Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr10 genome chr10:1118652..1124159 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G03840.2 vs.
Match: CBN75038.1 (conserved unknown protein [Ectocarpus siliculosus])
HSP 1 Score: 276.6 bits (706), Expect = 2.300e-70
Identity = 172/495 (34.75%), Postives = 260/495 (52.53%), Query Frame = 0
Query: 47 RHDIVLVHTEEKGRCCLAPPQGFEPGRLLIEEDAYIWGNGEDDWCLECDDPSHASSSCPRVLSTYPPSLPP-LLPAIEKWMEER--LERVQTLDRARAWIKALVRLQQEGREGGEEGGEEGGRWLDPLLALTACNIDGCVKDAQKLAKKYPFLLPPSSSPSSSVALAARLLSLLNTNSHELEELGPGSGLFLRACLLEHSCMPNCAFATYGTRLRLVTLTAIEPHAPLSIDYANLYYSPVAARRRVLEETYGFTCSCPACRGDAPDRSRAFTCPSSSSPPLEGGREGGREGGCEGGVVCPFGDEEEQEGGGRWECLRCGRRATEGEIKAFCAAEESVLE----EDPVGIEEVDALLRATPLLHRSHFAVLNGVETVAHELARDPSPG------AAAEAVMAWERVLSTVNEGLSHFFPPKGGKGHAHHPELAVLLDRLAQVKATVGDTAGAQECWRDAYQLASLLTRPDWVPTIDLRRLVEHPPTTRGEVLSYYA 529
RH V+ +T ++GR C+A Q F+ G +L+E+ A++ + D CL C H +S+C ++ P PP LL ++ +E L+ V TLDRAR +I+ ++ +++ LDPL LTA N+ C++ + + P L P + AAR+L LNTNSHELE++ GSGLFL AC++EH C PNC+F T+G +L + + + LSIDY N +Y P A R+ LE+ YGF C+C AC PDR RAF CPS C G VCP GD ++ W CL CG + EI+ AEES+ E D +G+E++DAL++ ++H +H+ V +E A L+ + + G A A AW R++S V E L A H E V LD LAQ + GD GA+E + A++++ +++ + +PT+D++ L E PT+ E+ + Y+
Sbjct: 6 RHFTVM-NTPDRGRVCVAT-QAFKAGDVLLEDLAFVHASELPDRCLACCG-FHEASACFKLKPQGPLPCPPELLEELDAAADEMCDLDAVNTLDRARCFIQCMLMYRKDPLS------------LDPLAPLTAANLPRCLESVVSIRELIPGLFPDGMTNDR----AARILGTLNTNSHELEQV-EGSGLFLMACIMEHDCTPNCSFTTFGDKLWVTAIRQVGEGERLSIDYGNNFYLPTAERKAELEDIYGFVCTCRACT-VLPDRCRAFRCPSKD---------------CRTGKVCPHGDGGDESAERSWGCLACGHQCDPEEIEVLLEAEESLSEALEMADELGVEQIDALVQDARVVHPTHYVVFWALEATAKRLSGESAGGGGRRERVAQAAEAAWARLVSAVEEALP-----------ALHHEKVVYLDALAQSRVVAGDIKGAREAYESAHRVSVMVSGANTIPTLDIKSLAERTPTSANELRARYS 453
The following BLAST results are available for this feature:
BLAST of NO10G03840.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 2.30e-70 / Id = 34.75 Sequence CBN75038.1
Match Name E-value Identity Description
CBN75038.1 2.300e-70 34.75 conserved unknown protein [Ectocarpus siliculosus] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO10G03840.2 ID=NO10G03840.2|Name=NO10G03840.2|organism=Nannochloropsis oceanica|type=mRNA|length=2671bp back to top protein sequence of NO10G03840.2
>NO10G03840.2-protein ID=NO10G03840.2-protein|Name=NO10G03840.2|organism=Nannochloropsis oceanica|type=polypeptide|length=749bp back to top mRNA from alignment at chr10:1118652..1124159+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03840.2 ID=NO10G03840.2|Name=NO10G03840.2|organism=Nannochloropsis oceanica|type=mRNA|length=5508bp|location=Sequence derived from alignment at chr10:1118652..1124159+ (Nannochloropsis oceanica)ATGGTGTCTGGGGCCGCCAAGAAAAAAAAGAAGAGGGCCAACGCCGCCGC
