NO10G04000.1, NO10G04000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G04000.1
Unique NameNO10G04000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1645
Alignment locationchr10:1188373..1190017 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1188373..1190017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO10G04000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G04000NO10G04000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G04000.1NO10G04000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G04000.1.cds1NO10G04000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G04000.1 ID=NO10G04000.1|Name=NO10G04000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp
ATAATGAAAGATTATAATAGTAGAATGCTTTTTGTAGGTCCTACTGGTGC
CTCTTTCTTCACAATCTCGTCCACCATTGGCCCTTCTTTCCTATCCCCCT
AGGTGCTACCCACCTTCATCATCGCGCTTACTCAATCCCTCAAGCATGAC
CCCCTCGAACATCCGGAGCGCAGACAAGGCGACAAAGACGTATCGTACCC
CCACCAGCAATAGCATTTCCACATGTCGCCGCAGCCGTTGCCCATCCCTC
CTTTCCTCCCATGCTCTCTTCGCTCAACGCACTTTCTCCTCCGATGATGT
GATCCGCTCCATGCTTTCTTACTTGCCGTTGCGCGCTTTGCTGACAGCTT
CCGAAGTCGATACACAGTGGTGGCGTACTAGTACAAAGCCTGAATTGTGG
AAAGCCCTGCTGTTGCGACACTTTGGCTCATCTTTGGCCCCTGTGATAAA
CGCGGTGGAGTTGCAGACCGCTAAGGATGTTACCCCGCGAAGCCACTTAT
CTCTGCATTCCTCCTGCTCTTCGTCCTCCCACCTGTCCCCATCCTCGCAC
CAGTCGACCCTCAAGCGTCTTTTTATCAAGCAGTATCTGGATGTCCATGG
CGCCTGCAAGAAAGTAGAAGACGGCGACGCGGAAGAAGAAGAGGAAGAAG
CACGTTGGAAGAGACATTTTGCTTTCACGTACTTGCAGGTGCAGTTGTGG
GTGATGGAAAACAACGATGGAGAAGAGGACGTAAGAAAACGAAAGAAACG
TTTGTTGGCGAGTGAATCGGTGTGTCTGGCGGACGGGGATGGGCTGCTAC
AACTGTTCGGGGATTATGGAATCCATTTGCGCATAGAGGAAGACGAAAAG
GAACGAGGTCTGGACCTGGAGGATTACGATGCCGTTGCGTCCCTGCAGAC
GACCATGACGTTTTTGGAGGTCGCACAGGATGGAAAGGATGACGTGCGCA
TAGCCAAAGCGCTGTTGTCCACCAATTACGACCTACTCTCGGGTGATGAT
GATCAGGTGGACGACGAATCTGGAGCCTTTGTGCCAGTCTACAGCTTGGG
CGAGGATCACATGCTGCCGTACGACGTTTTGCAGACGGGTACATGCACGC
TTCAACATAGCATACAGCTTCTGATGAACAATTGTGGGAGGGAAGAGAGG
GAAAAGGACGTGGACTCGACAGGCGATGACCCTTCCTTTTCCTTGCACGT
GCATGCCCGCATTTCCATCGTGCGTTTTCAGGAAGACTTCCATTGTGAAT
GTGGGGAGTGTGAAAGGCCTGTGCTAGAGTTTTACGATACGATTATGGTT
TGGCAGCACCTGGCAGCGTGCTTGGCTGGGGTTAGGGACTGGCAGTAGTA
GAAATTCGCGGTTTGGAGGTGGACCTGCTGTGTTCGCAGTCGTAATGGCG
TTGGCATTCAATCTGCTGCCAATTCTGTTGAGTATGCAGGTCGAGGCAAT
