NO11G00750.2, NO11G00750.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00750.2
Unique NameNO11G00750.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2843
Alignment locationchr11:307113..310103 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:307113..310103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00750.2 vs.
Match: CBJ28314.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 232.6 bits (592), Expect = 3.200e-57
Identity = 132/318 (41.51%), Postives = 184/318 (57.86%), Query Frame = 0 
Query:   39 RLYNLSPRSARA---EALADSSNGEPDDGTSSSTSRHYWRPRRLLSSYVTPSGDVKELMRKKFWHIGAFILLVGSICTFVSFSYAPQSMLAALGSVQFLSNVFFARFVLSEKITLRVILATCIIIAGQILIVVYSPHKSREYDAHSLIALYDRIFLIYMGVLVVIGGGLIFIYRHYKKRKVEGRELSHTDTVLPVTYAMTSAMIGTFSVLQAKCLSELLRRTLNGDNQLKFFYTWFVLLVWLFLTVFWLHRMNTALRLFDGIFIIPVLQVFWTLFAIMTGGIYFQEFQEYSSKMLALFVFGVLIIFSGVALLSPRQTT 354
            R  N+SP        E  A+    E    +SS    H         ++  P     E M    W++GA +L+ GS+  F SF +APQS+LA+LGSVQF+SNV F + +L E +T R+IL T  II G  L + +SPH+   +  H L A YD  +   + + + I   +   Y+ +K+ K +GR   H+D V+P+ YA+ SA++GT SV+ AKCLSELL  T  G+NQL   +T+ V  +WL  T+FWL RMN AL +F G+FIIP LQVFWT F+++ GG YF+EF          F  GVL++F GV LL+PR  T
Sbjct:  249 RPLNISPNQGGGGGEEGFAEKGGLEASGSSSSGGHGHGG------GAWEQPPTTPPEWMATALWYLGAVLLVAGSLVNFASFGFAPQSLLASLGSVQFISNVVFGKVILREMVTRRIILGTATIILGNTLTLCFSPHQDDNFSTHELKAFYDAEYNTLLLLELAIALAMHAAYKSFKRSKEQGRPRRHSDLVMPLAYAICSAIVGTQSVVNAKCLSELLTLTFQGENQLGSIFTYLVFAIWLGTTIFWLVRMNQALAMFHGLFIIPALQVFWTFFSVIDGGFYFEEFHTLHVLGGLGFAVGVLVVFCGVYLLAPRTQT 560
The following BLAST results are available for this feature:
BLAST of NO11G00750.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ28314.13.200e-5741.51conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00750NO11G00750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00750.2NO11G00750.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00750.2.cds1NO11G00750.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00750.2 ID=NO11G00750.2|Name=NO11G00750.2|organism=Nannochloropsis oceanica|type=mRNA|length=2843bp
ACAGAGCCTGCGTGGAAGACGTCGCTCAACTTTTTCGGGGGTTGACCACT
CTAGCGCTCCAAAAAAGCAAGGACAACGCAGCTCTGTCCACGTAACAACG
ATTGCACGTCCTTGCCCTCGACTTTCTGGACTTTAGGGACACGTGGAGGT
GTTATCGCAGTGCCCGGCGCAGCTGGCAGGAACAGCAGCACCGGCGGAGC
CAGGCCCCGCATAGCGCAAGAGGTAGATGGGGGTCCCAACATGGAGCGTT
