NO11G00430.1, NO11G00430.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G00430.1
Unique Name	NO11G00430.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2206
Alignment location	chr11:185894..188267 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:185894..188267 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO11G00430.1 vs.

BLAST of NO11G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO11G00430	NO11G00430	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00430.1	NO11G00430.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00430.1.cds1	NO11G00430.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00430.1.cds2	NO11G00430.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:185894..188267+
coding sequence from alignment at chr11:185894..188267+

mRNA sequence

>NO11G00430.1 ID=NO11G00430.1|Name=NO11G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=2206bp
ATGGGCGGCAGCCGTAACATGAACAGCTGCGTTCCCTACCCCTTCTACTT
CCCCTCCTTCACCAGCACTCTCACGTCGCCCAACAGTGGAGCACCCTATC
ACTCTTCCTCTGTTTCTCCTTCCATTGCGAGCTTTTGGACCCTCAGCGGT
GCATCCTCCTTCTTCTCCTCCTCCCCCTCCTCCTCCCCCTCCTCCTCCTC
CTCCTCCCCCTCCTCCTCCTCCACCACAACCACCACCACTAGCACCACCA
AAACCACCATGAAGCCTGCCCCGGATCTCCTGTCGCTACCCCATGAAGCC
TTTGTCTATATCATCTCCTTCCTCGAAGGAAGCTTCGCCCTACACACCCT
TCCCTTGGTCGCTCCAGCCATTGACGACCATGTCTACTCCCTCGCCAACG
TCCTCCTATCATTCTCCCTCTCCTACCAGTCCTACTCCCTCTTTCTCCAT
TACGCTCCACACCTCTCTTCCCTCCGCTCTCTCCACCTTCAAGGCAACCG
TGAGCGTCGCATCTTTCATCGTCTACAGCGGCAGCAGCAGCAGCAACACC
CCTCCCTCCCTCCTTCCTTCCTTCCTTCCCCCCCCTTCCATGACGAGAAT
CTTCTCGCCGGCCTCTTTAATCTGGCTACTCAGAGGGAAGAAGAGAGGAA
GGGAGAGGTAGGGGCTACCGCTCCCTTCACTACTCTCCAGGAGCTACGGT
TGGAAGATATCACATTGGAGGAAGGGACGGCTGCTCCCCTCTTCCTCGGC
CGGTTCCTCGCCCTCCTTCCCTTCCTCCGCTCCGTAGCTTTGCCCTCTGT
TCAGCTGAATGATAGGAGTTTGGAGGTCTTGATGGAGGCCTGGGGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGGCGTGTCATGGAGGAGATTGATGTA
TCGGACAACCTCTTAGAGGAGGAAGAGAGTCTTGGGATGCTTTTATCTCG
CTTTCCGAACATGCAGAGACTCAAGTGCGGGCGAAATCTCGTAGACCGCT
CCTCCCTCCCTCCCTACCTCCACCAACACCATCCCTCCTTCCGCCTTGAA
GGGGGCCTCTATTCCTCAGTCCCTCCCTCCCTCGACATCACAATCGTCCC
TCTTCACCCCTCTCTCATTCCAGCCCTCCCTCCCGCCCCCTCCTCATTGA
TGATGCTGGCGTCGGCAGCGATGGGGATGAGGAGGGAGGGAGAGAGGAGG
GAGGAGGAGAAGGAAGAGGAGGAAAAGGAAGAGGAGGAGGAGGAGGAGGA
GGAGCTGAGGGGCTGGTGGATGCGGAGTGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGATGAGGAGGAGAAGGAGGAGGAA
AAGGGAGGGAGGGGTTCTATGGCACTGGCTAAAGAGGAAGCCAATTACAA
GTATGCATCCCCTGCTCTCCTTCCCTCCCTCCCTCCCTTCATTCCTCACT
CCCTCCCCTTCTTCCATACTCCATGTGTCGACCAGCCTTGCCTTCGCCCT
CGAAGGGGAGCAGAGGGGAACATGGGAAGGAAGGAGGGAGGCAGGGAGGG
AGGCAGGGAGGAAAGCAGGGAGTACGTGGCCCATTTTGGTGTGCCTGTCG
CTGGGCGACTCCTTGCAATGGAGGAAGAGGAGGAGCAGGAGAAAGAAAAG
GAGGAAGAGGAGGGCGAGGAAGGGAAGGGAGGAGGGGAGGGAGGGGGGCG
GGTGGTTGGGAAGAAGAGGTGGAGGGGGAGGGAGAACGTAAGCGGGCGCG
GCTATATTCGCCGTACTTCGAATTCCGACGGTAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGAAGGAAGGGTGTAAAAATACATGCGAAAAGATGAAAG
GAGATGTAGATGATTATGGGGTGAGTGGGAGGACAAGAAACAGCGAGAAG
GTGAACGAAAAGCGAGAAGTTGGATGCGTACAACAATCAATCTATGGAGG
AGTAGGACGAAAGACGAACGAATGAAGGCGGAAATGGAGAGAAAGATGGA
CTCAATGATGGAGATGATGATGATGGCGATGAGGAAGAAAAACAAAGAGA
GAAAGATAAAGAAACAGAGCGAGACGAACAAGAAGGAGGCGAAGAGAAGA
ACAAGAAAAAGATAATCAAATAAAAATACAAAAATGTCATCAGAAGAAGA
AGAAGAAGAAGAAGGTAATCAAAATCAAAATACCAAAAAGGTCATTTTTA
AAAACA