AATAAGGCAGAAATGGTAGTGGATCTTGGAAAAAGTAATGGGCGAAAATA
GGAAGCCGGTAAATTGTGGTGTTTGACGAAAGCAAGGTGCATATTCTTCC
AGAAAAGAAATGCGAAGAGAGAGGAAAAGTCTTCGGATATCACCAGAATG
GATGAAACCCAATGTGCAGATCGGAGCCGTAAAGGCTCACGGGGG
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protein sequence of NO10G04000.1

>NO10G04000.1-protein ID=NO10G04000.1-protein|Name=NO10G04000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MTPSNIRSADKATKTYRTPTSNSISTCRRSRCPSLLSSHALFAQRTFSSD
DVIRSMLSYLPLRALLTASEVDTQWWRTSTKPELWKALLLRHFGSSLAPV
INAVELQTAKDVTPRSHLSLHSSCSSSSHLSPSSHQSTLKRLFIKQYLDV
HGACKKVEDGDAEEEEEEARWKRHFAFTYLQVQLWVMENNDGEEDVRKRK
KRLLASESVCLADGDGLLQLFGDYGIHLRIEEDEKERGLDLEDYDAVASL
QTTMTFLEVAQDGKDDVRIAKALLSTNYDLLSGDDDQVDDESGAFVPVYS
LGEDHMLPYDVLQTGTCTLQHSIQLLMNNCGREEREKDVDSTGDDPSFSL
HVHARISIVRFQEDFHCECGECERPVLEFYDTIMVWQHLAACLAGVRDWQ
*
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mRNA from alignment at chr10:1188373..1190017-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G04000.1 ID=NO10G04000.1|Name=NO10G04000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp|location=Sequence derived from alignment at chr10:1188373..1190017- (Nannochloropsis oceanica)
ATAATGAAAGATTATAATAGTAGAATGCTTTTTGTAGGTCCTACTGGTGC
CTCTTTCTTCACAATCTCGTCCACCATTGGCCCTTCTTTCCTATCCCCCT
AGGTGCTACCCACCTTCATCATCGCGCTTACTCAATCCCTCAAGCATGAC
CCCCTCGAACATCCGGAGCGCAGACAAGGCGACAAAGACGTATCGTACCC
CCACCAGCAATAGCATTTCCACATGTCGCCGCAGCCGTTGCCCATCCCTC
CTTTCCTCCCATGCTCTCTTCGCTCAACGCACTTTCTCCTCCGATGATGT
GATCCGCTCCATGCTTTCTTACTTGCCGTTGCGCGCTTTGCTGACAGCTT
CCGAAGTCGATACACAGTGGTGGCGTACTAGTACAAAGCCTGAATTGTGG
AAAGCCCTGCTGTTGCGACACTTTGGCTCATCTTTGGCCCCTGTGATAAA
CGCGGTGGAGTTGCAGACCGCTAAGGATGTTACCCCGCGAAGCCACTTAT
CTCTGCATTCCTCCTGCTCTTCGTCCTCCCACCTGTCCCCATCCTCGCAC
CAGTCGACCCTCAAGCGTCTTTTTATCAAGCAGTATCTGGATGTCCATGG
CGCCTGCAAGAAAGTAGAAGACGGCGACGCGGAAGAAGAAGAGGAAGAAG
CACGTTGGAAGAGACATTTTGCTTTCACGTACTTGCAGGTGCAGTTGTGG
GTGATGGAAAACAACGATGGAGAAGAGGACGTAAGAAAACGAAAGAAACG
TTTGTTGGCGAGTGAATCGGTGTGTCTGGCGGACGGGGATGGGCTGCTAC
AACTGTTCGGGGATTATGGAATCCATTTGCGCATAGAGGAAGACGAAAAG
GAACGAGGTCTGGACCTGGAGGATTACGATGCCGTTGCGTCCCTGCAGAC
GACCATGACGTTTTTGGAGGTCGCACAGGATGGAAAGGATGACGTGCGCA
TAGCCAAAGCGCTGTTGTCCACCAATTACGACCTACTCTCGGGTGATGAT
GATCAGGTGGACGACGAATCTGGAGCCTTTGTGCCAGTCTACAGCTTGGG
