NO11G01500.2, NO11G01500.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01500.2
Unique NameNO11G01500.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2631
Alignment locationchr11:503540..507177 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:503540..507177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01500.2 vs.
Match: EWM25079.1 (serine threonine protein kinase [Nannochloropsis gaditana])

HSP 1 Score: 538.9 bits (1387), Expect = 1.700e-149
Identity = 290/409 (70.90%), Postives = 317/409 (77.51%), Query Frame = 0 
Query:   24 MPGSPHVTIAEEVYNAESPTSVSRENRSGQRKVWLHLASSSASSSSTDLSATPSPGIALLRKRPDPLTSIEFLGSKSHATASSSCSASSSTTSSSSSSAASRFPFISPVEPLTTLARFHRSLNKVYIPLDEEEELEVGEKGFRSLNGKGSNFALLGTPGSSLLGAGAYGHVYKAIHFPTMRRVAIKKIPKDFGRANEFSNSFARELRNLYSNVRKITDEAKSARATQEEGPGGHCPFLLTLYDAYVEKNPTNLCLVLEYMEGGSLEQMMQKHPRDGCRDEGFLREVCHNVLKGLNYLHERQYLHQDVKPGNILLTLTHFAKLADFGLTVDVNSAADALGESYSAAVAVGSARYWPPELWGPTKRRDPEGKGDVWGLGLSIISLLCGKEPLHSCSTRSQVEIEVADAWKD 433
            M GSPH    +   +A++PT+  R  R  QRK WLHLA+  ASSS++D +++PS    ++RKRP PLT+I  L S S A             SSS SS ASRFPFISP+EPL TLARF R +NKVYIPLD+EEELEVGE GF+ LNGKGSNFALLGTPGSSLLGAGAYGHVYKAIHFPTMRRVAIKKIPKDFGR N+F+NSFARELRNLYSNVRKITD  KSAR  QE   GGHCPFLLTLYDAYVEKNPTNLCLVLEYMEGGSLEQMM ++PR GCRDEGFLREVCHNVLKGLNYLH RQYLHQDVKPGNILLTLT+FAKLADFGLTVDVN+ AD LGESY AAVAVGSARYW PELWGP K                         PL SC TRSQVEIE+ +AWK+
Sbjct:    1 MVGSPHSITEDTGCHADAPTTF-RGARPLQRKAWLHLAT--ASSSASDTTSSPSTNNDVMRKRPGPLTNIPLLDSASQA-------------SSSVSSQASRFPFISPMEPLVTLARFSRYMNKVYIPLDDEEELEVGEHGFQLLNGKGSNFALLGTPGSSLLGAGAYGHVYKAIHFPTMRRVAIKKIPKDFGRTNDFTNSFARELRNLYSNVRKITDVTKSARTVQEND-GGHCPFLLTLYDAYVEKNPTNLCLVLEYMEGGSLEQMMLQNPR-GCRDEGFLREVCHNVLKGLNYLHNRQYLHQDVKPGNILLTLTNFAKLADFGLTVDVNAGADVLGESYCAAVAVGSARYWAPELWGPEK-------------------------PLQSCRTRSQVEIEMGEAWKE 366
The following BLAST results are available for this feature:
