NO10G03940.1, NO10G03940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03940.1
Unique NameNO10G03940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1338
Alignment locationchr10:1165140..1167695 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1165140..1167695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03940.1 vs.
Match: EWM25599.1 (hypothetical protein Naga_101119g1 [Nannochloropsis gaditana])

HSP 1 Score: 148.3 bits (373), Expect = 5.700e-32
Identity = 105/240 (43.75%), Postives = 134/240 (55.83%), Query Frame = 0 
Query:  210 VDPSLHDDVALQLFEPRGPAAVDVAVRSLPGLSLALAIDLCIRYSLVSRLEAMLFSA--SSSSSFSSSSSAEEATARMDRTLTILAMLNHPQHTDPLGLPSLTPVTATAATGSTAEYYPPPPSHPCSVLRRIGLFFSGHGR------LDLVRRLLDGCRRRLSPSAPSSLSPSLPDEIGSDALFLAVLLHDPSLVIDVALASGRREAAAAVLSGGNAGKEGGSEDEEKLMQAWKELYGER 442
            +DP LHD   LQL EPRG +AVD A+  +PG+SLALAIDLCIR+SLVSRLE +LF +  SSS SFSSS   E     + RTL++L  L+    TDP GL SL  V  T  + + A YYPPPPSHPCS +RR+GLFF+ HGR      L L+ R                  P L  EI       A+    P      A+ +GR+E            +EGG E+EE++++AW E   E+
Sbjct:    1 MDPFLHDAAILQLCEPRGASAVDAAIAFMPGVSLALAIDLCIRHSLVSRLERLLFPSLPSSSPSFSSSFPPETEATVLARTLSLLLQLDDSFSTDPQGLASLACVHGTETSAADA-YYPPPPSHPCSAIRRVGLFFAQHGREEEAFFLSLLLR-----------------DPKLTIEI-------ALAAGRPEAA--AAVVAGRQER-----------EEGGEEEEERVVRAWNEFLQEQ 202
The following BLAST results are available for this feature:
BLAST of NO10G03940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25599.15.700e-3243.75hypothetical protein Naga_101119g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03940NO10G03940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03940.1NO10G03940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03940.1.cds1NO10G03940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03940.1.cds2NO10G03940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03940.1.cds3NO10G03940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03940.1.cds4NO10G03940.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03940.1.cds5NO10G03940.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03940.1.cds6NO10G03940.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03940.1.cds7NO10G03940.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03940.1.cds8NO10G03940.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03940.1 ID=NO10G03940.1|Name=NO10G03940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1338bp