CGAGGATCACATGCTGCCGTACGACGTTTTGCAGACGGGTACATGCACGC
TTCAACATAGCATACAGCTTCTGATGAACAATTGTGGGAGGGAAGAGAGG
GAAAAGGACGTGGACTCGACAGGCGATGACCCTTCCTTTTCCTTGCACGT
GCATGCCCGCATTTCCATCGTGCGTTTTCAGGAAGACTTCCATTGTGAAT
GTGGGGAGTGTGAAAGGCCTGTGCTAGAGTTTTACGATACGATTATGGTT
TGGCAGCACCTGGCAGCGTGCTTGGCTGGGGTTAGGGACTGGCAGTAGTA
GAAATTCGCGGTTTGGAGGTGGACCTGCTGTGTTCGCAGTCGTAATGGCG
TTGGCATTCAATCTGCTGCCAATTCTGTTGAGTATGCAGGTCGAGGCAAT
AATAAGGCAGAAATGGTAGTGGATCTTGGAAAAAGTAATGGGCGAAAATA
GGAAGCCGGTAAATTGTGGTGTTTGACGAAAGCAAGGTGCATATTCTTCC
AGAAAAGAAATGCGAAGAGAGAGGAAAAGTCTTCGGATATCACCAGAATG
GATGAAACCCAATGTGCAGATCGGAGCCGTAAAGGCTCACGGGGG
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Coding sequence (CDS) from alignment at chr10:1188373..1190017-

>NO10G04000.1 ID=NO10G04000.1|Name=NO10G04000.1|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at chr10:1188373..1190017- (Nannochloropsis oceanica)
ATGACCCCCTCGAACATCCGGAGCGCAGACAAGGCGACAAAGACGTATCG
TACCCCCACCAGCAATAGCATTTCCACATGTCGCCGCAGCCGTTGCCCAT
CCCTCCTTTCCTCCCATGCTCTCTTCGCTCAACGCACTTTCTCCTCCGAT
GATGTGATCCGCTCCATGCTTTCTTACTTGCCGTTGCGCGCTTTGCTGAC
AGCTTCCGAAGTCGATACACAGTGGTGGCGTACTAGTACAAAGCCTGAAT
TGTGGAAAGCCCTGCTGTTGCGACACTTTGGCTCATCTTTGGCCCCTGTG
ATAAACGCGGTGGAGTTGCAGACCGCTAAGGATGTTACCCCGCGAAGCCA
CTTATCTCTGCATTCCTCCTGCTCTTCGTCCTCCCACCTGTCCCCATCCT
CGCACCAGTCGACCCTCAAGCGTCTTTTTATCAAGCAGTATCTGGATGTC
CATGGCGCCTGCAAGAAAGTAGAAGACGGCGACGCGGAAGAAGAAGAGGA
AGAAGCACGTTGGAAGAGACATTTTGCTTTCACGTACTTGCAGGTGCAGT
TGTGGGTGATGGAAAACAACGATGGAGAAGAGGACGTAAGAAAACGAAAG
AAACGTTTGTTGGCGAGTGAATCGGTGTGTCTGGCGGACGGGGATGGGCT
GCTACAACTGTTCGGGGATTATGGAATCCATTTGCGCATAGAGGAAGACG
AAAAGGAACGAGGTCTGGACCTGGAGGATTACGATGCCGTTGCGTCCCTG
CAGACGACCATGACGTTTTTGGAGGTCGCACAGGATGGAAAGGATGACGT
GCGCATAGCCAAAGCGCTGTTGTCCACCAATTACGACCTACTCTCGGGTG
ATGATGATCAGGTGGACGACGAATCTGGAGCCTTTGTGCCAGTCTACAGC
TTGGGCGAGGATCACATGCTGCCGTACGACGTTTTGCAGACGGGTACATG
CACGCTTCAACATAGCATACAGCTTCTGATGAACAATTGTGGGAGGGAAG
AGAGGGAAAAGGACGTGGACTCGACAGGCGATGACCCTTCCTTTTCCTTG
CACGTGCATGCCCGCATTTCCATCGTGCGTTTTCAGGAAGACTTCCATTG
TGAATGTGGGGAGTGTGAAAGGCCTGTGCTAGAGTTTTACGATACGATTA
TGGTTTGGCAGCACCTGGCAGCGTGCTTGGCTGGGGTTAGGGACTGGCAG
TAG
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Synonyms
Publications