NO10G03450.1, NO10G03450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03450.1
Unique NameNO10G03450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length450
Alignment locationchr10:980018..980824 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:980018..980824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03450.1 vs.
Match: EWM25317.1 (hypothetical protein Naga_100281g8 [Nannochloropsis gaditana])

HSP 1 Score: 145.6 bits (366), Expect = 1.200e-31
Identity = 76/148 (51.35%), Postives = 103/148 (69.59%), Query Frame = 0 
Query:    1 MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAFISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIK 149
            MRF  + L    V A    + S+K GGP+ RVKRM+  D T  AATA +   + +IQDSW+ D +L  A+RL+NGDHA ++ DMS+G E++EIF +P+ +Y +LQ  P+F VL GVK L AK KE FTK DS+++LE+YR FV+TAIK
Sbjct:    1 MRFHVIALLIGAVTACHAAE-SEKKGGPMQRVKRMMATDAT--AATATSAGEEEDIQDSWSFDSVLSGARRLINGDHAGILADMSMGKEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIK 145
The following BLAST results are available for this feature:
BLAST of NO10G03450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25317.11.200e-3151.35hypothetical protein Naga_100281g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03450NO10G03450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03450.1NO10G03450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03450.1.cds1NO10G03450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03450.1.cds2NO10G03450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03450.1.cds3NO10G03450.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03450.1 ID=NO10G03450.1|Name=NO10G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=450bp
ATGCGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCACTGC
CATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCAAGC
GCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCCTTT
ATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCTCAA
GAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTGACA
TGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACCACT
TACGCGATGTTGCAAGCCACACCCTTGTTCAATGTGTTACCCGGCGTGAA
GGCCTTGAGAGCCAAGGCCAAAGAGGACTTCACGAAAACAGATAGCATGG
CCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCATCAAGGCATGA
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protein sequence of NO10G03450.1

>NO10G03450.1-protein ID=NO10G03450.1-protein|Name=NO10G03450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAF
ISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTT
YAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKA*
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mRNA from alignment at chr10:980018..980824+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03450.1 ID=NO10G03450.1|Name=NO10G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=807bp|location=Sequence derived from alignment at chr10:980018..980824+ (Nannochloropsis oceanica)
ATGCGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCACTGC
CATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCAAGC
GCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCCTTT
ATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCTCAA
GAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTGACA
TGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACCACT
TACGCGATGTTGCAAGGTAAGACAGAGGGAGAGACTGTGCTCATGGAACA
GACGAAAAGGCAACGACCTGTGCGCGTCACTCAGCATTTTCCCCGTTTCC
CTGCGCCCGCCCGCCCTTCCTCCCTCTTCCATCCTCTTCCTGCAGCCACA
CCCTTGTTCAATGTGTTACCCGGCGTGAAGGCCTTGAGAGCCAAGGCCAA
AGAGGACTTCACGAAAACAGATGTACGTATTACAAGAGAAAGCGAATCTA
AGAAAAGTATGCATTCCTTCCCCTCCACAGACCCTCGGCGTCCTTCTCTT
CAAAAAGGGAGAGAATCAAGCAGCTCTTGTATCCTTCCCTTGGAGAAGAT
CAAATGCTCGCTTTCGCATGTGCTTCCTTTTTTCCTTTGCTCCATCCCTG
ACATCACGTCTTTCTCATTCCATCACACACGCACTTCATCGAAATTATAG
AGCATGGCCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCATCAA
GGCATGA
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Coding sequence (CDS) from alignment at chr10:980018..980824+

>NO10G03450.1 ID=NO10G03450.1|Name=NO10G03450.1|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at chr10:980018..980824+ (Nannochloropsis oceanica)
ATGCGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCACTGC
CATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCAAGC
GCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCCTTT
ATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCTCAA
GAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTGACA
TGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACCACT
TACGCGATGTTGCAAGCCACACCCTTGTTCAATGTGTTACCCGGCGTGAA
GGCCTTGAGAGCCAAGGCCAAAGAGGACTTCACGAAAACAGATAGCATGG
CCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCATCAAGGCATGA
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Synonyms
Publications