GGGGTGATTATCAACGTCATAGGGTCCATCTCAATCAATTTCGGGACCAA
TTTAATGAAGTTTGCGCACAATGAGAAGAATCGACAGCGAAAAGAAATCG
AATTGTCCGAGCAAGACAGTGAAATCACAGGCGGTGACCAGGTATGAATA
ACGAAACGAATAGACAGACCACTGTCTTCCAACACTTGTGCTATATTACT
TTTCATTCTCGTTCACACACTCCAACAACCCACAGCGCATCCCTTCCACT
TCTTTCGGCACTCTTGCATCCAGTAGCAGCAAGGCCGCCAGTTCACACCT
GGTGGGTGCAAGCAGCAACGACTCTACCCCACCAACCAGGCGCCCCTCCT
TGCAATTAATGATCAGCCACGACGACGAGGACACGTCGTCGCGTACCCCC
ATTACCGAGCCTCGAAGACTGACCTTTGCAGAGTATCGAGATCATGTTGT
GGCATCCTTTAGTCGAGGCCTGCGGCTTTACAACCTTAGTCCCCGCTCTG
CCCGAGCGGAGGCCTTGGCCGACAGCAGCAACGGTGAGCCGGACGACGGG
ACCAGCAGCTCTACATCTCGACATTATTGGAGGCCAAGACGACTGTTATC
CAGTTATGTTACTCCAAGTGGAGATGTCAAGGAATTGATGCGAAAGAAGT
TCTGGCACATCGGCGCCTTCATCCTCTTGGTTGGCAGCATCTGTACCTTT
GTCTCCTTCTCCTACGCCCCCCAGTCCATGCTCGCGGCGTTGGGCTCCGT
CCAATTCCTGAGTAATGTTTTTTTTGCCCGGTTCGTCCTCTCAGAGAAAA
TCACGCTTCGAGTTATCCTGGCCACGTGTATCATCATCGCAGGCCAGATC
CTGATTGTGGTCTACTCTCCCCATAAGAGCCGTGAATACGATGCACACTC
CCTCATAGCTCTCTATGACCGGATCTTCCTCATCTACATGGGCGTTTTGG
TAGTGATAGGAGGAGGCTTAATCTTCATTTATCGACATTACAAAAAAAGG
AAGGTGGAGGGAAGGGAGCTGTCCCACACAGACACGGTGTTGCCGGTGAC
GTATGCGATGACCTCAGCCATGATCGGCACCTTCAGTGTGCTGCAGGCCA
AGTGCCTGTCCGAATTGTTGAGGCGGACCTTAAATGGAGACAACCAGCTC
AAGTTCTTTTATACTTGGTTTGTGCTATTGGTATGGTTGTTCTTGACAGT
GTTCTGGTTGCATCGGATGAACACAGCTTTGCGCCTGTTCGATGGTATTT
TTATCATTCCCGTGCTGCAGGTCTTCTGGACTCTATTTGCCATTATGACA
GGGGGCATTTATTTCCAGGAATTTCAAGAATACAGCTCCAAAATGTTGGC
ATTGTTTGTTTTCGGCGTCTTGATCATCTTTTCAGGCGTTGCCCTCCTTT
CCCCCCGGCAGACGACGGTGGAGGCAGAGGAGTTGTTCGAGGAGATTCTC
GACGAGGAAGGCGCATCCTCCTGGAGAGGCATGGACACAGAGGAAGAAAG
CAGCCCTTCTTCATCCAATAGCCCTCCTCCCCCGTCAACGGGCGACAAAG
TAAACTCCCTTGACGACCCAGGGCAGATAAATAAGGGGCATGACGGGCAT
GGGAAGGGCAGCGGCAGGCAGCAGCAAGCACCACAGGCGCTGGCGGCGCA
CCAGGCCAACATCATCCATCCATTGCGTGGTATATCGGCAGCGGCTATGA
CGAATGGTGATTGCACCGGAGAGGAGGAATATCCATGGCCATCGCATCTG
ATAGGCATTTCTCGATCCCCCTTTCAAGCACTCGTCGCCGATGGAGACAT
GGCTGATGCTGCTGATGCTGCCGCCAGTGATTCTGGTGGGGATGCCGATT
ATAGTAATATGACTCTTTCCTCCAGAGGGGGCGAAAGCCCGTCTAAGCCG
CTACCACCTCAGATCCAGAGCAAGCCCCCTACAAACACGAAAGTAATTAC
TGGATCGGCGGCGTGCAGAGCATCGAGCCTCGACGTACTAGACAAAAATA
ATTCGTGTCTTTTCTCCTTCTGCACCCTGCCCTTTATTGCCAACGACCAA
GATCTCACCAACTTTTTGGCCCACGTAACCCCTACCCTGCTGTCCGAGGA
TCCCACCTCAACCCGTTCAGTCTGCTCTTCTTCGCATCGGACGACGCCCA
TGGGTGAATGCGAAAAGGGTGGGCAAGCAAATGTGGTCCCCGACTGTGTT
GGCATCAACTTTTCGTGTGTCGCGTGATTTCCCGGCTGCGATTTCTGCAT