BLAST of NO11G01500.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25079.11.700e-14970.90serine threonine protein kinase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01500NO11G01500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01500.2NO11G01500.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01500.2.cds1NO11G01500.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01500.2.cds2NO11G01500.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01500.2.cds3NO11G01500.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01500.2.cds4NO11G01500.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01500.2.cds5NO11G01500.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01500.2 ID=NO11G01500.2|Name=NO11G01500.2|organism=Nannochloropsis oceanica|type=mRNA|length=2631bp
TTTTGTTCGGCCCATCGAATGCTTCAGGAAGGCGTTGCAACTTGCCAGTT
TTGCTTTTGCTCGTTCTTACTTACTCCACCAATGCAACATTACGCACAGC
TCTTGCCTTCAAACCAATCTAGATACACGCATCGATATCATGTTTGTCTA
CCATCCTCTGGCCTGCATAATTTCGAAACTCATCTGACAACTCACTGGTT
TCTCTCTACCCAACCGTCCGCGTATGTGTCGATGCAGGGTTGCGTACCTT
TGTGAATTTGGGTACCACGGGGCCTCCATCGCCCTCCAGCCCATGCCGGG
TTCACCTCATGTAACCATTGCGGAGGAGGTGTACAATGCGGAGTCGCCCA
CCTCCGTCAGCCGAGAAAACCGTTCAGGGCAGCGCAAAGTATGGTTGCAC
CTGGCATCGTCGTCAGCCAGCTCCTCCTCTACCGACTTATCCGCGACCCC
CTCCCCAGGTATAGCCCTCTTACGAAAACGCCCAGACCCGCTAACGAGTA
TTGAGTTCCTGGGCTCCAAATCGCATGCCACCGCCTCGTCCTCGTGCTCT
GCCTCCTCGTCGACCACCTCGTCGTCCTCGTCGTCAGCCGCGTCCCGCTT
TCCCTTTATTTCCCCGGTGGAGCCCCTCACGACATTGGCCCGCTTCCATC
GTTCTTTGAACAAGGTGTACATTCCACTGGATGAGGAAGAAGAATTGGAA
GTTGGAGAAAAGGGCTTCCGCTCCCTGAATGGGAAGGGAAGCAACTTCGC
CCTCCTTGGCACACCTGGCAGCAGCTTGCTCGGCGCGGGTGCATACGGCC
ACGTGTACAAAGCCATCCATTTCCCAACCATGCGTCGTGTAGCCATTAAA
AAGATCCCCAAGGACTTTGGACGGGCGAACGAATTCAGCAACAGTTTCGC
CAGAGAGCTCCGGAACTTGTATAGCAATGTGAGGAAAATCACAGACGAAG
CAAAAAGCGCACGAGCTACGCAGGAGGAAGGGCCCGGAGGCCATTGCCCG
TTTTTGTTGACTTTGTACGATGCGTATGTGGAGAAGAACCCGACGAATTT
GTGCTTGGTATTGGAGTATATGGAGGGTGGCTCCCTAGAGCAGATGATGC
AGAAGCACCCCCGTGACGGCTGCCGGGATGAGGGCTTTCTCCGCGAGGTC
TGCCACAACGTCCTCAAGGGCCTCAACTATCTGCACGAACGACAATATCT
TCACCAAGACGTCAAGCCTGGAAACATTCTCCTCACTCTCACGCATTTCG
CGAAACTTGCTGATTTTGGGTTGACTGTCGATGTGAATTCGGCGGCAGAC