protein sequence of NO11G00430.1

>NO11G00430.1-protein ID=NO11G00430.1-protein|Name=NO11G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=609bp
MGGSRNMNSCVPYPFYFPSFTSTLTSPNSGAPYHSSSVSPSIASFWTLSG
ASSFFSSSPSSSPSSSSSSPSSSSTTTTTTSTTKTTMKPAPDLLSLPHEA
FVYIISFLEGSFALHTLPLVAPAIDDHVYSLANVLLSFSLSYQSYSLFLH
YAPHLSSLRSLHLQGNRERRIFHRLQRQQQQQHPSLPPSFLPSPPFHDEN
LLAGLFNLATQREEERKGEVGATAPFTTLQELRLEDITLEEGTAAPLFLG
RFLALLPFLRSVALPSVQLNDRSLEVLMEAWGEGGREGGREGRVMEEIDV
SDNLLEEEESLGMLLSRFPNMQRLKCGRNLVDRSSLPPYLHQHHPSFRLE
GGLYSSVPPSLDITIVPLHPSLIPALPPAPSSLMMLASAAMGMRREGERR
EEEKEEEEKEEEEEEEEELRGWWMRSEEEEEEEEEEEEEEEEDEEEKEEE
KGGRGSMALAKEEANYKYASPALLPSLPPFIPHSLPFFHTPCVDQPCLRP
RRGAEGNMGRKEGGREGGREESREYVAHFGVPVAGRLLAMEEEEEQEKEK
EEEEGEEGKGGGEGGGRVVGKKRWRGRENVSGRGYIRRTSNSDGREGGRE
GGREEGRV*

