NO11G00160.1, NO11G00160.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G00160.1
Unique Name	NO11G00160.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2762
Alignment location	chr11:69857..72618 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:69857..72618 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO11G00160.1 vs.
Match: EWM26413.1 (hypothetical protein Naga_101468g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 361.7 bits (927), Expect = 4.100e-96
Identity = 198/352 (56.25%), Postives = 251/352 (71.31%), Query Frame = 0

Query:   10 LAVLGGAWAPTAVAQDCPDLVLGAKVQPNAKRGILAGRQKAKITIRLRSLEAAQDVNFKMDLPAGLSVVKLKARPSRMLSPAQSIQNPDGTTVIYWTDFDFKKS--SKRVFQAVVIADDCAPETLDVTALAYLVNATDLSAYCAVPLAEPAVVRVRYPGDKKTGKHASSKPVTCAPTPAPSVNPATPFQLFGEGQRCLQAGQLAPFAPDRRLSALDDGELDSLSDVGGKHRRLPVQIDTPTECFEYCSINGNESTPFFFNWNTVTTQCFCCGGECTLILDPDFNAFKVVEAATGAPSASPSSSPSASPSASPTATPTTSPTATPTASPTATPTTAPTATPSATP--APTVQP 358
            L VLG A+APTAVAQ+CP L L  K +P  KRG+LAG+  A++T+ LRS E   D+NFK+ LP GLS+V+  +RP   + P + ++NPDG+T ++W  FDF K+  +KRVF+A    D CAPETL VT LAYLVNATDL+ YCA PLA PAV+ VRY   KK          TCAPTPAP+VNPA PF LFG+GQRCL+A +LAPF  DRRL +  +G  +    +  +HR L   I TP++CF YCS+NG ES PFFFNWNTVT+QCFCCG  CTLI+DP F+A++V   AT AP+A  +++P+ +P+ASPT TPT SPTA PTA+PTA PT +PTA P+ +P  APT  P
Sbjct:   45 LVVLGIAYAPTAVAQECPTLTLTGKARPGFKRGVLAGKGHARVTVTLRSKEVVDDLNFKLLLPTGLSLVRTSSRPKARIHP-EVVENPDGSTAVFWLGFDFAKAKGNKRVFKAKAKVDACAPETLTVTGLAYLVNATDLTTYCATPLASPAVLNVRYSKAKKVA--------TCAPTPAPTVNPAQPFVLFGDGQRCLEASRLAPF-DDRRLLSSSNGR-EYAHSIHREHRHLQ-SIATPSDCFTYCSLNGGESVPFFFNWNTVTSQCFCCGNVCTLIVDPAFSAYEVTMDATSAPTAVSTATPTPAPTASPTLTPTASPTAVPTATPTAAPTASPTAAPTKSPTAAPTTSP 384

The following BLAST results are available for this feature:

BLAST of NO11G00160.1 vs.

BLAST of NO11G00160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26413.1	4.100e-96	56.25	hypothetical protein Naga_101468g1, partial [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO11G00160	NO11G00160	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00160.1	NO11G00160.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00160.1.cds1	NO11G00160.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:69857..72618-
coding sequence from alignment at chr11:69857..72618-