GCCTTGGGCGAGAGCTACTCAGCTGCCGTAGCGGTGGGCTCGGCCAGATA
CTGGCCGCCGGAGCTGTGGGGGCCCACGAAGCGACGGGATCCCGAGGGAA
AGGGCGATGTGTGGGGACTGGGGCTGAGCATCATCTCCCTCCTCTGCGGG
AAGGAGCCGCTGCATTCGTGCAGCACGCGCTCGCAGGTGGAGATTGAGGT
GGCGGATGCCTGGAAGGACGGTAAGGGTCGGACCAAAAAGCTTGGGGAAA
AGAGGGAAGGAGAAGAGTGGGAAAGAGGAGATGGCGTTTGCTCTCTCTAC
TTGCGTTTTATGATTTTGCATCCCCTCCTCCATTTATCTTGTCCCCCCGC
ATGTCGTTCCTTTCCCCGTCCTCCCCCCCTTTTTCCCCCTTAAGCCGTGG
ACAACAAACGATCCTGCCGGGCCGCAGCCGAAGCCAAAGGCATCTTCAGC
ACCGAGGTGCTCCAAGGCCTCTCTTCTTCTTTCCAGAATTTCTTGTCGCA
ATGCTTGAGAGATCTGCCTGACCGGCCGACAGCAGCTGAATTACTGCAGC
ATCGTTTCATCAAGATGTATAACAAGGGTTTATCGCGACGACAGAGGGAG
CTGGATGAGGCGGTCCAGGCTCTCAAGACTCATATTCAAATACATGAAGA
GTGGAAGATCACCCCACAAATGGTGGAGTTGCTCGCCCGGGAGCTGCGTG
TCCCTACGAGTGACTTGAGAGAATATTTGGAGGAGCACGTCGAACCGGGC
CTCATGCGTAGCATGGGTGCCAGCACGGTAGCTGATATCGAGAAGGGGGT
AGTGGATATAGTGACGGGTGCTGGGGAGAAGGAGGAGGAGAAGGAGGAGG
GGGACGAGGAAGAAGGTGAAGAGGAAGAGAAGACGGAGGGGGGAGAAGGA
GGAGATTCAGAGGCTCTAGGCGCTGATAGTTTGCAGCGAAATTTCTTGAA
CTACTACGATGAGTTGGATAACCTTAAGACATTGGTCATTCCGCCTTTGG
AAGAGTTGGTGAGGGAATTGAGGGGGCAGATCATGGAGAAAGATGCCGGT
TTGACGGAGGCAAGGAAAGAGATTGAATTATTGAAGCAGCAGTTGGTAAG
GGCATCGGTGGGGCTACCCATGCCATAGAAAAAAGGGTGTGAGAGAGGGG
GATAGGAATAGAGGGAGAGTTATGTTCTGATCCGTTTTGAATGACACACG
GCAAAAGGAAGAGAGCAATACGCGGGGAATGGAGATAAAGGAGACAATAA
CAGAAAGGTTAAATAAATGAAAATTGTATTTGAGAAAAAGGAACAAATAT
ATGATCAATGAGGCAAAGTTGACAAGGGCGA
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protein sequence of NO11G01500.2

>NO11G01500.2-protein ID=NO11G01500.2-protein|Name=NO11G01500.2|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MCRCRVAYLCEFGYHGASIALQPMPGSPHVTIAEEVYNAESPTSVSRENR
SGQRKVWLHLASSSASSSSTDLSATPSPGIALLRKRPDPLTSIEFLGSKS
HATASSSCSASSSTTSSSSSSAASRFPFISPVEPLTTLARFHRSLNKVYI
PLDEEEELEVGEKGFRSLNGKGSNFALLGTPGSSLLGAGAYGHVYKAIHF
PTMRRVAIKKIPKDFGRANEFSNSFARELRNLYSNVRKITDEAKSARATQ
EEGPGGHCPFLLTLYDAYVEKNPTNLCLVLEYMEGGSLEQMMQKHPRDGC
RDEGFLREVCHNVLKGLNYLHERQYLHQDVKPGNILLTLTHFAKLADFGL
TVDVNSAADALGESYSAAVAVGSARYWPPELWGPTKRRDPEGKGDVWGLG
