Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr11 genome chr11:324652..328259 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G00820.2 vs.
Match: EWM25158.1 (hypothetical protein Naga_100016g58 [Nannochloropsis gaditana])
HSP 1 Score: 100.9 bits (250), Expect = 1.800e-17
Identity = 66/140 (47.14%), Postives = 82/140 (58.57%), Query Frame = 0
Query: 608 LTELLMSAGCELSRLKGPDDLKLYVLNHREEIEELVPPNRAPYPKERGAWKKVWEWASGERIWEEEGGHHLAG-GGLFYYRGNGVNGVRTRVRGKEEE------DGLVATGEGGEEEEEMV--ERLVEEEKEEVAEEEEE 739
L +L + GC++S L G ++L+ YVL H+ E+E LVPPNR PYP+ER AWKKVWEWASG+RIWE E GHH G G G+ R V K E +G G GG +EE V E E EE AEEE++
Sbjct: 367 LQHMLRALGCQVSDLGGAEELRRYVLTHKREMEALVPPNRVPYPRERAAWKKVWEWASGKRIWEGEAGHHRLGLGASSSSAGSFRQQARALVSDKAESMETHSFEGEANRGLGGGQEEGDVSDEEAGMGEGEEEAEEEDK 506
The following BLAST results are available for this feature:
BLAST of NO11G00820.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 1.80e-17 / Id = 47.14 Sequence EWM25158.1
Match Name E-value Identity Description
EWM25158.1 1.800e-17 47.14 hypothetical protein Naga_100016g58 [Nannochlorops... [more]
back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO11G00820.2 ID=NO11G00820.2|Name=NO11G00820.2|organism=Nannochloropsis oceanica|type=mRNA|length=3337bp back to top protein sequence of NO11G00820.2
>NO11G00820.2-protein ID=NO11G00820.2-protein|Name=NO11G00820.2|organism=Nannochloropsis oceanica|type=polypeptide|length=772bp back to top mRNA from alignment at chr11:324652..328259-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00820.2 ID=NO11G00820.2|Name=NO11G00820.2|organism=Nannochloropsis oceanica|type=mRNA|length=3608bp|location=Sequence derived from alignment at chr11:324652..328259- (Nannochloropsis oceanica)ATGGAAAGCAATA
ACACTGCATTTGACAATGCCCTCAAGACCATTATTGCAGTCCTTGGGCCC
CACCACAACTACCAAGCCCTTCCCTCTTCAACCCCTGAAAGAGGAGGAGG
AAGTGGAGGAGGAGGAGGAGGATGCCAGGGCAATCAACTCTACGATCCCC
GGCGGGCCTGTAGTAGCAGCAGCAACAGCAGCTCACGGCTATCTATAACA
CAGCCTCCGATTCAGCTGCGGACAAGTATAAGTCGTGGTAGTGGAGGTGG
AGAAGGCGATGGTGGAGTCCACACAGGATTGGAGGAGGAGGTGGTGGTGG
AGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGTAGAG
GAAACGGAAGAAGAACTGTCGGCGCTATCTGCCTCTAACAGTCATCCAGT
CCTTGATGAGATAAGTAATAGTGGTGGCGGTCGGTGTGCTTCTGCTTTCT