mRNA sequence

>NO11G00160.1 ID=NO11G00160.1|Name=NO11G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2762bp
TATAGATGTAGAACATCTATATAGTGAGTGCAAGAAGATTTGTCGTATTC
TCCCTTGCTTCTTCGAGACACAAGACATATGATTGTCCTTTCTGGTGGGC
TTGGAATCAATGAGCATGCGGTCCTTGCCCCTGTTTGTGGGCAGCCCTTC
GTCGTGAGAAGCCAAGGCGATGCTGTGTGTGGCCGGGAGGCCCATGCGAC
GAGGCGTTACTTTCTTGGGAGACTTTTTGGGGGCATCACTCGTCCCTCTT
TCCCCTATGTATACCACATGTAGAAACAGACGATACAAACGATCTCACAC
ACCATGCATACACTCATGGGTGACCTCCATGCACGAGGCAGAAAAGGGAG
ATCATACACCGTGGTGTCCGTGGAAATGGGACTTACGTTCTCATTCTCCT
GGTTCTCTCTCACGCTACAGTCTCAAACACTTCATACTTCAAGACACAGA
TACAGATACACGCCGTCTTATAGACTGGTATTCAACCGAGAAGCATGTAC
CTGCCCCTCGCCCTCCCCCTGCTTGCCGTCCTGGGCGGCGCCTGGGCGCC
TACCGCCGTCGCCCAGGACTGTCCCGATCTTGTTCTGGGCGCCAAGGTGC
AACCCAATGCCAAGCGTGGGATCCTGGCAGGCCGACAGAAGGCCAAGATC
ACCATCAGGCTTCGAAGTCTGGAAGCCGCACAGGACGTCAATTTCAAGAT
GGATCTGCCCGCCGGCTTGTCCGTGGTGAAGCTGAAGGCCCGCCCGTCCC
GCATGCTCTCCCCGGCGCAGAGCATCCAGAACCCGGATGGGACGACGGTC
ATCTACTGGACGGACTTTGACTTCAAAAAGAGCTCCAAGCGTGTCTTCCA
GGCCGTGGTGATCGCCGACGACTGTGCCCCTGAGACGCTGGATGTCACTG
CCCTGGCGTACCTTGTCAACGCCACGGACCTGTCCGCTTACTGTGCTGTA
CCCTTGGCCGAGCCCGCGGTCGTGCGTGTGCGGTATCCAGGCGACAAGAA
GACGGGCAAACACGCTTCGTCGAAACCTGTCACATGCGCGCCGACCCCGG
CCCCGAGCGTCAACCCCGCAACTCCCTTCCAACTTTTTGGTGAGGGGCAG
CGATGCTTGCAGGCAGGGCAACTGGCGCCTTTTGCTCCAGATCGCCGTCT
GTCGGCCCTAGATGATGGGGAACTTGATTCGCTAAGCGATGTTGGTGGCA
AGCACCGTCGACTGCCTGTGCAGATTGATACCCCGACGGAGTGCTTCGAA
TACTGCTCGATCAATGGGAATGAATCGACTCCGTTTTTCTTCAACTGGAA
CACGGTGACCACTCAGTGCTTTTGCTGCGGTGGAGAATGTACTTTGATTC
TTGACCCTGATTTCAATGCCTTCAAGGTTGTCGAGGCCGCTACTGGGGCT
CCCTCTGCGTCGCCCTCAAGCAGCCCTTCGGCTTCTCCCTCGGCCTCTCC
AACAGCCACGCCTACTACTTCTCCTACTGCCACGCCTACTGCATCTCCGA
CGGCCACGCCTACGACAGCCCCGACGGCCACGCCTAGTGCGACTCCCGCA
CCTACTGTTCAACCTTGCTTCAACAAGGACGCACTCGTGGTCATGGCGGA
TGGCACGTCTAAGCCCGTTCATGCACTTCGCAGAGGCGACCTCGTCTCGG
TCGACCCGCACAACCTCCATATCCATGCCAAGATGCTTTCTCTTGTTGAG
GCTCCCTTGGGCGTGAATGGTGGCGGCGCGATGATCGACGTATGTGAGCT
TGCCCCAGGCTTTCTGATTAATCCTACGCATCCACTCCTCATGAATGGAA
CCCGCTGGATTCGTCCCCACTGGGAGTTCGCCTGTGACACTAAGAGGCAC
TTCCCGAGCCTCTTTTCGATTGTGTTGGAGGAAGGTCCGCACCATACAGT
TAACATCCAGGGAATTGCCGTGGCCACGTTCGTCAAGTATCCCGTGGGTG
TGCCCATGATTGATCGACCCTACAAGTTGGAGCAGTACCGCATTGTGGAA
CAGAGCCCCGGGTTCGCAACGGGACATGTGGTGATCGACACACTGAAATT
CCTCCAAATCAAGAGGGACTGGCAGCTCGCCAATCCGATTGCTGCGGCGG
AGGACTCTCATCAGGTGTCGTCGCTGCCGCCGGTGTCATCCGTGCATTCC
CCCCACATGGAGCTTTAGGCACGCTTCTAATAAAGTAGAGGTGACGATCG
ATGGTAATGATATACGTATTTTGTCGTTGTCTCCCTCAAGCAGTCTGTCT
GCATTTCTCCCAGTACTATCGTATTTCTATTTCGTCGTAGATCGGTTCAA
ATAAGAGAAAACACCTAAGGAGGCTGGTTGGTCTGTATAAATCGCTCTCC
CTGACCATCCGTAGTCTCCTTCGCCAGATACGTCGATGAAATGTATGAAG
ATTATAGGCTTTACCACGGTCGATATCGATTTCACAAACAAGAAATTACA
ATTTCACAAACAGAAAATTATGCGTAAGGGGGGGTTGATTATTTTCAAAA
TCAGTGAATGAAGAAAGGCATTGGGCATAGAGTCTGGCACTTTTTATTTC
TTCTAAGATATATAGGATGGAAACAGCCCCTCCCAACCAAACAAGAATAT
GCATAGCACATTCGTACAGGCGGACGCTCTTGTTGGTTGCCCCACAAAAC
TAAGGAAATATGTATCAAGAACTTCCCGAAAGAAAAGAGAAGAAAACTTG
AAGAAATGACAAAGAAGAGGAAAAGAGAGAAGAACATATGAACGCATTCC
GGTGTGACCTAA