LSIISLLCGKEPLHSCSTRSQVEIEVADAWKDGKGRTKKLGEKREGEEWE
RGDGVCSLYLRFMILHPLLHLSCPPACRSFPRPPPLFPP*
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mRNA from alignment at chr11:503540..507177+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01500.2 ID=NO11G01500.2|Name=NO11G01500.2|organism=Nannochloropsis oceanica|type=mRNA|length=3638bp|location=Sequence derived from alignment at chr11:503540..507177+ (Nannochloropsis oceanica)
TTTTGTTCGGCCCATCGAATGCTTCAGGAAGGCGTTGCAACTTGCCAGTT
TTGCTTTTGCTCGTTCTTACTTACTCCACCAATGCAACATTACGCACAGC
TCTTGCCTTCAAACCAATCTAGATACACGCATCGATATCATGTTTGTCTA
CCATCCTCTGGCCTGCATAATTTCGAAACTCATCTGACAACTCACTGGTT
TCTCTCTACCCAACCGTCCGCGTATGTGTCGATGCAGGGTTGCGTACCTT
TGTGAATTTGGGTACCACGGGGCCTCCATCGCCCTCCAGCCCATGCCGGG
TTCACCTCATGTAACCATTGCGGAGGAGGTGTACAATGCGGAGTCGCCCA
CCTCCGTCAGCCGAGAAAACCGTTCAGGGCAGCGCAAAGTATGGTTGCAC
CTGGCATCGTCGTCAGCCAGCTCCTCCTCTACCGACTTATCCGCGACCCC
CTCCCCAGGTATAGCCCTCTTACGAAAACGCCCAGACCCGCTAACGAGTA
TTGAGTTCCTGGGCTCCAAATCGCATGCCACCGCCTCGTCCTCGTGCTCT
GCCTCCTCGTCGACCACCTCGTCGTCCTCGTCGTCAGCCGCGTCCCGCTT
TCCCTTTATTTCCCCGGTGGAGCCCCTCACGACATTGGCCCGCTTCCATC
GTTCTTTGAACAAGGTGTACATTCCACTGGATGAGGAAGAAGAATTGGAA
GTTGTAAGTACGACGGCATCGTGGGTCGGATTATTCGGCTGGGAGGAGGA
CATTGTGTGGGAGCTGGGAGGGCGATGCCCGTTGCGCCGGACGAGCATTG
ATACATAGAATTTCAGCATATGTCTACAGTGCTAATCATTTACTATTTCT
TACTTTTCTGACGATGTCTTTTTCTTTAAATAGGGAGAAAAGGGCTTCCG
CTCCCTGAATGGGAAGGGAAGCAACTTCGCCCTCCTTGGCACACCTGGCA
GCAGCTTGCTCGGCGCGGGTGCATACGGCCACGTGTACAAAGCCATCCAT
TTCCCAACCATGCGTCGTGTAGCCATTAAAAAGATCCCCAAGGACTTTGG
ACGGGCGAACGAATTCAGCAACAGTTTCGCCAGAGAGCTCCGGAACTTGT
ATAGCAATGTGAGGAAAATCACAGACGAAGCAAAAAGCGCACGAGCTACG
CAGGAGGAAGGGCCCGGAGGCCATTGCCCGTTTTTGTTGACTTTGTACGA
TGCGTATGTGGAGAAGAACCCGACGAATTTGTGCTTGGTGAGTGGCAAGG
GGAGCAGGAGTGGGAGGAAGGGAGGGAGGAAATGTTTTTTACGCCGATGG
AAGGGTCCAAGTCCGGAGATGAAGGGAGGGAAAAAATGGAGGGAAGGGAG
TCGAAGGCCAGAGATGATGTGAGGGACTGCATGGCTGTCATGCCCTGCTT
CGAAATGATCATTCTCATTTGTCATAATTTCCTCCACACAACACTTTCGT
ATCTTCCATTTTGATGTTATTCAGGTATTGGAGTATATGGAGGGTGGCTC
CCTAGAGCAGATGATGCAGAAGCACCCCCGTGACGGCTGCCGGGATGAGG