CTGTTCCCTCTTTGCCAAGCAGCGGCCGAGGAGCAGTCAGCAATCGCAAT
ATCATAGAGAAGATGACAGCCAGTGTCAAGCACTTCAAAAATATCGACTG
TGACTGAAGCGACTCGGTGGAGATGAGAGGTGTATAGTGACAAAAGGATC
GATGATACTACCTCATTAGTCCGATCTGGCTCTGCAGGAGGGAAACTGTG
TAGGTTAAATGTTCGGACAAGAGATTTCTTCCGGGCTATTCTGTAGAGAC
GTGGCAGAATGTTATCGATCAGTAACATAATAATATTGAGAGCCAGCGAA
CGTTGAAAACCAAAGAAATAAATGCACGAAATGTCTTTCAGTA
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protein sequence of NO11G00750.2

>NO11G00750.2-protein ID=NO11G00750.2-protein|Name=NO11G00750.2|organism=Nannochloropsis oceanica|type=polypeptide|length=623bp
MISHDDEDTSSRTPITEPRRLTFAEYRDHVVASFSRGLRLYNLSPRSARA
EALADSSNGEPDDGTSSSTSRHYWRPRRLLSSYVTPSGDVKELMRKKFWH
IGAFILLVGSICTFVSFSYAPQSMLAALGSVQFLSNVFFARFVLSEKITL
RVILATCIIIAGQILIVVYSPHKSREYDAHSLIALYDRIFLIYMGVLVVI
GGGLIFIYRHYKKRKVEGRELSHTDTVLPVTYAMTSAMIGTFSVLQAKCL
SELLRRTLNGDNQLKFFYTWFVLLVWLFLTVFWLHRMNTALRLFDGIFII
PVLQVFWTLFAIMTGGIYFQEFQEYSSKMLALFVFGVLIIFSGVALLSPR
QTTVEAEELFEEILDEEGASSWRGMDTEEESSPSSSNSPPPPSTGDKVNS
LDDPGQINKGHDGHGKGSGRQQQAPQALAAHQANIIHPLRGISAAAMTNG
DCTGEEEYPWPSHLIGISRSPFQALVADGDMADAADAAASDSGGDADYSN
MTLSSRGGESPSKPLPPQIQSKPPTNTKVITGSAACRASSLDVLDKNNSC
LFSFCTLPFIANDQDLTNFLAHVTPTLLSEDPTSTRSVCSSSHRTTPMGE
CEKGGQANVVPDCVGINFSCVA*
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mRNA from alignment at chr11:307113..310103+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00750.2 ID=NO11G00750.2|Name=NO11G00750.2|organism=Nannochloropsis oceanica|type=mRNA|length=2991bp|location=Sequence derived from alignment at chr11:307113..310103+ (Nannochloropsis oceanica)
ACAGAGCCTGCGTGGAAGACGTCGCTCAACTTTTTCGGGGGTTGACCACT
CTAGCGCTCCAAAAAAGCAAGGACAACGCAGCTCTGTCCACGTAACAACG
ATTGCACGTCCTTGCCCTCGACTTTCTGGACTTTAGGGACACGTGGAGGT
GTTATCGCAGTGCCCGGCGCAGCTGGCAGGAGTGAGTCCTTCTTCCAATT
CTTTCTTGTGGTCAACGGGTTTTCCGATCTCAATGCGGTAGCATTCCGGC
CAGGCAATGCGGAGATACAGACTGATATGCACACATTCCCGCGCGTTAAC
GCCACTGTACTATCTTCATTCATCATAAGACAGCAGCACCGGCGGAGCCA
GGCCCCGCATAGCGCAAGAGGTAGATGGGGGTCCCAACATGGAGCGTTGG
GGTGATTATCAACGTCATAGGGTCCATCTCAATCAATTTCGGGACCAATT
TAATGAAGTTTGCGCACAATGAGAAGAATCGACAGCGAAAAGAAATCGAA
TTGTCCGAGCAAGACAGTGAAATCACAGGCGGTGACCAGGTATGAATAAC
GAAACGAATAGACAGACCACTGTCTTCCAACACTTGTGCTATATTACTTT
TCATTCTCGTTCACACACTCCAACAACCCACAGCGCATCCCTTCCACTTC
TTTCGGCACTCTTGCATCCAGTAGCAGCAAGGCCGCCAGTTCACACCTGG
TGGGTGCAAGCAGCAACGACTCTACCCCACCAACCAGGCGCCCCTCCTTG