protein sequence of NO11G00160.1

>NO11G00160.1-protein ID=NO11G00160.1-protein|Name=NO11G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MYLPLALPLLAVLGGAWAPTAVAQDCPDLVLGAKVQPNAKRGILAGRQKA
KITIRLRSLEAAQDVNFKMDLPAGLSVVKLKARPSRMLSPAQSIQNPDGT
TVIYWTDFDFKKSSKRVFQAVVIADDCAPETLDVTALAYLVNATDLSAYC
AVPLAEPAVVRVRYPGDKKTGKHASSKPVTCAPTPAPSVNPATPFQLFGE
GQRCLQAGQLAPFAPDRRLSALDDGELDSLSDVGGKHRRLPVQIDTPTEC
FEYCSINGNESTPFFFNWNTVTTQCFCCGGECTLILDPDFNAFKVVEAAT
GAPSASPSSSPSASPSASPTATPTTSPTATPTASPTATPTTAPTATPSAT
PAPTVQPCFNKDALVVMADGTSKPVHALRRGDLVSVDPHNLHIHAKMLSL
VEAPLGVNGGGAMIDVCELAPGFLINPTHPLLMNGTRWIRPHWEFACDTK
RHFPSLFSIVLEEGPHHTVNIQGIAVATFVKYPVGVPMIDRPYKLEQYRI
VEQSPGFATGHVVIDTLKFLQIKRDWQLANPIAAAEDSHQVSSLPPVSSV
HSPHMEL*