GCTTTCTCCGCGAGGTCTGCCACAACGTCCTCAAGGTAGGTAGAATGCAA
GAACGCCATTGGGAGAAGGAGGACGGAGATTAGAAAAACGAAAGATGCGA
TGAGGGGGGCGTTTGTAGGGCTTTCTGGGGAACGACGCCCTCTCGACAAG
CGTGAACTCGCTCACCTCTTCCTCCCTTCCTCCTTCACCTCCATCTGTCA
CAGGGCCTCAACTATCTGCACGAACGACAATATCTTCACCAAGACGTCAA
GCCTGGAAACATTCTCCTCACTCTCACGCATTTCGCGAAACTTGCTGATT
TTGGGTTGACTGTCGATGTGAATTCGGCGGCAGACGCCTTGGGCGAGAGC
TACTCAGCTGCCGTAGCGGTGGGCTCGGCCAGATACTGGCCGCCGGAGCT
GTGGGGGCCCACGAGTACGTACTTTTGTAGAAGGGAGATATAGATAGAGA
GAAATGTAGATATAGATATAGATATAGATATAGATACGTACATCCATATC
TACATACATACATGTAGATAATAATGCTTGAACATGGCTTGAGATATACT
GCTGCTTATTTGGATGCACGTTGTCAACAGGCTTCACTCACCGCTTCTGC
CCTTTCTCTCCATTTTGGTACATCTATATATTTCACCGAAACCTCACAGA
GCGACGGGATCCCGAGGGAAAGGGCGATGTGTGGGGACTGGGGCTGAGCA
TCATCTCCCTCCTCTGCGGGAAGGAGCCGCTGCATTCGTGCAGCACGCGC
TCGCAGGTGGAGATTGAGGTGGCGGATGCCTGGAAGGACGGTAAGGGTCG
GACCAAAAAGCTTGGGGAAAAGAGGGAAGGAGAAGAGTGGGAAAGAGGAG
ATGGCGTTTGCTCTCTCTACTTGCGTTTTATGATTTTGCATCCCCTCCTC
CATTTATCTTGTCCCCCCGCATGTCGTTCCTTTCCCCGTCCTCCCCCCCT
TTTTCCCCCTTAAGCCGTGGACAACAAACGATCCTGCCGGGCCGCAGCCG
AAGCCAAAGGCATCTTCAGCACCGAGGTGCTCCAAGGCCTCTCTTCTTCT
TTCCAGAATTTCTTGTCGCAATGCTTGAGAGATCTGCCTGACCGGCCGAC
AGCAGCTGAATTACTGCAGCATCGTTTCATCAAGATGTATAACAAGGGTT
TATCGCGACGACAGAGGGAGCTGGATGAGGCGGTCCAGGCTCTCAAGACT
CATATTCAAATACATGAAGGTAGGGAGGGGAAATGGCGGTAAAGACAAGG
AGCATGGGGAAAGGAAGGGAGGGTGCGAGGCTTATTCTAATGTGATCCGA
TTCAATCACAAATTCTATTTTTATTTCGTGCTCTTCTAGCCGTTTGTGCC
GCGCTGGTTAATTTTCAATTCCTCTCCTCCTTTATCCCCATTCATTCATA
CAACAGAGTGGAAGATCACCCCACAAATGGTGGAGTTGCTCGCCCGGGAG
CTGCGTGTCCCTACGAGTGACTTGAGAGAATATTTGGAGGAGCACGTCGA
ACCGGGCCTCATGCGTAGCATGGGTGCCAGCACGGTAGCTGATATCGAGA
AGGGGGTAGTGGATATAGTGACGGGTGCTGGGGAGAAGGAGGAGGAGAAG
GAGGAGGGGGACGAGGAAGAAGGTGAAGAGGAAGAGAAGACGGAGGGGGG
AGAAGGAGGAGATTCAGAGGCTCTAGGCGCTGATAGTTTGCAGCGAAATT
TCTTGAACTACTACGATGAGTTGGATAACCTTAAGACATTGGTCATTCCG
CCTTTGGAAGAGTTGGTGAGGGAATTGAGGGGGCAGATCATGGAGAAAGA
TGCCGGTTTGACGGAGGCAAGGAAAGAGATTGAATTATTGAAGCAGCAGT
TGGTAAGGGCATCGGTGGGGCTACCCATGCCATAGAAAAAAGGGTGTGAG
AGAGGGGGATAGGAATAGAGGGAGAGTTATGTTCTGATCCGTTTTGAATG
