Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr10 genome chr10:1058126..1063362 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G03670.1 vs.
Match: EWM25563.1 (acid sphingomyelinase-like phosphodiesterase 3b [Nannochloropsis gaditana])
HSP 1 Score: 590.5 bits (1521), Expect = 6.600e-165
Identity = 300/463 (64.79%), Postives = 351/463 (75.81%), Query Frame = 0
Query: 12 SGNENGDSLPLTRADGH-RGSYQSIPTTTTPLAANNSASSSSSSIGHQQEHQHDDDNLPTVTYTRGTLNISAPSASSFSPSSIISPTSRLWRLTAGE-QRGFHLLQSGAVLAVAALCLGVGVLIGQSQSQVSLNSSYDINPFSHQQLQDAQAEWPAQPLLGNAWTPQDVQSVFTAYHFTDAHIEPLYDKDQVRKGTCRNPDCCKKGKNLCEAFTYNELELPTLGCDPPVSLLEGVLEAMKAVDPDVSYVLFTGDMNAHHLCTEDLVRTTQEEFMRRVNRALPNVPFVYAIGNNDLWPNNKNSEHNFEALYQLQLKHCPQCALFQGPKEEREKNALLFRSAGFYRLRDPAKNLRLLVLNSGLWSPRYDNADLPRSLPDDHMDWVEAELQAAKEGGEKVVMISHIPPGHVRHSEDWSERYLDRYITLCTRYVGTIAAQFYGHHSKEYIRSFSPEVGVLCSAGVTP 473
SG E GD LPLT+ G G Y ++ T L S S S++ Q D N PT+T T L S FS +S + S WR G +R HLL + +L V A LGVG IGQS++ +S S + F L +A+WP LLGN W+P+DV+ +FTAYHFTDAHIEPLYDK V KG CR PDCCKKG+N+CEAFTY+E ELPTLGCDPPVSLLEGVLEAM+AVDP+VSYVLFTGDMNAHHLC E+LVRTTQ EFMRRV+RALP++PFVYAIGNNDLWPN+KNSEHNFEALYQ+QLKHCPQCA+FQG +EE+ +NA FR+ G+YR RD AK++R+LV+NSGLW+PRYDN+DLP +LPD HMDWVE EL+AAKEGGE+VV+ISHIPPGHVRHS DW+ER+LDRYI LCTR+ GTI AQ YGHHSKEYIRSFSPEVGVL SAGVTP
Sbjct: 9 SGGE-GDDLPLTQGAGTWEGGYSAVCEAETTLP---SISERVSTLEMQP-----DRNPPTITRTASNLRTGN---SFFSAASALP--SWPWRPAPGRRERQSHLLYASVLLVVGAFLLGVGFCIGQSRA-ISSRSEGSVKFFPPSGLGQVKADWPTHSLLGNTWSPRDVEPLFTAYHFTDAHIEPLYDKHVVVKGNCRKPDCCKKGENVCEAFTYDESELPTLGCDPPVSLLEGVLEAMQAVDPEVSYVLFTGDMNAHHLCNEELVRTTQNEFMRRVHRALPHLPFVYAIGNNDLWPNSKNSEHNFEALYQVQLKHCPQCAIFQGTEEEKAENARTFRAGGYYRFRDHAKHVRILVVNSGLWAPRYDNSDLPVALPDAHMDWVENELEAAKEGGEQVVLISHIPPGHVRHSADWNERFLDRYIALCTRFAGTITAQLYGHHSKEYIRSFSPEVGVLVSAGVTP 456
The following BLAST results are available for this feature:
BLAST of NO10G03670.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 6.60e-165 / Id = 64.79 Sequence EWM25563.1
Match Name E-value Identity Description
EWM25563.1 6.600e-165 64.79 acid sphingomyelinase-like phosphodiesterase 3b [N... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO10G03670.1 ID=NO10G03670.1|Name=NO10G03670.1|organism=Nannochloropsis oceanica|type=mRNA|length=3289bp back to top protein sequence of NO10G03670.1