TGCCTCAGCCTCCTCCACCTCTCCCTCCGTTCCGACCTCCTCTCTCCTGG
TGGCAGTGCACGCCCGCCTGGCCCGGGAGCTCCAAGAAAGGCATGACATC
GTCCTCGTCCACACGGAGGAGAAGGGACGATGTTGCCTTGCCCCACCGCA
AGGTTTCGAGCCGGGCCGATTGCTGATCGAGGAGGACGCATACAT GTAGG
TGTATATGGCCGTCTGGCGTAGGACGTGTCTTCAGAGCGCCTTGGACGGC
GAAGAAACAAGTAGGATTACACATAGACTGAAAGAAGTACGATTACCATG
GCACTAATTAAATATCACCTTTTCCCCTTTCCCCCTTCCCATTTAGATGG
GGCAACGGCGAGGACGACTGGTGCCTGGAGTGCGACGACCCAAGCCACGC
TAGCTCCTCGTGTCCTCGTGTCCTGTCCACCTACCCTCCCTCCCTCCCCC
CCTTGCTGCCAGCGATTGAAAAATGGATGGAGGAGAGGCTGGAAAGGGTC
CAGACATTGGATAGGGCGAGGGCATGGATTAAG GTTGAAGGGAGGGAGGG
AGGGAGGGAGGGAGCGAGAGGAGTGGCCGTAGGGAACGAATCTGAAGGGG
GCAAGGAAAGCCATGGGTGCACTAGCAAGCCTTATTTCATGACATGCACA
CATACCCGCACAGGCATTGGTTCGTCTCCAGCAAGAAGGAAGGGAAGGAG
GGGAGGAAGGAGGGGAGGAGGGCGGGCGATGGCTTGACCCGCTCTTGGCG
TTGACGGCGTGCAACATAGACGGTTGTGTTAAGGATGCCCAAAAGCTGGC
GAAAAA GTAAGGAATAGGGGAGGGAGGGAGGGAGGGAATGTTTTAAGCAA
CGAGCCGATCCATCCTTTTTTCCCCTCGTCCTCATTCTCACCTTCTTATC
CAGGTACCCTTTCCTCCTCCCTCCCTCCTCCTCCCCCTCCTCCTCCGTCG
CCCTTGCCGCCCGCCTCCTCTCCCTCCTCAATACCAATTCCCACGAGCTG
GAGGAACTTGGTCCGGGCTCCGGTCTCTTCCTTCGGGCCTGCCTCCTTGA
ACACTCCTGCATGCCCAACTGCGCCTTTGC GTAGGTCGCCGTCCGTCCCT
CCCTCCCTTCCTTCCTCCCTCAGTCTCTTCAGGGAGGGAAGGACAGATGA
CTTTCTCACACTTCTACCTGCACTCGCACTCACATGCCCATACCCCTACA
CACAGAACGTACGGCACGAGGCTGCGGCTGGTGACACTGACGGCCATCGA
GCCCCACGCCCCCCTTTCGATCGACTATGCGAATTTGTACTACTCCCCAG
GTCAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGAGAGGGGCCAGGGAGACTGCGACGACGGTTTTGTGTCTAT
TCGTGCAGTCGATGAAAAGGAGTGCGCGAGTCTGTGTCTAACTCTTCCTG
TCTTCATCCCGTCCTTCCTTCTTCCCCCTCCTCCCTCCTTCCCTCCCTCC
GTCTCTCCCTCCCTCCCTCTTCATCCAAGTCGCTGCCCGAAGGCGGGTCC
TCGAGGAGACTTATGGCTTCACCTGCAGCTGCCCTGCCTGCAGGGGCGAC
GCCCCAGATCGCTCGCGCGCCTTCACCTGCCCCTCCTCCTCCTCTCCTCC
CTTGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGTGAGGGAGGGG
TGGTTTGTCCCTTTGGCGATGAGGAGGAGCAAGAGGGAGGGGGAAGGTGG
GAGTGTCTGCGGTGCGGACGACGGGCGACCGAGGGCGAG GTAAGGGGGTT
GACGAGATGATATGACGATTCTTCCTTCTTCTTCGACTGCTCCCTTGTCC
ATTGCATTCCCGCCTGCCTTCCCTCCCTTCCTCCCCCCCGCCCTTCCTCC
TCAGATCAAAGCCTTCTGTGCAGCAGAAGAGTCAGTGTTGGAAGAAGACC
CGGTGGGGATAGAGGAGGTGGATGCGCTCTTGAGGGCCACGCCGCTATTG
CATCGGTCGCATTTTGCGGTTTTGAACGGGGTGGAG GTGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAAGGAAGGAGAGAGGGAGGGAGGGAGAAC
AGCAAGAGGGGACACACGAACCCACAAGGACAAACTCACACTTATATATT
GCATGCTCCCTACCATGTTATATGCACATACGTACGTGTGATGTCCGATT
CTTTTAAATGATTCGATGATTCAGACGGTAGCGCACGAGCTGGCGCGAGA
TCCTTCTCCTGGAGCTGCTGCCGAGGCGGTGATGGCCTGGGAGCGCGTCC
TCTCTACGGTCAATGAGGGCTTATCCCATTTCTTTCCTCCGAAG GTCAGC
CGATGTGAGGGAGGGAGGGAGGGAGGGAAGTTCAGACCTCCATTTATTCA