mRNA from alignment at chr11:69857..72618-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO11G00160.1 ID=NO11G00160.1|Name=NO11G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2762bp|location=Sequence derived from alignment at chr11:69857..72618- (Nannochloropsis oceanica)
TATAGATGTAGAACATCTATATAGTGAGTGCAAGAAGATTTGTCGTATTC
TCCCTTGCTTCTTCGAGACACAAGACATATGATTGTCCTTTCTGGTGGGC
TTGGAATCAATGAGCATGCGGTCCTTGCCCCTGTTTGTGGGCAGCCCTTC
GTCGTGAGAAGCCAAGGCGATGCTGTGTGTGGCCGGGAGGCCCATGCGAC
GAGGCGTTACTTTCTTGGGAGACTTTTTGGGGGCATCACTCGTCCCTCTT
TCCCCTATGTATACCACATGTAGAAACAGACGATACAAACGATCTCACAC
ACCATGCATACACTCATGGGTGACCTCCATGCACGAGGCAGAAAAGGGAG
ATCATACACCGTGGTGTCCGTGGAAATGGGACTTACGTTCTCATTCTCCT
GGTTCTCTCTCACGCTACAGTCTCAAACACTTCATACTTCAAGACACAGA
TACAGATACACGCCGTCTTATAGACTGGTATTCAACCGAGAAGCATGTAC
CTGCCCCTCGCCCTCCCCCTGCTTGCCGTCCTGGGCGGCGCCTGGGCGCC
TACCGCCGTCGCCCAGGACTGTCCCGATCTTGTTCTGGGCGCCAAGGTGC
AACCCAATGCCAAGCGTGGGATCCTGGCAGGCCGACAGAAGGCCAAGATC
ACCATCAGGCTTCGAAGTCTGGAAGCCGCACAGGACGTCAATTTCAAGAT
GGATCTGCCCGCCGGCTTGTCCGTGGTGAAGCTGAAGGCCCGCCCGTCCC
GCATGCTCTCCCCGGCGCAGAGCATCCAGAACCCGGATGGGACGACGGTC
ATCTACTGGACGGACTTTGACTTCAAAAAGAGCTCCAAGCGTGTCTTCCA
GGCCGTGGTGATCGCCGACGACTGTGCCCCTGAGACGCTGGATGTCACTG
CCCTGGCGTACCTTGTCAACGCCACGGACCTGTCCGCTTACTGTGCTGTA
CCCTTGGCCGAGCCCGCGGTCGTGCGTGTGCGGTATCCAGGCGACAAGAA
GACGGGCAAACACGCTTCGTCGAAACCTGTCACATGCGCGCCGACCCCGG
CCCCGAGCGTCAACCCCGCAACTCCCTTCCAACTTTTTGGTGAGGGGCAG
CGATGCTTGCAGGCAGGGCAACTGGCGCCTTTTGCTCCAGATCGCCGTCT
GTCGGCCCTAGATGATGGGGAACTTGATTCGCTAAGCGATGTTGGTGGCA
AGCACCGTCGACTGCCTGTGCAGATTGATACCCCGACGGAGTGCTTCGAA
TACTGCTCGATCAATGGGAATGAATCGACTCCGTTTTTCTTCAACTGGAA
CACGGTGACCACTCAGTGCTTTTGCTGCGGTGGAGAATGTACTTTGATTC
TTGACCCTGATTTCAATGCCTTCAAGGTTGTCGAGGCCGCTACTGGGGCT
CCCTCTGCGTCGCCCTCAAGCAGCCCTTCGGCTTCTCCCTCGGCCTCTCC
AACAGCCACGCCTACTACTTCTCCTACTGCCACGCCTACTGCATCTCCGA
CGGCCACGCCTACGACAGCCCCGACGGCCACGCCTAGTGCGACTCCCGCA
CCTACTGTTCAACCTTGCTTCAACAAGGACGCACTCGTGGTCATGGCGGA
TGGCACGTCTAAGCCCGTTCATGCACTTCGCAGAGGCGACCTCGTCTCGG
TCGACCCGCACAACCTCCATATCCATGCCAAGATGCTTTCTCTTGTTGAG
GCTCCCTTGGGCGTGAATGGTGGCGGCGCGATGATCGACGTATGTGAGCT
TGCCCCAGGCTTTCTGATTAATCCTACGCATCCACTCCTCATGAATGGAA
CCCGCTGGATTCGTCCCCACTGGGAGTTCGCCTGTGACACTAAGAGGCAC
TTCCCGAGCCTCTTTTCGATTGTGTTGGAGGAAGGTCCGCACCATACAGT
TAACATCCAGGGAATTGCCGTGGCCACGTTCGTCAAGTATCCCGTGGGTG
TGCCCATGATTGATCGACCCTACAAGTTGGAGCAGTACCGCATTGTGGAA
CAGAGCCCCGGGTTCGCAACGGGACATGTGGTGATCGACACACTGAAATT
CCTCCAAATCAAGAGGGACTGGCAGCTCGCCAATCCGATTGCTGCGGCGG
AGGACTCTCATCAGGTGTCGTCGCTGCCGCCGGTGTCATCCGTGCATTCC
CCCCACATGGAGCTTTAGGCACGCTTCTAATAAAGTAGAGGTGACGATCG
ATGGTAATGATATACGTATTTTGTCGTTGTCTCCCTCAAGCAGTCTGTCT
GCATTTCTCCCAGTACTATCGTATTTCTATTTCGTCGTAGATCGGTTCAA
ATAAGAGAAAACACCTAAGGAGGCTGGTTGGTCTGTATAAATCGCTCTCC
CTGACCATCCGTAGTCTCCTTCGCCAGATACGTCGATGAAATGTATGAAG
ATTATAGGCTTTACCACGGTCGATATCGATTTCACAAACAAGAAATTACA
ATTTCACAAACAGAAAATTATGCGTAAGGGGGGGTTGATTATTTTCAAAA
TCAGTGAATGAAGAAAGGCATTGGGCATAGAGTCTGGCACTTTTTATTTC
TTCTAAGATATATAGGATGGAAACAGCCCCTCCCAACCAAACAAGAATAT
GCATAGCACATTCGTACAGGCGGACGCTCTTGTTGGTTGCCCCACAAAAC
TAAGGAAATATGTATCAAGAACTTCCCGAAAGAAAAGAGAAGAAAACTTG
AAGAAATGACAAAGAAGAGGAAAAGAGAGAAGAACATATGAACGCATTCC
GGTGTGACCTAA