mRNA from alignment at chr11:185894..188267+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO11G00430.1 ID=NO11G00430.1|Name=NO11G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=2374bp|location=Sequence derived from alignment at chr11:185894..188267+ (Nannochloropsis oceanica)
ATGGGCGGCAGCCGTAACATGAACAGCTGCGTTCCCTACCCCTTCTACTT
CCCCTCCTTCACCAGCACTCTCACGTCGCCCAACAGTGGAGCACCCTATC
ACTCTTCCTCTGTTTCTCCTTCCATTGCGAGCTTTTGGACCCTCAGCGGT
GCATCCTCCTTCTTCTCCTCCTCCCCCTCCTCCTCCCCCTCCTCCTCCTC
CTCCTCCCCCTCCTCCTCCTCCACCACAACCACCACCACTAGCACCACCA
AAACCACCATGAAGCCTGCCCCGGATCTCCTGTCGCTACCCCATGAAGCC
TTTGTCTATATCATCTCCTTCCTCGAAGGAAGCTTCGCCCTACACACCCT
TCCCTTGGTCGCTCCAGCCATTGACGACCATGTCTACTCCCTCGCCAACG
TCCTCCTATCATTCTCCCTCTCCTACCAGTCCTACTCCCTCTTTCTCCAT
TACGCTCCACACCTCTCTTCCCTCCGCTCTCTCCACCTTCAAGGCAACCG
TGAGCGTCGCATCTTTCATCGTCTACAGCGGCAGCAGCAGCAGCAACACC
CCTCCCTCCCTCCTTCCTTCCTTCCTTCCCCCCCCTTCCATGACGAGAAT
CTTCTCGCCGGCCTCTTTAATCTGGCTACTCAGAGGGAAGAAGAGAGGAA
GGGAGAGGTAGGGGCTACCGCTCCCTTCACTACTCTCCAGGAGCTACGGT
TGGAAGATATCACATTGGAGGAAGGGACGGCTGCTCCCCTCTTCCTCGGC
CGGTTCCTCGCCCTCCTTCCCTTCCTCCGCTCCGTAGCTTTGCCCTCTGT
TCAGCTGAATGATAGGAGTTTGGAGGTCTTGATGGAGGCCTGGGGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGGCGTGTCATGGAGGAGATTGATGTA
TCGGACAACCTCTTAGAGGAGGAAGAGAGTCTTGGGATGCTTTTATCTCG
CTTTCCGAACATGCAGGTAGGGAGGGAGATGGGGCGGGAGGGAGAGTAAG
GGACAGGGAAGGTGGACAATATTGGCCCTCCACAAATCTATATTATATCA
TCTTTGTGGACCTATAACTGCACTGGACGTTGAGCCCTCCCTCCTTCCCT
TCCTCCTTCCTCCCCCCCCTCCCCAACTTTGAAGAGACTCAAGTGCGGGC
GAAATCTCGTAGACCGCTCCTCCCTCCCTCCCTACCTCCACCAACACCAT
CCCTCCTTCCGCCTTGAAGGGGGCCTCTATTCCTCAGTCCCTCCCTCCCT
CGACATCACAATCGTCCCTCTTCACCCCTCTCTCATTCCAGCCCTCCCTC
CCGCCCCCTCCTCATTGATGATGCTGGCGTCGGCAGCGATGGGGATGAGG
AGGGAGGGAGAGAGGAGGGAGGAGGAGAAGGAAGAGGAGGAAAAGGAAGA
GGAGGAGGAGGAGGAGGAGGAGCTGAGGGGCTGGTGGATGCGGAGTGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAG
GAGGAGAAGGAGGAGGAAAAGGGAGGGAGGGGTTCTATGGCACTGGCTAA
AGAGGAAGCCAATTACAAGTATGCATCCCCTGCTCTCCTTCCCTCCCTCC
CTCCCTTCATTCCTCACTCCCTCCCCTTCTTCCATACTCCATGTGTCGAC
CAGCCTTGCCTTCGCCCTCGAAGGGGAGCAGAGGGGAACATGGGAAGGAA
GGAGGGAGGCAGGGAGGGAGGCAGGGAGGAAAGCAGGGAGTACGTGGCCC
ATTTTGGTGTGCCTGTCGCTGGGCGACTCCTTGCAATGGAGGAAGAGGAG
GAGCAGGAGAAAGAAAAGGAGGAAGAGGAGGGCGAGGAAGGGAAGGGAGG
AGGGGAGGGAGGGGGGCGGGTGGTTGGGAAGAAGAGGTGGAGGGGGAGGG
AGAACGTAAGCGGGCGCGGCTATATTCGCCGTACTTCGAATTCCGACGGT
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGGTGTAAAAATA
CATGCGAAAAGATGAAAGGAGATGTAGATGATTATGGGGTGAGTGGGAGG
ACAAGAAACAGCGAGAAGGTGAACGAAAAGCGAGAAGTTGGATGCGTACA
ACAATCAATCTATGGAGGAGTAGGACGAAAGACGAACGAATGAAGGCGGA
AATGGAGAGAAAGATGGACTCAATGATGGAGATGATGATGATGGCGATGA
GGAAGAAAAACAAAGAGAGAAAGATAAAGAAACAGAGCGAGACGAACAAG
AAGGAGGCGAAGAGAAGAACAAGAAAAAGATAATCAAATAAAAATACAAA
AATGTCATCAGAAGAAGAAGAAGAAGAAGAAGGTAATCAAAATCAAAATA
CCAAAAAGGTCATTTTTAAAAACA