ACACACGGCAAAAGGAAGAGAGCAATACGCGGGGAATGGAGATAAAGGAG
ACAATAACAGAAAGGTTAAATAAATGAAAATTGTATTTGAGAAAAAGGAA
CAAATATATGATCAATGAGGCAAAGTTGACAAGGGCGA
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Coding sequence (CDS) from alignment at chr11:503540..507177+

>NO11G01500.2 ID=NO11G01500.2|Name=NO11G01500.2|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at chr11:503540..507177+ (Nannochloropsis oceanica)
ATGTGTCGATGCAGGGTTGCGTACCTTTGTGAATTTGGGTACCACGGGGC
CTCCATCGCCCTCCAGCCCATGCCGGGTTCACCTCATGTAACCATTGCGG
AGGAGGTGTACAATGCGGAGTCGCCCACCTCCGTCAGCCGAGAAAACCGT
TCAGGGCAGCGCAAAGTATGGTTGCACCTGGCATCGTCGTCAGCCAGCTC
CTCCTCTACCGACTTATCCGCGACCCCCTCCCCAGGTATAGCCCTCTTAC
GAAAACGCCCAGACCCGCTAACGAGTATTGAGTTCCTGGGCTCCAAATCG
CATGCCACCGCCTCGTCCTCGTGCTCTGCCTCCTCGTCGACCACCTCGTC
GTCCTCGTCGTCAGCCGCGTCCCGCTTTCCCTTTATTTCCCCGGTGGAGC
CCCTCACGACATTGGCCCGCTTCCATCGTTCTTTGAACAAGGTGTACATT
CCACTGGATGAGGAAGAAGAATTGGAAGTTGGAGAAAAGGGCTTCCGCTC
CCTGAATGGGAAGGGAAGCAACTTCGCCCTCCTTGGCACACCTGGCAGCA
GCTTGCTCGGCGCGGGTGCATACGGCCACGTGTACAAAGCCATCCATTTC
CCAACCATGCGTCGTGTAGCCATTAAAAAGATCCCCAAGGACTTTGGACG
GGCGAACGAATTCAGCAACAGTTTCGCCAGAGAGCTCCGGAACTTGTATA
GCAATGTGAGGAAAATCACAGACGAAGCAAAAAGCGCACGAGCTACGCAG
GAGGAAGGGCCCGGAGGCCATTGCCCGTTTTTGTTGACTTTGTACGATGC
GTATGTGGAGAAGAACCCGACGAATTTGTGCTTGGTATTGGAGTATATGG
AGGGTGGCTCCCTAGAGCAGATGATGCAGAAGCACCCCCGTGACGGCTGC
CGGGATGAGGGCTTTCTCCGCGAGGTCTGCCACAACGTCCTCAAGGGCCT
CAACTATCTGCACGAACGACAATATCTTCACCAAGACGTCAAGCCTGGAA
ACATTCTCCTCACTCTCACGCATTTCGCGAAACTTGCTGATTTTGGGTTG
ACTGTCGATGTGAATTCGGCGGCAGACGCCTTGGGCGAGAGCTACTCAGC
TGCCGTAGCGGTGGGCTCGGCCAGATACTGGCCGCCGGAGCTGTGGGGGC
CCACGAAGCGACGGGATCCCGAGGGAAAGGGCGATGTGTGGGGACTGGGG
CTGAGCATCATCTCCCTCCTCTGCGGGAAGGAGCCGCTGCATTCGTGCAG
CACGCGCTCGCAGGTGGAGATTGAGGTGGCGGATGCCTGGAAGGACGGTA
AGGGTCGGACCAAAAAGCTTGGGGAAAAGAGGGAAGGAGAAGAGTGGGAA
AGAGGAGATGGCGTTTGCTCTCTCTACTTGCGTTTTATGATTTTGCATCC
CCTCCTCCATTTATCTTGTCCCCCCGCATGTCGTTCCTTTCCCCGTCCTC
CCCCCCTTTTTCCCCCTTAA
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Synonyms
Publications