NO10G03480.1, NO10G03480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03480.1
Unique NameNO10G03480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length843
Alignment locationchr10:989383..991182 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:989383..991182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03480.1 vs.
Match: XP_005854419.1 (hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526]; EKU21945.1 hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 297.4 bits (760), Expect = 4.800e-77
Identity = 151/265 (56.98%), Postives = 196/265 (73.96%), Query Frame = 0 
Query:    8 LAAVLVVATAMGQA-SDKNGGPLNRVKRMLQGDTTTTAATAKAFISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSELKGKVPDIVEQLRQITMDEDPAFFDLITGDDPLVKKVLTDPSMLF 272
            +A ++   TA   A S+K GGP+ RVKRM+  D T  AAT+ +   + +IQDSW+ D +L  A+RL+NGDHA ++ DMS+G E++EIF +P+ +Y +LQ  P+F VL GVK L AK KE FTK DS+++LE+YR FV+TAIK MKDMA+PV +A TMQK +++M P T   DG+HRALT EERRMTELV RVE GD  A  +L D +ADSLW   IDLSE KGK P+ ++ LR+I M E+P  FDLITG+DPLV+KVL+DPSMLF
Sbjct:    6 IALLIGAVTACHAAESEKKGGPMQRVKRMMATDAT--AATSTSAGEEEDIQDSWSFDSVLSGARRLINGDHAGILADMSMGKEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIKNMKDMADPVGMATTMQKYSDAMSPVTQNPDGSHRALTEEERRMTELVRRVEEGDPEATGQLHDRIADSLWGNTIDLSEFKGKEPEALKVLREIVMKEEPKVFDLITGEDPLVRKVLSDPSMLF 268
The following BLAST results are available for this feature:
BLAST of NO10G03480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854419.14.800e-7756.98hypothetical protein NGA_0231800 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03480NO10G03480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03480.1NO10G03480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03480.1.cds1NO10G03480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03480.1.cds2NO10G03480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03480.1.cds3NO10G03480.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03480.1.cds4NO10G03480.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03480.1.cds5NO10G03480.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03480.1.cds6NO10G03480.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03480.1 ID=NO10G03480.1|Name=NO10G03480.1|organism=Nannochloropsis oceanica|type=mRNA|length=843bp
ATGTGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCACTGC
CATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCAAGC
GCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCCTTT
ATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCTCAA
GAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTGACA
TGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACCACT
TACGCGATGTTGCAAGCCACACCCTTGTTCAATGTGTTACCCGGCGTGAA
GGCCTTGAGAGCCAAGGCCAAAGAGGACTTCACGAAAACAGATAGCATGG
CCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCATCAAGGGCATG
AAAGACATGGCGAACCCCGTCGCTCTAGCCGAAACCATGCAGAAGGTCGC
GAACTCAATGCAGCCCAGCACTCTGCAGGCTGATGGCACCCACCGGGCCT
TGACGACGGAGGAACGGCGCATGACTGAGCTTGTCGCCCGCGTCGAGAAT
GGCGACTCTGCCGCCGTCGATGAACTTCAAGACAACGTGGCCGACAGCTT
GTGGAATGGAGCTATCGATCTCTCGGAGCTCAAGGGCAAAGTACCGGACA
TCGTCGAGCAGCTCCGCCAAATCACCATGGACGAGGATCCGGCGTTCTTC
GACCTCATCACGGGCGACGACCCTCTTGTGAAAAAGGTGCTCACGGATCC
CAGCATGCTCTTCGGAGTCGGGGCTTCCATGGGCGACCAGTAA
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protein sequence of NO10G03480.1

>NO10G03480.1-protein ID=NO10G03480.1-protein|Name=NO10G03480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MCFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAF
ISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTT
YAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGM
KDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVEN
GDSAAVDELQDNVADSLWNGAIDLSELKGKVPDIVEQLRQITMDEDPAFF
DLITGDDPLVKKVLTDPSMLFGVGASMGDQ*
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mRNA from alignment at chr10:989383..991182+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03480.1 ID=NO10G03480.1|Name=NO10G03480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp|location=Sequence derived from alignment at chr10:989383..991182+ (Nannochloropsis oceanica)
ATGTGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCACTGC
CATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCAAGC
GCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCCTTT
ATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCTCAA
GAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTGACA
TGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACCACT
TACGCGATGTTGCAAGGTAAGACAGAGGGAGAGACTGTGCTCATGGAACA
GATGAAAAGGCAACGACCTGTGGCTCGTCACTCAGCATTTTCCCCGTTTC
CCTGCGCCCGCCCGCCCTTCCTCCCTCTTCCATCCTCTTCCTGCAGCCAC
ACCCTTGTTCAATGTGTTACCCGGCGTGAAGGCCTTGAGAGCCAAGGCCA
AAGAGGACTTCACGAAAACAGATGTACGTATTACAAGAGAAAGCGAATCT
AAGAAAAGTATGCATTCCTTCCCCTCCACAGACCCTCGGCGTCCTTCTCT
TCAAAAAGGGAGAGAATCAAGCAGCTCTTGTATCCTTCCCTTGGAGAAGA
TCAAATGCTCGCTTTTCGCATGTGCTTCCTTTTTTCCTTTGCTTCCATCC
CTGACATCACGTCTTTCTCATTCCATCACACACGCACTTCATCGAAATTA
TAGAGCATGGCCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCAT
CAAGGGCATGAAAGACATGGCGAACCCCGTCGCTCTAGCCGAAACCATGC
AGAAGGTCGCGAACTCAATGCAGCCCAGCACTCTGCAGGCTGATGGCACC
CACCGGGCCTTGACGACGGAGGAACGGCGCATGACTGAGCTTGTCGCCCG
CGTCGAGGTATGTTTCTGTCTTTGTGTGGCGATACGTCATCCCTTCATTG
CGTTCCTTATCCCTCGGCTGACATTTCTCATATGAATTTAACGTGCACCC
CACCCACAGAATGGCGACTCTGCCGCCGTCGATGAACTTCAAGACAACGT
GGCCGACAGCTTGTGGAATGGAGGTAAGCACACGATACTTTTCGCAATAT
GTGGGTGTGTGAATGGGGCGTTTATCCTCAACTACGTGACCTCTTTCATT
CTGTATAGCTATTCCTGGGGGCTTTCGTATGCGATGAAATGAGTTGTGGG
AAGGCTACATGCTTGCGGATGAATGTCCTTTGCTATTCTTTCTCTGAAAT
GTCTGGTCTCAGTCAACTTTCTACGTGATAGTCCACTCCAACAACCACTC
CCCGCCTCGTCTAGTTTTTCCCCCCATCACACCTTCCTTGCGATAGCCAC
GGCTTTGTTCTAATCAATATCAAGCGTCATTTCTGCTGGGTGACTAAATT
TCGTCACTCTGGATGACAAAGTTTCTCTCTCAATGATTCACCCTTTTCTT
CCCCACTCTCTAACCCCCGCCCAGCTATCGATCTCTCGGAGCTCAAGGGC
AAAGTACCGGACATCGTCGAGCAGCTCCGCCAAATCACCATGGACGAGGA
TCCGGCGTTCTTCGACCTCATCACGGGCGACGACCCTCTTGTGAAAAAGT
ACGTTCAAAGAGAGAAAAGCAGAGAAGGGGAAGGGAGAAAAAGGCAAGCA
GCACAGGCACTTACTTTGTATTTCTACACAACCATTACATAGGGTGCTCA
CGGATCCCAGCATGCTCTTCGGAGTCGGGGCTTCCATGGGCGACCAGTAA
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Coding sequence (CDS) from alignment at chr10:989383..991182+

>NO10G03480.1 ID=NO10G03480.1|Name=NO10G03480.1|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at chr10:989383..991182+ (Nannochloropsis oceanica)
ATGTGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCACTGC
CATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCAAGC
GCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCCTTT
ATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCTCAA
GAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTGACA
TGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACCACT
TACGCGATGTTGCAAGCCACACCCTTGTTCAATGTGTTACCCGGCGTGAA
GGCCTTGAGAGCCAAGGCCAAAGAGGACTTCACGAAAACAGATAGCATGG
CCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCATCAAGGGCATG
AAAGACATGGCGAACCCCGTCGCTCTAGCCGAAACCATGCAGAAGGTCGC
GAACTCAATGCAGCCCAGCACTCTGCAGGCTGATGGCACCCACCGGGCCT
TGACGACGGAGGAACGGCGCATGACTGAGCTTGTCGCCCGCGTCGAGAAT
GGCGACTCTGCCGCCGTCGATGAACTTCAAGACAACGTGGCCGACAGCTT
GTGGAATGGAGCTATCGATCTCTCGGAGCTCAAGGGCAAAGTACCGGACA
TCGTCGAGCAGCTCCGCCAAATCACCATGGACGAGGATCCGGCGTTCTTC
GACCTCATCACGGGCGACGACCCTCTTGTGAAAAAGGTGCTCACGGATCC
CAGCATGCTCTTCGGAGTCGGGGCTTCCATGGGCGACCAGTAA
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Synonyms
Publications