CCTTCTTTTTGCTTTTGCTTTGTGGGGGGTGGTATATATATATATATTGA
TACAGGGAGGGAAAGGCCACGCGCACCATCCGGAGCTTGCCGTGCTTCTC
GACCGCCTCGCACAG GTACAGCTTCCTTTTCCTTCCCTCCCTCCCAACTT
CCTGCTTTCCAAACTCACTGTTCTTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCTCCCCTCGATTCGCGCCCAGGTGAAAGCC
ACCGTTGGAGACACCGCCGGTGCACAAGAGTGCTGGCGTGATGCATATCA
ACTTGCCTCCCTCCTCACACGCCCGGACTGGGTCCCTACAATTGACCTTC
GTCG GTACCGTTACAATTGAACCGTTACTCCCTCCCCCTTCCCTCCCTCC
CCCTCTCCCACGCTCCCTTCCACACTCCCTTGCTTCCTCCCTCGCTCTCT
CCCCTCCCTCCGTTTGAGCCTCTAGCAGTTACGTCTGCTTTCCTTCCATT
CCCTTCGCCCCTTCTTCCCCCTCCCCCTTGACCGTTATGCGACTGTTTCT
CAAATTAAATTTCATGCGTTTGGACGATTAGTACATAAGGCCTTATTTGT
CGCCACCATTCACTGAAGCTGAAGCTCCCTCCCTCCCTCCCTCTCTCCCT
CCTTCCCTCCCTCATTCCTATTTTTTTTCAGGCTTGTTGAACACCCTCCC
ACGACGAGGGGAGAGGTCTTGTCGTACTATGCGGAGAGGATCGGCACGCT
CAAGGGCATCGAGCGCGAGATGAAGGAGGAGAAG GTACGGGAGGGAGGGA
ATGAGAGAGGTAGGGAATAAGGGAGGGAGGGAGAGAGGGAGAGCTTGTTT
GTGCGATACTGCGTTTTATGGAAGGAAGGAAGGACGGAAGAGGGGGAGGG
GGAGGAGGGAGGAAGAGGGAGGGAAGGATTTCATTAGGGCGGGTTACGGC
ACCTAGTATATTTCATTCACTTATCTCTTTTTTGGTCATTTCCTCCTCTT
TTTCCCCCCCAATTCGACGTAGAGGATCGCCGCCTCGATGGGGAAAGAGG
AGCAGGAGCATCGGTGGGCAGCACTGAAGGAAAGGTTGGGCAGTGAGGCT
ACCCGGAAAGCCTTGGAAGAAGAG GTGAGACAAGGAGGGAGACAAAGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
AGGCCTTGGCAATGCAGTCCGCTACATTAGGTGTAGGGATATTTCTTCCT
ACTTCCTTTCCTTCCTTCTTCCCTCCTCCCTTCCCTGCCGCCCTTATCAG
GGCCGTTGATGGATGGGCTCGGACACTCATTTCATCGGTGGAATGTTGAC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCAGGGCGTGGTGATCCTAGACACAGCTTTTGGAGCAGCGTGG
GCGGAGGAGTTGAGATCCGACATCATCTTTCTAGTGGAACGCGGAGAAAT
GACGCCGAATCAGACGCAGTTCGGGCCGAAGGAG GTAGGTAGGGAGGTAG
GGAGGTAGGAAGGTAGGGAGGTAGGGAGGTAGGGAGGTAGGGAGGTAGGG
AGGTAGATTTTGTTTCTTTCCGTGTCAGATTATTAATGCTGTGGTTGATG
GCTTCCACGTCTACCTCCGTTTTAATCTCTCCTCCCTTCCTCCGTAGGTC
TACCGCAAACCGTTTATATGGGAGGCGGATCTCCACGACCCCCTGCTCCG
TGCCAGAGTTCCCGCGTTGG GTGAGAAGGGAGGGAGGGAGGGAGGGAAGG
CACGAGCGAAGAGTACTGGCGCTTTCGACACAAACACGAGGGCACGCAGA
TCCACATCTATTAAACCGACCCTACCCCCTTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCTTCCCTCCCTCCCCCCTTCCTTCTCTTTCCCCGCTCTTT
CGCCTTATGCGCCCAGGCGCGCTTCTGGAGAATGAGACATTGACCGAAGG
CTTGCACCTCGCCCTCCCTCCCTCCCTCGGTGGTCTGCAAGGAGGGATGG
GGGGAAGGGCACTGAAAGTGCAAAGGAACGGAGGAGGAGGAGGGAGCTTC
GCCTGTCATTACGATAATCCAGGAAAGCCGAGCAAGCGGAGGCTGACGTG
TTTGGTGTATTTGAATCCTCTGTGGTTGGTAGGGAGGGAGGGAGGGACTC
GGGGGGAAGAGGCGGGAGGACGATCAAGAAGCGAGCGCACACGGTTTTGC
CTGTTTTCAAGATCGGCGAAACAGCGTTGA back to top Coding sequence (CDS) from alignment at chr10:1118652..1124159+
>NO10G03840.2 ID=NO10G03840.2|Name=NO10G03840.2|organism=Nannochloropsis oceanica|type=CDS|length=2247bp|location=Sequence derived from alignment at chr10:1118652..1124159+ (Nannochloropsis oceanica) back to top