NO11G00260.1, NO11G00260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00260.1
Unique NameNO11G00260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length372
Alignment locationchr11:105593..106173 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:105593..106173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO11G00260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00260NO11G00260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00260.1NO11G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00260.1.cds1NO11G00260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00260.1.cds2NO11G00260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00260.1 ID=NO11G00260.1|Name=NO11G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=372bp
ATGCCTAAGCCTATTGAATTCGAACGGCACCATTCCAGGAGAAAGGGCAC
AATCGTCGGAGCATGGAGCAAAGGAGGGACAGAGGGAGGGAGGGCGACAG
AAGACAATATGGAGGATTCAAATACAATTTTTATGCGCCGAGACCGCACA
AGCAAGACCGACGAATCGGAGGGAAGGGTCAAGACGGGACAGTTGGAAGG
AGGGAGGGGGGGGAAGCTCGCTGACCTTTGCGGTCTTGTGACTTTTCTCC
TTCCCCTTGCCTTAATTCTCTCTCCCTGTGATGCCTCCCTTCCCTGCCTT
CCCGAGGAGGAAGGAGAGAGCGTGGAGAAGAGGGGCTCAGTACACATCAC
GATTAAAGGACGGAAACAATGA
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protein sequence of NO11G00260.1

>NO11G00260.1-protein ID=NO11G00260.1-protein|Name=NO11G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MPKPIEFERHHSRRKGTIVGAWSKGGTEGGRATEDNMEDSNTIFMRRDRT
SKTDESEGRVKTGQLEGGRGGKLADLCGLVTFLLPLALILSPCDASLPCL
PEEEGESVEKRGSVHITIKGRKQ*
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mRNA from alignment at chr11:105593..106173+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00260.1 ID=NO11G00260.1|Name=NO11G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=581bp|location=Sequence derived from alignment at chr11:105593..106173+ (Nannochloropsis oceanica)
ATGCCTAAGCCTATTGAATTCGAACGGCACCATTCCAGGAGGTGAGTCGT
TGCTTCCTTCCTTCCCTCTCTTTCTCACTCTATCCCTTCTTCCCTCCCTC
TCTCCCTCCCTCCCTCCTTCTTTCCTTGCTAATCCCGCCTCTCTCTTACA
AATCCACCAAAATAATTGAAGGCGTCCATTCACCTTCTCTTCTCTGTTTT
CCCCAACACACCCCTCTCTCCTTTCTCCCACTGTCTCGGGTTTTTAATAG
AAAGGGCACAATCGTCGGAGCATGGAGCAAAGGAGGGACAGAGGGAGGGA
GGGCGACAGAAGACAATATGGAGGATTCAAATACAATTTTTATGCGCCGA
GACCGCACAAGCAAGACCGACGAATCGGAGGGAAGGGTCAAGACGGGACA
GTTGGAAGGAGGGAGGGGGGGGAAGCTCGCTGACCTTTGCGGTCTTGTGA
CTTTTCTCCTTCCCCTTGCCTTAATTCTCTCTCCCTGTGATGCCTCCCTT
CCCTGCCTTCCCGAGGAGGAAGGAGAGAGCGTGGAGAAGAGGGGCTCAGT
ACACATCACGATTAAAGGACGGAAACAATGA
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Coding sequence (CDS) from alignment at chr11:105593..106173+

>NO11G00260.1 ID=NO11G00260.1|Name=NO11G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=372bp|location=Sequence derived from alignment at chr11:105593..106173+ (Nannochloropsis oceanica)
ATGCCTAAGCCTATTGAATTCGAACGGCACCATTCCAGGAGAAAGGGCAC
AATCGTCGGAGCATGGAGCAAAGGAGGGACAGAGGGAGGGAGGGCGACAG
AAGACAATATGGAGGATTCAAATACAATTTTTATGCGCCGAGACCGCACA
AGCAAGACCGACGAATCGGAGGGAAGGGTCAAGACGGGACAGTTGGAAGG
AGGGAGGGGGGGGAAGCTCGCTGACCTTTGCGGTCTTGTGACTTTTCTCC
TTCCCCTTGCCTTAATTCTCTCTCCCTGTGATGCCTCCCTTCCCTGCCTT
CCCGAGGAGGAAGGAGAGAGCGTGGAGAAGAGGGGCTCAGTACACATCAC
GATTAAAGGACGGAAACAATGA
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Synonyms
Publications