Coding sequence (CDS) from alignment at chr11:185894..188267+

>NO11G00430.1 ID=NO11G00430.1|Name=NO11G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=1827bp|location=Sequence derived from alignment at chr11:185894..188267+ (Nannochloropsis oceanica)
ATGGGCGGCAGCCGTAACATGAACAGCTGCGTTCCCTACCCCTTCTACTT
CCCCTCCTTCACCAGCACTCTCACGTCGCCCAACAGTGGAGCACCCTATC
ACTCTTCCTCTGTTTCTCCTTCCATTGCGAGCTTTTGGACCCTCAGCGGT
GCATCCTCCTTCTTCTCCTCCTCCCCCTCCTCCTCCCCCTCCTCCTCCTC
CTCCTCCCCCTCCTCCTCCTCCACCACAACCACCACCACTAGCACCACCA
AAACCACCATGAAGCCTGCCCCGGATCTCCTGTCGCTACCCCATGAAGCC
TTTGTCTATATCATCTCCTTCCTCGAAGGAAGCTTCGCCCTACACACCCT
TCCCTTGGTCGCTCCAGCCATTGACGACCATGTCTACTCCCTCGCCAACG
TCCTCCTATCATTCTCCCTCTCCTACCAGTCCTACTCCCTCTTTCTCCAT
TACGCTCCACACCTCTCTTCCCTCCGCTCTCTCCACCTTCAAGGCAACCG
TGAGCGTCGCATCTTTCATCGTCTACAGCGGCAGCAGCAGCAGCAACACC
CCTCCCTCCCTCCTTCCTTCCTTCCTTCCCCCCCCTTCCATGACGAGAAT
CTTCTCGCCGGCCTCTTTAATCTGGCTACTCAGAGGGAAGAAGAGAGGAA
GGGAGAGGTAGGGGCTACCGCTCCCTTCACTACTCTCCAGGAGCTACGGT
TGGAAGATATCACATTGGAGGAAGGGACGGCTGCTCCCCTCTTCCTCGGC
CGGTTCCTCGCCCTCCTTCCCTTCCTCCGCTCCGTAGCTTTGCCCTCTGT
TCAGCTGAATGATAGGAGTTTGGAGGTCTTGATGGAGGCCTGGGGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGGCGTGTCATGGAGGAGATTGATGTA
TCGGACAACCTCTTAGAGGAGGAAGAGAGTCTTGGGATGCTTTTATCTCG
CTTTCCGAACATGCAGAGACTCAAGTGCGGGCGAAATCTCGTAGACCGCT
CCTCCCTCCCTCCCTACCTCCACCAACACCATCCCTCCTTCCGCCTTGAA
GGGGGCCTCTATTCCTCAGTCCCTCCCTCCCTCGACATCACAATCGTCCC
TCTTCACCCCTCTCTCATTCCAGCCCTCCCTCCCGCCCCCTCCTCATTGA
TGATGCTGGCGTCGGCAGCGATGGGGATGAGGAGGGAGGGAGAGAGGAGG
GAGGAGGAGAAGGAAGAGGAGGAAAAGGAAGAGGAGGAGGAGGAGGAGGA
GGAGCTGAGGGGCTGGTGGATGCGGAGTGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGATGAGGAGGAGAAGGAGGAGGAA
AAGGGAGGGAGGGGTTCTATGGCACTGGCTAAAGAGGAAGCCAATTACAA
GTATGCATCCCCTGCTCTCCTTCCCTCCCTCCCTCCCTTCATTCCTCACT
CCCTCCCCTTCTTCCATACTCCATGTGTCGACCAGCCTTGCCTTCGCCCT
CGAAGGGGAGCAGAGGGGAACATGGGAAGGAAGGAGGGAGGCAGGGAGGG
AGGCAGGGAGGAAAGCAGGGAGTACGTGGCCCATTTTGGTGTGCCTGTCG
CTGGGCGACTCCTTGCAATGGAGGAAGAGGAGGAGCAGGAGAAAGAAAAG
GAGGAAGAGGAGGGCGAGGAAGGGAAGGGAGGAGGGGAGGGAGGGGGGCG
GGTGGTTGGGAAGAAGAGGTGGAGGGGGAGGGAGAACGTAAGCGGGCGCG
GCTATATTCGCCGTACTTCGAATTCCGACGGTAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGAAGGAAGGGTGTAA

Synonyms

Publications