ATGCGCAGGCAGGTGGCCACATTAAGTTTCTCACATCCGCATGCCTCTTT
CTATGCCCCCACCACATCGCCAGCCCCGCTCCTCCCTCCCTTCCTCGTCC
TCCCTCCCTCCTTTGTCCCTCCTGTGGGCGGCCGGCACTCTCTTCTACTC
CACTCCGACCTCTGTCCGCTGCTGCCTCCTCGCGTCCACGGCCTTCTCGA
GGGAGGGGGGGGGGGGGAGGAGGAAGGAGGGAGGGAGGGAGGGAACGACG
AGGTGGTGATTTTGGATATGGAGATAGGGAGTGTCAGGCCGTCCGTCCCT
CCCTCCTCCTCCCCCCTTTTGCAAGCCGCCTTGTCTCCTTTGGGTGACGT
GGTTGAGGATCTGGCGCCACCCCAGGACGAGCCGGCCGAATGCCTGTGGC
CTCGACAGAGGCAGTTCAAGTATCTTCACGCCTCCTTCTACCCGACGCCC
GCGCCTCTTCCTCCGGGTACCTTGCAGTTGCTGGCCGTGCATGAGGGGGG
CCTCCTCCTCCGTTCCTCCTCCTCCTCCTCCTCCCTTCACCTCCTCCCCC
TCGACCACCCCACCCTCCGCATGGGCATGCTCCTCGCTGCCGGCCACATC
ACACGAGCTGTCAAGTGGGCGCAGGGCGTGGACCCTTCCCTCCACGATGA
CGTGGCCTTGCAACTCTTCGAGCCCCGTGGACCTGCTGCAGTGGATGTGG
CTGTCAGATCCCTTCCAGGCCTGTCGTTGGCATTGGCCATCGATCTCTGC
ATCCGATATAGCCTCGTCTCCCGCCTTGAAGCCATGCTCTTCTCCGCTTC
TTCTTCCTCCTCCTTCTCCTCCTCCTCATCGGCCGAAGAGGCCACGGCCC
GGATGGATAGGACATTGACCATTCTGGCCATGCTCAACCATCCCCAGCAC
ACCGACCCCCTCGGCCTCCCCTCCTTGACCCCTGTAACTGCAACGGCAGC
AACAGGATCAACAGCAGAGTACTACCCTCCTCCTCCTTCCCACCCTTGCT
CGGTCTTGCGGAGGATTGGGCTCTTTTTCTCGGGCCACGGCCGTCTGGAT
CTCGTCCGTCGTCTCCTCGATGGATGCCGCCGACGCCTTTCCCCCTCTGC
TCCTTCTTCCCTTTCTCCCTCGCTGCCTGATGAGATAGGGAGTGATGCTC
TCTTCCTTGCCGTCCTTCTTCATGATCCATCTCTGGTGATTGACGTGGCT
CTGGCCTCGGGACGGCGAGAGGCTGCGGCGGCTGTGTTAAGTGGGGGCAA
TGCAGGAAAGGAGGGAGGGTCGGAGGATGAAGAAAAATTAATGCAGGCCT
GGAAGGAGCTGTATGGGGAGAGAGTAGGCACATTATGA
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protein sequence of NO10G03940.1

>NO10G03940.1-protein ID=NO10G03940.1-protein|Name=NO10G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MRRQVATLSFSHPHASFYAPTTSPAPLLPPFLVLPPSFVPPVGGRHSLLL
HSDLCPLLPPRVHGLLEGGGGGEEEGGREGGNDEVVILDMEIGSVRPSVP
PSSSPLLQAALSPLGDVVEDLAPPQDEPAECLWPRQRQFKYLHASFYPTP
APLPPGTLQLLAVHEGGLLLRSSSSSSSLHLLPLDHPTLRMGMLLAAGHI
TRAVKWAQGVDPSLHDDVALQLFEPRGPAAVDVAVRSLPGLSLALAIDLC
IRYSLVSRLEAMLFSASSSSSFSSSSSAEEATARMDRTLTILAMLNHPQH
TDPLGLPSLTPVTATAATGSTAEYYPPPPSHPCSVLRRIGLFFSGHGRLD
LVRRLLDGCRRRLSPSAPSSLSPSLPDEIGSDALFLAVLLHDPSLVIDVA
LASGRREAAAAVLSGGNAGKEGGSEDEEKLMQAWKELYGERVGTL*