CAATTAATGATCAGCCACGACGACGAGGACACGTCGTCGCGTACCCCCAT
TACCGAGCCTCGAAGACTGACCTTTGCAGAGTATCGAGATCATGTTGTGG
CATCCTTTAGTCGAGGCCTGCGGCTTTACAACCTTAGTCCCCGCTCTGCC
CGAGCGGAGGCCTTGGCCGACAGCAGCAACGGTGAGCCGGACGACGGGAC
CAGCAGCTCTACATCTCGACATTATTGGAGGCCAAGACGACTGTTATCCA
GTTATGTTACTCCAAGTGGAGATGTCAAGGAATTGATGCGAAAGAAGTTC
TGGCACATCGGCGCCTTCATCCTCTTGGTTGGCAGCATCTGTACCTTTGT
CTCCTTCTCCTACGCCCCCCAGTCCATGCTCGCGGCGTTGGGCTCCGTCC
AATTCCTGAGTAATGTTTTTTTTGCCCGGTTCGTCCTCTCAGAGAAAATC
ACGCTTCGAGTTATCCTGGCCACGTGTATCATCATCGCAGGCCAGATCCT
GATTGTGGTCTACTCTCCCCATAAGAGCCGTGAATACGATGCACACTCCC
TCATAGCTCTCTATGACCGGATCTTCCTCATCTACATGGGCGTTTTGGTA
GTGATAGGAGGAGGCTTAATCTTCATTTATCGACATTACAAAAAAAGGAA
GGTGGAGGGAAGGGAGCTGTCCCACACAGACACGGTGTTGCCGGTGACGT
ATGCGATGACCTCAGCCATGATCGGCACCTTCAGTGTGCTGCAGGCCAAG
TGCCTGTCCGAATTGTTGAGGCGGACCTTAAATGGAGACAACCAGCTCAA
GTTCTTTTATACTTGGTTTGTGCTATTGGTATGGTTGTTCTTGACAGTGT
TCTGGTTGCATCGGATGAACACAGCTTTGCGCCTGTTCGATGGTATTTTT
ATCATTCCCGTGCTGCAGGTCTTCTGGACTCTATTTGCCATTATGACAGG
GGGCATTTATTTCCAGGAATTTCAAGAATACAGCTCCAAAATGTTGGCAT
TGTTTGTTTTCGGCGTCTTGATCATCTTTTCAGGCGTTGCCCTCCTTTCC
CCCCGGCAGACGACGGTGGAGGCAGAGGAGTTGTTCGAGGAGATTCTCGA
CGAGGAAGGCGCATCCTCCTGGAGAGGCATGGACACAGAGGAAGAAAGCA
GCCCTTCTTCATCCAATAGCCCTCCTCCCCCGTCAACGGGCGACAAAGTA
AACTCCCTTGACGACCCAGGGCAGATAAATAAGGGGCATGACGGGCATGG
GAAGGGCAGCGGCAGGCAGCAGCAAGCACCACAGGCGCTGGCGGCGCACC
AGGCCAACATCATCCATCCATTGCGTGGTATATCGGCAGCGGCTATGACG
AATGGTGATTGCACCGGAGAGGAGGAATATCCATGGCCATCGCATCTGAT
AGGCATTTCTCGATCCCCCTTTCAAGCACTCGTCGCCGATGGAGACATGG
CTGATGCTGCTGATGCTGCCGCCAGTGATTCTGGTGGGGATGCCGATTAT
AGTAATATGACTCTTTCCTCCAGAGGGGGCGAAAGCCCGTCTAAGCCGCT
ACCACCTCAGATCCAGAGCAAGCCCCCTACAAACACGAAAGTAATTACTG
GATCGGCGGCGTGCAGAGCATCGAGCCTCGACGTACTAGACAAAAATAAT
TCGTGTCTTTTCTCCTTCTGCACCCTGCCCTTTATTGCCAACGACCAAGA
TCTCACCAACTTTTTGGCCCACGTAACCCCTACCCTGCTGTCCGAGGATC
CCACCTCAACCCGTTCAGTCTGCTCTTCTTCGCATCGGACGACGCCCATG
GGTGAATGCGAAAAGGGTGGGCAAGCAAATGTGGTCCCCGACTGTGTTGG
CATCAACTTTTCGTGTGTCGCGTGATTTCCCGGCTGCGATTTCTGCATCT
GTTCCCTCTTTGCCAAGCAGCGGCCGAGGAGCAGTCAGCAATCGCAATAT
CATAGAGAAGATGACAGCCAGTGTCAAGCACTTCAAAAATATCGACTGTG
ACTGAAGCGACTCGGTGGAGATGAGAGGTGTATAGTGACAAAAGGATCGA
TGATACTACCTCATTAGTCCGATCTGGCTCTGCAGGAGGGAAACTGTGTA
GGTTAAATGTTCGGACAAGAGATTTCTTCCGGGCTATTCTGTAGAGACGT
GGCAGAATGTTATCGATCAGTAACATAATAATATTGAGAGCCAGCGAACG
TTGAAAACCAAAGAAATAAATGCACGAAATGTCTTTCAGTA
