATGGAGTAAGAAAGTAAGGAAGATCGTGCAAGGAGGGGGGGAAA
GAGGTGGAGAAAACGAGAATCAATCAAATGTGGTGGACAGAGGAAGGTGG
TCGACTGGCAAACGAAGGAAAGAAAGCAGTGAAATTGCCTTGGTTATGGA
GAGATGGAAGGTGGACGGAAGGAGAGAGGAAACACATCAATCAAAAAAGA
AATGTCCTTCGGAATCAC back to topCoding sequence (CDS) from alignment at chr11:633946..636413- >NO11G01960.1 ID=NO11G01960.1|Name=NO11G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at chr11:633946..636413- (Nannochloropsis oceanica) ATGTGTCCCTGGATACACAGGAGAACCCGCCAACCGGGACGAGGGCCTGT CCTCTATCACTGCATGCGAGGTTGCCCTCTGGCAATGCGCTGCCAAGTAC ACGGAGGGATGCGCGGTGCACTGGATGGCGTCGTCCCTTGCTTGAGACGC TGGCTCCTGTCGTTCTCAAACACGTCTTACCTTGCAACTCCACGCTCAGC CCAGTCACCCACTCACACCCACCTCTATCCTCCATCCACACAATCTGACA GGGATAGGCAGCTCTGCGCCCTACGTCCACCACCACCGCAAGCCACTTCT CCAGCTCGCTCTCATAGCGTGCGCACAAGGAAAGACTGCCGTCCGTGTTT CAACTTCATACCTCCGCACAACCTACACATACCACAAGCAACCATGCAGA TCTTCAGGAAGACGTCCCTGGTGGTCGTCTCTCTAGCACTTCTCGGCGTG AGCACCGCCAACAAGCCGGTCCTGAACATGCATGAAGACGACTTCGACTC GATTCGCGGCCTAGCCGAGTACATTACCAGCTCCACGGGGCTGTCCAGCG CCAAGAATGCCCTAGACCAGGGCTTGGTTAGCAGCGATTTCGAGTTGGAA ACTATCAACCCGGGAGGATTTTTGGGGCATGGCCGGCGGTTGGGGGCTAC AAACGAGGAGTGCGGTGCCTTTTTGGCTGCTTCTCTGGCACCCCATTTGT GGGAATGCTTCGATATGGCCCAGACAGTGTTGAACTTAGTAAAGCAGGAG AACTGTCAGACGAGCTATGATTTCTCTCAGGCGAACATGCACCGAATCTG TACCAACCAGTGCCACGACGTCCTGCACAAGACGCTCAGCACCATGTCTT CCGCTGGCTGCTCCGCCTCAATGCTTAAGCAGTCATGTAATGAGTGCGCC TCGGGCGAGAAGTGCGTGGGGACCAAGTGCCGTACCGTCTGCTCTCCCTC CCTGCCTTGCCCTTGCTCTTATGCCTGCGAAGATGGGGCTTGCATCCCTC CCAAGAACTCGGAGGTGGCTATCAACGACTTGGGCGTGAACGGCTACAAA ATCGCCTTGGAATATCTGTGCACGACGTCTCCCATCACCAAGGACTACTG CTTTGCCGACATTTTCGAGGTGCTCAACGCTGTGGATGCCTCGACTTTCT GCAGCAAGATGAAGCCCATCGGCTGCTGCACGGGGACAGTCTTCAACTTT GTCACCGAGTGCGCGACAAGCAATGATACCCTCTCCACTAATGTCGGCTC GATTTCTCTGAATGACTTACAGCAATTCTGCCCAGAGGTCGACTTCAAGA CGCCCTGTGCAAATGCTCCTGTGCTTGAGCCGGGGGCCTGCCTCGATACT TATTACTTGTCTGGTGCCTGGTCGGTTCGTGCCTCCGCGATGGTGACTTT GGCATTGGCTTCCCTTACAACTGTGGCCGTGACGCTCATCCTTTGA back to top
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