>NO10G03670.1-protein ID=NO10G03670.1-protein|Name=NO10G03670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=676bp back to top mRNA from alignment at chr10:1058126..1063362+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03670.1 ID=NO10G03670.1|Name=NO10G03670.1|organism=Nannochloropsis oceanica|type=mRNA|length=5237bp|location=Sequence derived from alignment at chr10:1058126..1063362+ (Nannochloropsis oceanica)ATGGTGCGTCGCAGTGGTAGCAGC
AGCGCCTTTTCTGGGAATGAAAACGGGGATTCCCTACCGCTAACACGTGC
CGATGGTCACCGTGGAAGCTATCAATCTATTCCCACGACCACTACCCCTC
TCGCAGCTAACAACAGTGCCAGCAGCAGCAGCAGCAGCATTGGGCATCAG
CAGGAGCACCAGCACGACGACGACAATCTGCCTACGGTGACCTACACCCG
AGGTACCCTGAATATCAGCGCTCCCTCTGCCTCTTCTTTCTCCCCTTCAT
CGATCATTTCCCCCACCTCCCGGCTCTGGCGTCTGACCGCGGGAGAACAA
CGTGGCTTCCACCTGCTGCAAAGCGGTGCTGTGTTGGCAGTGGCTGCATT
ATGTCTCGGTGTGGGTGTGCTGATCGGCCAATCGCAATCCCAAGTATCGC
TGAACAGCAGCTATGATATCAACCCTTTCTCCCACCAGCAGTTGCAGGAT
GCTCAGGCCGAGTGGCCTGCACAGCCCTTGCTTGGGAATGCATGGACTCC
TCAAGATGTCCAGTCGGTGTTCACGGCCTATCACTTCACCGATGCGCATA
TTGAACCGCTTTATG GTGCGTTTATATATGTATGAACGAGGGGGGAACCG
TTGCTTCCAGCGGGAAGTTTCGCCTGGAGTTCTTTTTGGGTTTCACACCC
TTCCCTTTCATCTTTCCCCTTCCCTCTGTCACATGCATTTAAACGTGCCT
CCCTCCCTCCCTCCCACCCTATTTCCCCTCCTCCCTCCCTTCCTACCCCG
TTTAGACAAGGACCAAGTCCGTAAGGGCACCTGCCGCAACCCCGACTGCT
GTAAGAAGGGCAAAAACCTCTGCGAGGCCTTCACCTACAACGAGCTGGAG
CTCCCTACCCTGGGCTGCGACCCTCCCGTCTCCCTCCTGGAGGGAGTGTT
GGAAGCCATGAAGGCTGTCGACCCGGACGTGTCCTACGTGCTCTTTACAG
GCGACATGAATGCCCACC GTAAGTCCCGCCCTCCCTCCCCCTTTCCTTCT
TCCCCAACCCCCTCGAAAACACAAGCCATCATCCTCTTCTTCTCTCTCCT
TCCCTCCTCCTCTCGCTATTATCATCCTCTCCTTCCTCCCCTCCCTCCAC
CCTTCCCTCTCAACTTCTTAGATCTGTGCACCGAAGACCTGGTCCGGACA
ACCCAAGAGGAATTCATGCGCCGCGTAAATCGGGCTCTGCCCAACGTCCC
ATTCGTTTACGCGATTGGCAAC GTAAGGCCCTCCCTCCCTCCCTCCCGTA
TTTCCCCCCTCAGTGTATCGAGGCAACCGAGCTCTACCCAACATCCCCTT
TTCCTTGGAGCCTTCCCTCCCTCCCTCCCTTCCTTCCTCCCTCCCTCCCT
CTAGCCCCCCTCAATTCCTCACGCCCATTTGCATGCATTATCCATCACCC
TTACACGATCGCTCGCTTCTCTCAATTCCTCCCTCCCTCCCTCTCTCCCT
CCCTCCCCTTTCCCTCAGAACGACCTCTGGCCGAACAACAAGAATTCAGA
GCATAATTTCGAGGCCCTTTATCAGCTTCAGCTTAAGCATTGTCCTCAGT
GTGCGCTCTTTCAAG GTAAAAAAAGAAGGGAAGAAGGGATGGAGAGAGAG
AGTGATGGATAAGAGGAAAGGCTATCTGTGGATCCATTTAATTGAAATCC
ACCGCCTTTTCTTACCTTCGCACCTTCCCTCCCGCCCTCCCAACCTCCCT
CCCGCCCTTATTCCTTTCCCAGGTCCCAAAGAAGAAAGGGAAAAGAATGC
CCTTCTCTTTCGTTCCGCGGGTTTTTATCGTCTCCGAGATCCAGCCAAGA
ACCTACGCCTGTTGGTTCTTAACAGCGGGCTATGGTCCCCGCGGTACGAC
AACGCCGACTTGCCCCGCTCTTTGCCGGACGATCACATG GTATGTGCGTG
ATGGTTGGTCGGTTGCTGGGTCTCTGGTTTATTCGTTTGTGCTTGATTTT