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Coding sequence (CDS) from alignment at chr11:307113..310103+

>NO11G00750.2 ID=NO11G00750.2|Name=NO11G00750.2|organism=Nannochloropsis oceanica|type=CDS|length=1869bp|location=Sequence derived from alignment at chr11:307113..310103+ (Nannochloropsis oceanica)
ATGATCAGCCACGACGACGAGGACACGTCGTCGCGTACCCCCATTACCGA
GCCTCGAAGACTGACCTTTGCAGAGTATCGAGATCATGTTGTGGCATCCT
TTAGTCGAGGCCTGCGGCTTTACAACCTTAGTCCCCGCTCTGCCCGAGCG
GAGGCCTTGGCCGACAGCAGCAACGGTGAGCCGGACGACGGGACCAGCAG
CTCTACATCTCGACATTATTGGAGGCCAAGACGACTGTTATCCAGTTATG
TTACTCCAAGTGGAGATGTCAAGGAATTGATGCGAAAGAAGTTCTGGCAC
ATCGGCGCCTTCATCCTCTTGGTTGGCAGCATCTGTACCTTTGTCTCCTT
CTCCTACGCCCCCCAGTCCATGCTCGCGGCGTTGGGCTCCGTCCAATTCC
TGAGTAATGTTTTTTTTGCCCGGTTCGTCCTCTCAGAGAAAATCACGCTT
CGAGTTATCCTGGCCACGTGTATCATCATCGCAGGCCAGATCCTGATTGT
GGTCTACTCTCCCCATAAGAGCCGTGAATACGATGCACACTCCCTCATAG
CTCTCTATGACCGGATCTTCCTCATCTACATGGGCGTTTTGGTAGTGATA
GGAGGAGGCTTAATCTTCATTTATCGACATTACAAAAAAAGGAAGGTGGA
GGGAAGGGAGCTGTCCCACACAGACACGGTGTTGCCGGTGACGTATGCGA
TGACCTCAGCCATGATCGGCACCTTCAGTGTGCTGCAGGCCAAGTGCCTG
TCCGAATTGTTGAGGCGGACCTTAAATGGAGACAACCAGCTCAAGTTCTT
TTATACTTGGTTTGTGCTATTGGTATGGTTGTTCTTGACAGTGTTCTGGT
TGCATCGGATGAACACAGCTTTGCGCCTGTTCGATGGTATTTTTATCATT
CCCGTGCTGCAGGTCTTCTGGACTCTATTTGCCATTATGACAGGGGGCAT
TTATTTCCAGGAATTTCAAGAATACAGCTCCAAAATGTTGGCATTGTTTG
TTTTCGGCGTCTTGATCATCTTTTCAGGCGTTGCCCTCCTTTCCCCCCGG
CAGACGACGGTGGAGGCAGAGGAGTTGTTCGAGGAGATTCTCGACGAGGA
AGGCGCATCCTCCTGGAGAGGCATGGACACAGAGGAAGAAAGCAGCCCTT
CTTCATCCAATAGCCCTCCTCCCCCGTCAACGGGCGACAAAGTAAACTCC
CTTGACGACCCAGGGCAGATAAATAAGGGGCATGACGGGCATGGGAAGGG
CAGCGGCAGGCAGCAGCAAGCACCACAGGCGCTGGCGGCGCACCAGGCCA
ACATCATCCATCCATTGCGTGGTATATCGGCAGCGGCTATGACGAATGGT
GATTGCACCGGAGAGGAGGAATATCCATGGCCATCGCATCTGATAGGCAT
TTCTCGATCCCCCTTTCAAGCACTCGTCGCCGATGGAGACATGGCTGATG
CTGCTGATGCTGCCGCCAGTGATTCTGGTGGGGATGCCGATTATAGTAAT
ATGACTCTTTCCTCCAGAGGGGGCGAAAGCCCGTCTAAGCCGCTACCACC
TCAGATCCAGAGCAAGCCCCCTACAAACACGAAAGTAATTACTGGATCGG
CGGCGTGCAGAGCATCGAGCCTCGACGTACTAGACAAAAATAATTCGTGT
CTTTTCTCCTTCTGCACCCTGCCCTTTATTGCCAACGACCAAGATCTCAC
CAACTTTTTGGCCCACGTAACCCCTACCCTGCTGTCCGAGGATCCCACCT
CAACCCGTTCAGTCTGCTCTTCTTCGCATCGGACGACGCCCATGGGTGAA
TGCGAAAAGGGTGGGCAAGCAAATGTGGTCCCCGACTGTGTTGGCATCAA
CTTTTCGTGTGTCGCGTGA
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Synonyms
Publications