Coding sequence (CDS) from alignment at chr11:69857..72618-

>NO11G00160.1 ID=NO11G00160.1|Name=NO11G00160.1|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at chr11:69857..72618- (Nannochloropsis oceanica)
ATGTACCTGCCCCTCGCCCTCCCCCTGCTTGCCGTCCTGGGCGGCGCCTG
GGCGCCTACCGCCGTCGCCCAGGACTGTCCCGATCTTGTTCTGGGCGCCA
AGGTGCAACCCAATGCCAAGCGTGGGATCCTGGCAGGCCGACAGAAGGCC
AAGATCACCATCAGGCTTCGAAGTCTGGAAGCCGCACAGGACGTCAATTT
CAAGATGGATCTGCCCGCCGGCTTGTCCGTGGTGAAGCTGAAGGCCCGCC
CGTCCCGCATGCTCTCCCCGGCGCAGAGCATCCAGAACCCGGATGGGACG
ACGGTCATCTACTGGACGGACTTTGACTTCAAAAAGAGCTCCAAGCGTGT
CTTCCAGGCCGTGGTGATCGCCGACGACTGTGCCCCTGAGACGCTGGATG
TCACTGCCCTGGCGTACCTTGTCAACGCCACGGACCTGTCCGCTTACTGT
GCTGTACCCTTGGCCGAGCCCGCGGTCGTGCGTGTGCGGTATCCAGGCGA
CAAGAAGACGGGCAAACACGCTTCGTCGAAACCTGTCACATGCGCGCCGA
CCCCGGCCCCGAGCGTCAACCCCGCAACTCCCTTCCAACTTTTTGGTGAG
GGGCAGCGATGCTTGCAGGCAGGGCAACTGGCGCCTTTTGCTCCAGATCG
CCGTCTGTCGGCCCTAGATGATGGGGAACTTGATTCGCTAAGCGATGTTG
GTGGCAAGCACCGTCGACTGCCTGTGCAGATTGATACCCCGACGGAGTGC
TTCGAATACTGCTCGATCAATGGGAATGAATCGACTCCGTTTTTCTTCAA
CTGGAACACGGTGACCACTCAGTGCTTTTGCTGCGGTGGAGAATGTACTT
TGATTCTTGACCCTGATTTCAATGCCTTCAAGGTTGTCGAGGCCGCTACT
GGGGCTCCCTCTGCGTCGCCCTCAAGCAGCCCTTCGGCTTCTCCCTCGGC
CTCTCCAACAGCCACGCCTACTACTTCTCCTACTGCCACGCCTACTGCAT
CTCCGACGGCCACGCCTACGACAGCCCCGACGGCCACGCCTAGTGCGACT
CCCGCACCTACTGTTCAACCTTGCTTCAACAAGGACGCACTCGTGGTCAT
GGCGGATGGCACGTCTAAGCCCGTTCATGCACTTCGCAGAGGCGACCTCG
TCTCGGTCGACCCGCACAACCTCCATATCCATGCCAAGATGCTTTCTCTT
GTTGAGGCTCCCTTGGGCGTGAATGGTGGCGGCGCGATGATCGACGTATG
TGAGCTTGCCCCAGGCTTTCTGATTAATCCTACGCATCCACTCCTCATGA
ATGGAACCCGCTGGATTCGTCCCCACTGGGAGTTCGCCTGTGACACTAAG
AGGCACTTCCCGAGCCTCTTTTCGATTGTGTTGGAGGAAGGTCCGCACCA
TACAGTTAACATCCAGGGAATTGCCGTGGCCACGTTCGTCAAGTATCCCG
TGGGTGTGCCCATGATTGATCGACCCTACAAGTTGGAGCAGTACCGCATT
GTGGAACAGAGCCCCGGGTTCGCAACGGGACATGTGGTGATCGACACACT
GAAATTCCTCCAAATCAAGAGGGACTGGCAGCTCGCCAATCCGATTGCTG
CGGCGGAGGACTCTCATCAGGTGTCGTCGCTGCCGCCGGTGTCATCCGTG
CATTCCCCCCACATGGAGCTTTAG

Synonyms

Publications