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mRNA from alignment at chr10:1165140..1167695+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03940.1 ID=NO10G03940.1|Name=NO10G03940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2556bp|location=Sequence derived from alignment at chr10:1165140..1167695+ (Nannochloropsis oceanica)
ATGCGCAGGCAGGTGGCCACATTAAGTTTCTCACATCCGCATGCCTCTTT
CTATGCCCCCACCACATCGCCAGCCCCGCTCCTCCCTCCCTTCCTCGTCC
TCCCTCCCTCCTTTGTCCCTCCTGTGGGCGGCCGGCACTCTCTTCTACTC
CACTCCGACCTCTGTCCGCTGCTGCCTCCTCGCGTCCACGGCCTTCTCGA
GGGAGGGGGGGGGGGGGAGGAGGAAGGAGGGAGGGAGGGAGGGAACGACG
AGGTGGTGATTTTGGATATGGAGATAGGGAGTGTCAGGGTAAGAGGTAGA
AGGAGAGAGGAAGGAAGGGAGGGAGGGAGGGAGGGAAGGGACACCCTCAT
CAACTACATGCACCACTCACTCTCAACTCTCCCTCCCTCCTCTCCTTCTC
TCTCCAGCCGTCCGTCCCTCCCTCCTCCTCCCCCCTTTTGCAAGCCGCCT
TGTCTCCTTTGGGTGACGTGGTTGAGGATCTGGCGCCACCCCAGGACGAG
CCGGCCGAATGCCTGTGGCCTCGACAGAGGCAGTTCAAGTGCGGACGGAG
GGCGGGCGGGCGGGCGGGCGGGCGGGAGGGAGGGAGGGAGGGCAGGTGTT
CATACTCTCGGTCCTATATATACACACACTTATATCATTATGATGAGTTA
GATTATATAGATACATACATAGATACATACATATGTACAAATACATATAC
ATACACATCCACGTATGTATATACATATATAGATAGATATATAGATATAT
AGATATGGATATATAGATATAGATATAGATACAGATGTAGATGCGTGTGT
ATAAACTTATGTATATATATATACATATATCTATATATATATACATAGAT
GTAGATATAGATATATAGATATAGATATATAGATATAGATACAGATGTAG
ATGCGTGTGTGTAAACTTATGTCGTTGTGATGTTTTCTCCGTGATCTTTA
TCATCCTCCAGGTATCTTCACGCCTCCTTCTACCCGACGCCCGCGCCTCT
TCCTCCGGGTACCTTGCAGTTGCTGGCCGTGCATGAGGTAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAAAGACGCGCTCATTTCTTCCCCTT
GGTCATGTTTCTGCTCTCTAGGGGGGCCTCCTCCTCCGTTCCTCCTCCTC
CTCCTCCTCCCTTCACCTCCTCCCCCTCGACCACCCCACCCTCCGCATGG
GCATGCTCCTCGCTGCCGGCCACATCACACGAGCTGTCAAGTGGGCGCAG
GTAGGGAGGGAGAGAGGGAGGGAGGAAGGGAGGGAGGTAATGCTGGTATT
GCTTTTGGCGCACTTTCAGGCATTGAAAAGAATAACCTGCCGTTCCTCAC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCAGGGCGTGGACCCTT
CCCTCCACGATGACGTGGCCTTGCAACTCTTCGAGCCCCGTGGACCTGCT
GCAGTGGATGTGGCTGTCAGATCCCTTCCAGGTAGGGAAGAAGGGAGGGA
GGGAGGTGGGGAAGGAAGGTAGGAAAGGAGGGAGGGAGGGAGGGAGGGGA
GGAAGGAAGGAGGGAAGGAAGATTTTGCTGAGGCTCCTCTTCTTGTCCTT
GTTCTCGTTGATAGGCCTGTCGTTGGCATTGGCCATCGATCTCTGCATCC
GATATAGCCTCGTCTCCCGCCTTGAAGCCATGCTCTTCTCCGCTTCTTCT
TCCTCCTCCTTCTCCTCCTCCTCATCGGCCGAAGAGGCCACGGCCCGGAT
GGATAGGACATTGACCATTCTGGCCATGGTAAATTCCTTTTTCCCTCCCT
TTCTCTCCCTCCCTTTCTCCTTTTCTACTTTCCTTCATCCTTTCCTCCCT
TCTTTTTTGTCGCTCGTCGTGATATCTCTGACCTTCCTTCCCTCCCTCCT
TCCTTGCCTCCTTCCTCTCTTTCCTCCCTCCTTCAGCTCAACCATCCCCA
GCACACCGACCCCCTCGGCCTCCCCTCCTTGACCCCTGTAACTGCAACGG
CAGCAACAGGATCAACAGCAGAGTACTACCCTCCTCCTCCTTCCCACCCT