CTGCGTCGCCAATTGCGGGAGGAGGAGAGGAAGAGAGAGAGCACCAAGAC
GCCCCATGTGCTGGATCAATCCACCTTCTGGGGCCATCTTTCTTGCAGCC
AATCAGTCGAGGCGCTTATCTAAGTCGGGGTAGAGGAGGTGGGGACCCTT
CGCGGAATGAGGATGATAGATCGTTTTCTGGGGCGGCCTCTAAACTTAGT
GCCTCGACGGACGAGCGAAACCACCACCACTACCACCACCACCACCACCA
CCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGACAACAACAACAACAACAGCATCATCAACACGAGTGTAATCCA
AGCAAGAAACGGAGCCGAAATCCCCGGCCTGGCGACTTCCGGCCCGCCTC
CTCTTCCACCAGTGACGACGATGATCATATCTCCTACCACCGGGGCAGGA
CCGTATGGGAGGGCGGCGGCGATACAGATAGAGAATACCTCCCTCGTGGC
TCTTCCTCCCTCACCGCCTCCTCCCTTGCGTCCTCCCTTCCCGCCAACCC
CCTTCCTTCAAAGCCTCTCTCCTACCAAGACTTATCGGCTGCCGTCCGCG
GCTTCCTGCGAGGCTTCGAGCGTTATCTCTTCCTCGAACACATATCTCCT
TTCACAGGCCAACCCTTGGCGCCGCTCACAGTGGCAAACCGCCTGGCACA
GGCTCAACGGCTGCTGCTAAAGGGAGGGGTTGACGTGCCGACCGAGGGCA
ACGTAGAAGCGCTTCGGCGGATGTTCGGGCAGGATCGGAACACATTCAAC
TTGGTTGGGGACATGCTTACTTATTTGGAATGGTCACGAAAGGGGAAGAG
AGGGGGAGGGGGAGAGAGAGGGGGAGAGGGAGAGGGGGATGTGGCGCGGG
GGAATTGCGCGAGGTTTGCGGCTTTTGGCCATGCAGAGAGGGATGAGGAG
ATGATTATGGGGGAAGGGATGGGGGGTATTGGTATTGTGAGGAGAGGGAG
GGGCCCGGGAAGTAGGGGTGGAAGGAGGGGGAGGGGGAGGGGGAGGGGGA
GTCGTGGGGGGAGGAGGGGGAGGGGCGGAGGGAGGGGACGGTGGTCGAGT
AGGGGGGAAAATGGATTGTTCTTGCCACTGCAGCTTCAAGAGGCTGCTGC
TGCTGGTGGGGGTGGTCATGGTGGTAATGGAAGCATGATAGGAAAAGGGG
GCGTGGCGAGCAGTGTTAGCAGCAGTGCTGTCAGTGTTGGGGGTCAGAAT
CCGCGGCTGGAGGTCTCACACGCCTGCAAGGACTTCTTGCGGTGGATGCG
GGTCGAAGACGACGGCGCTCGTGTGTCCAACTCGACCGCTTACGCCTACC
ATCTCATTCTGACTGAGCTCCTTATGTCGGCTGGGTGTGAGCTTTCTCGC
TTGAAGGGACCTGATGATCTAAAGCTTTACGTACTTAACCATCGAGAGGA
AATTGAGGAGCTAGTGCCGCCTAATCGAGCGCCCTACCCGAAGGAAAGGG
GAGCCTGGAAGAAGGTGTGGGAGTGGGCGAGTGGAGAGAGGATATGGGAG
GAGGAAGGAGGGCATCATCTGGCGGGTGGGGGGTTGTTTTATTATCGAGG
GAATGGAGTGAATGGAGTGAGGACGCGGGTGAGGGGAAAGGAGGAGGAGG
ATGGGTTGGTGGCGACGGGAGAGGGAGGGGAGGAGGAGGAAGAGATGGTG
GAACGGCTGGTAGAGGAGGAGAAGGAGGAGGTGGCAGAGGAGGAGGAAGA
GGAGGGGGGGGGGAGGGAGAAATGCAAGGTGAGGGGGACGAAGAGGAGAG
TGACGAGGAGGGCGAGGGAGAGGAGGAGGGCGAAGCGTCAGAAGATGAGC
TGA back to top Coding sequence (CDS) from alignment at chr11:324652..328259-
>NO11G00820.2 ID=NO11G00820.2|Name=NO11G00820.2|organism=Nannochloropsis oceanica|type=CDS|length=2316bp|location=Sequence derived from alignment at chr11:324652..328259- (Nannochloropsis oceanica) back to top