GCGTTGTTTGCTTGGATTGTGCGTGGTTTTTCGTGGTTTGCTTTCCCTTT
TCTCCTTCCTTCTTGCCATTTATTTCGTGCGCCCCGAGGGTGTGCGGGGG
CTGCTGCAAGATGAGTGTCAATACGGGCCTCGCTCACTCTTTTCCAAAGG
AAGCGCACATGGCATCTGGCATTATCGACCTTGCCTTGTATGTCGTCGTG
TCTGGACGAGAAACACCCGTTTCTTTCCCTCTGTCTTTTCGTTTCAGGCA
TCCGGTACCTTTCGTATCTTTCCTCGAGCTGTCGCAGGCTCTCCCTTTTT
CTCCGTCTTCTTTTCGGCCTTTCACTCCTCTTCCTTCCGCTACCGCTGCT
GCTGCTGCCGCTGCTTCATACTCTTTTTGGTCTTAATGCCCGCGCACCTC
ATCCTTTTTCTTCCCTTCCCTCCTCCCTTTCTACCTCCTCTCTCTCCAGG
ACTGGGTTGAAGCCGAGCTGCAGGCCGCGAAGGAGGGAGGGGAGAAGGTC
GTCATGATCTCCCACATCCCTCCCGGGCACGTCCGACATTCAGAGGATTG
GAGTGAGAGGTACCTCGACCGGTACATCACCCTCTGCAC GTAAGGAGGGA
GGGAAGGAGGGAGTGATGGAGGGAGATAGGGCGGGCGGGCGGGAGGAGGG
TTGGGGTTGGCCTCGTGGACATGCCGTTCGTATTTCACTTTCATACCGTT
ACCCAGGCTCCTTACACCTTGCCCTGCCTCCCTTTCTCCCTCCCCCCCTC
CCTTCCTCCCTTCCTTCCTCTCTCCCCCTCAGTCGGTATGTAGGCACGAT
TGCGGCCCAATTCTACGGGCATCATAGCAAGGAGTACATCCGCTCCTTCT
CGCCCGAGGTGGGCGTGTTGTGCTCCGCAGGTGTCACCCCCTCGGCGGAG
GCTCCTTGGCTTTCCCTGGAGAAAAAGATGCGGCGAATCCCACGTTCCGC
CATTTGGTATTCACTGAGAAAG GTATAGTGGCTGGGCTTTGGCGCCGGTG
CCCTCCCTTCCTCCCTCCCATTCTGCCTCTCTCTTTCACACATATCCTTC
CTACTTCCTGGTGGAGGTGTTTACGGGAGAGGATATGTACATTCCTACCA
ACAAATATAAACTTGTATGTGCGTTTTACAAGAGGCGGTATCAACGTCGG
GTTGCGCGTTTCCCCATCGCTCGCTCCTCATACGCATGTCCCTCCTTCCT
TCCCTCCCCCTCCCTCCTTCCCTCCCTCCTTCCTCCCTCCTTCCCTCCCT
AGGCCTTTACGACATGTGGTCATTTTACCTGGACCTGTCGAGCGGCGAGA
ACGACCACCTGGCTGTCCCAGGGAAGAGGTCCGGGGAGAAAGAGAAAGAC
AAGAAGAATTTGGCCGTCCTCCCGCGTGGTGAAGACACAGGGGAGGAAGG
GAAGGAGAGGGGGGTGTTTCTCCCCTCGTCGAGTCGAAAGGACAAGGACC
GGGCAGCGTTTGTGGCGTCGTTGGAAAGGCGTGCAGGGACAGCGGGAGGG
GTCTCGACCAAGTTTATCTCGGCCATTAAGGCCGCGAATAGCAGGGGATG
G GTGCGTTGCTGGAGAATGAGAGAGAAAGAGAGGAAGGGAGGGAGGGAAA
GAGGGAGGCAGATTGGGACGAAATATCAGAAAAACGCAGAAGCTTTTCGA
AAGATCGTTTCATCCACGGTTCTCAAAGAGTTCAATTTTTTATGTACCCG
TGACTTACCATACCCGTCCCTCCGCCCCTCCCTCCCCTCTTCTCTCCCTT
CCACCCTCCCCTTGGAACAGGACCTCATGTACTCCTTCCGGGAGACCTAC
AAGTGTCCTGACGTTTCGCCTGCCTCCATCCACCTGGCTGCCCAGCGCAT
CGTCCGTGATTCCCACTACACTTCTCGGTATGAGATGTATCTGGGAGGGT
TGCACTCACCCTACCGACTCATCACCTGCGACGTGCATACCCGGACGTGG
GACTCCCAGGAGGTGGAGGAGTGCTTTGACAGCCTGTGTGTGTATGACGT
GA back to top Coding sequence (CDS) from alignment at chr10:1058126..1063362+
>NO10G03670.1 ID=NO10G03670.1|Name=NO10G03670.1|organism=Nannochloropsis oceanica|type=CDS|length=2028bp|location=Sequence derived from alignment at chr10:1058126..1063362+ (Nannochloropsis oceanica) back to top