TGCTCGGTCTTGCGGAGGATTGGGCTCTTTTTCTCGGGCCACGGCCGGTA
AGGAAGGCGTGGTGGGGGGGGGGGGAGGGAGGGAAGGAGAGGGAGGGAGG
GAGGGGGAAAGAGTAGTAATATGATGAGTGATAGTTCTCTGTTCAACGCA
TGAAGTCTGCTCGACATGTATATTAACCCCCCAATTTTCCATCCTCCCTT
ATCCCCCTCAGTCTGGATCTCGTCCGTCGTCTCCTCGATGGATGCCGCCG
ACGCCTTTCCCCCTCTGCTCCTTCTTCCCTTTCTCCCTCGCTGCCTGATG
AGATAGGGAGTGATGCTCTCTTCCTTGCCGTCCTTCTTCATGATCCATCT
CTGGTGATTGACGTGGCTCTGGCCTCGGGACGGCGAGAGGCTGCGGCGGC
TGTGTTAAGTGGGGGCAATGCAGGAAAGGAGGGAGGGTCGGAGGATGAAG
AAAAATTAATGCAGGCCTGGAAGGAGCTGTATGGGGAGAGAGTAGGCACA
TTATGA
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Coding sequence (CDS) from alignment at chr10:1165140..1167695+

>NO10G03940.1 ID=NO10G03940.1|Name=NO10G03940.1|organism=Nannochloropsis oceanica|type=CDS|length=1338bp|location=Sequence derived from alignment at chr10:1165140..1167695+ (Nannochloropsis oceanica)
ATGCGCAGGCAGGTGGCCACATTAAGTTTCTCACATCCGCATGCCTCTTT
CTATGCCCCCACCACATCGCCAGCCCCGCTCCTCCCTCCCTTCCTCGTCC
TCCCTCCCTCCTTTGTCCCTCCTGTGGGCGGCCGGCACTCTCTTCTACTC
CACTCCGACCTCTGTCCGCTGCTGCCTCCTCGCGTCCACGGCCTTCTCGA
GGGAGGGGGGGGGGGGGAGGAGGAAGGAGGGAGGGAGGGAGGGAACGACG
AGGTGGTGATTTTGGATATGGAGATAGGGAGTGTCAGGCCGTCCGTCCCT
CCCTCCTCCTCCCCCCTTTTGCAAGCCGCCTTGTCTCCTTTGGGTGACGT
GGTTGAGGATCTGGCGCCACCCCAGGACGAGCCGGCCGAATGCCTGTGGC
CTCGACAGAGGCAGTTCAAGTATCTTCACGCCTCCTTCTACCCGACGCCC
GCGCCTCTTCCTCCGGGTACCTTGCAGTTGCTGGCCGTGCATGAGGGGGG
CCTCCTCCTCCGTTCCTCCTCCTCCTCCTCCTCCCTTCACCTCCTCCCCC
TCGACCACCCCACCCTCCGCATGGGCATGCTCCTCGCTGCCGGCCACATC
ACACGAGCTGTCAAGTGGGCGCAGGGCGTGGACCCTTCCCTCCACGATGA
CGTGGCCTTGCAACTCTTCGAGCCCCGTGGACCTGCTGCAGTGGATGTGG
CTGTCAGATCCCTTCCAGGCCTGTCGTTGGCATTGGCCATCGATCTCTGC
ATCCGATATAGCCTCGTCTCCCGCCTTGAAGCCATGCTCTTCTCCGCTTC
TTCTTCCTCCTCCTTCTCCTCCTCCTCATCGGCCGAAGAGGCCACGGCCC
GGATGGATAGGACATTGACCATTCTGGCCATGCTCAACCATCCCCAGCAC
ACCGACCCCCTCGGCCTCCCCTCCTTGACCCCTGTAACTGCAACGGCAGC
AACAGGATCAACAGCAGAGTACTACCCTCCTCCTCCTTCCCACCCTTGCT
CGGTCTTGCGGAGGATTGGGCTCTTTTTCTCGGGCCACGGCCGTCTGGAT
CTCGTCCGTCGTCTCCTCGATGGATGCCGCCGACGCCTTTCCCCCTCTGC
TCCTTCTTCCCTTTCTCCCTCGCTGCCTGATGAGATAGGGAGTGATGCTC
TCTTCCTTGCCGTCCTTCTTCATGATCCATCTCTGGTGATTGACGTGGCT
CTGGCCTCGGGACGGCGAGAGGCTGCGGCGGCTGTGTTAAGTGGGGGCAA
TGCAGGAAAGGAGGGAGGGTCGGAGGATGAAGAAAAATTAATGCAGGCCT
GGAAGGAGCTGTATGGGGAGAGAGTAGGCACATTATGA
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Synonyms
Publications