NO10G02980.1, NO10G02980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02980.1
Unique NameNO10G02980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1524
Alignment locationchr10:826300..828923 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:826300..828923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02980.1 vs.
Match: EWM25496.1 (hypothetical protein Naga_100032g20 [Nannochloropsis gaditana])

HSP 1 Score: 194.1 bits (492), Expect = 7.700e-46
Identity = 118/264 (44.70%), Postives = 160/264 (60.61%), Query Frame = 0 
Query:  112 SGSSSAGSLSRLLDYDLPLPHDWIHNSQMDINALSFSYSYSYSFAKTPEPSETASRTTTSVVAATAQDTPRHPSQSGEIPIVTMVLLMAGSPEEQKEAIAAIVTYLKAHMQQWFGQNVEITTGAPNLINL--RPRSLQSTSKGRLCTIDAPQDEIYIELRNFDDVAQVQDILTGIMTGTIVLTAGKEGGTSIAVKDSICRAETTLSFVPPPMETLHDTTDAKDMSKPLAPLHIALIVVVGVSVLFAAVFLARRYMVPKPRSAIV 374
            S  SS+GS SRLL YDLPLPHDWI   + D   +S S+SYSYSF+    P  T S +    +A T Q     P+  G IP+V + L++AG+PEEQ   ++A+V Y    +     Q  +I+   P L  L  + R L  T +GRLC+  APQ+   I +RN++D A+VQD L GIM GTI LTA +   T+  VKD IC  ETTLSFVPPP +TL+D   +    +PL+  +I+LI V GV++L   +F+ARR    +PRS +V
Sbjct:   52 SAESSSGSFSRLLAYDLPLPHDWIREYEKDTRDMSQSFSYSYSFSFEYAP--TTSPSLVPAIAPTMQ-----PNLPGTIPVVNLFLVVAGTPEEQFALVSALVLYFIMALDV---QESDISVDTPVLERLLHQSRRLADTDQGRLCSSGAPQNSTSISIRNYEDAAKVQDSLDGIMNGTISLTAVEGDSTTFPVKDGICHGETTLSFVPPPADTLNDKNKSSSEPEPLSATYISLIAVGGVAILCVIIFVARR---RRPRSTVV 302
The following BLAST results are available for this feature:
BLAST of NO10G02980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25496.17.700e-4644.70hypothetical protein Naga_100032g20 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02980NO10G02980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02980.1NO10G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02980.1.cds1NO10G02980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02980.1.cds2NO10G02980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02980.1.cds3NO10G02980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02980.1.cds4NO10G02980.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02980.1.cds5NO10G02980.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02980.1.cds6NO10G02980.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02980.1.cds7NO10G02980.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02980.1 ID=NO10G02980.1|Name=NO10G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp
ATGCGCGGTGTCATGTCCCGCCGGGGTGCAGTCACCCTCCTCGTCATGTG
CCTGTCATGGCTTCCGGGCCCGCTCCATGCCACCAGAGGAGCGACGCCGG
CCGAGGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAGCGCCGGAAGC
TTAAGCCGACTCTTGGACTATGACTTACCTTTGCCCCATGATTGGATACA
TAATTCTCAGATGGACATTAATGCGCTGTCCTTTTCGTATTCCTACTCCT
ACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACGGCCAGTCGCACGGCG
ACGCCGGCCGAGGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAGCGC
CGGAAGCTTAAGCCGACTCTTGGACTATGACTTACCTTTGCCCCATGATT
GGATACATAATTCTCAGATGGACATTAATGCGCTGTCCTTTTCGTATTCC
TACTCCTACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACGGCCAGTCG
CACGACGACCTCGGTGGTGGCCGCCACGGCACAAGACACTCCGAGACACC
CATCTCAATCCGGTGAGATTCCTATTGTGACCATGGTGCTCCTCATGGCG
GGTTCCCCCGAAGAACAGAAGGAGGCCATCGCTGCTATCGTCACCTACCT
CAAGGCACATATGCAGCAATGGTTTGGGCAAAATGTCGAGATCACCACGG
GAGCCCCCAACCTCATCAACCTCCGTCCTCGTTCCCTGCAGTCGACGTCC
AAAGGTCGATTATGTACAATAGATGCTCCCCAAGACGAAATATACATTGA
GCTTCGCAATTTTGACGATGTGGCACAAGTCCAAGACATTTTAACTGGTA
TCATGACAGGCACCATTGTCTTGACAGCTGGAAAGGAGGGCGGTACCTCG
ATCGCGGTGAAGGACTCCATTTGCCGCGCGGAGACGACTCTCAGCTTCGT
GCCCCCGCCGATGGAAACTCTTCACGACACAACCGACGCGAAAGACATGT
CCAAGCCATTGGCTCCTCTCCATATTGCATTGATTGTTGTGGTGGGCGTA
AGCGTCCTCTTTGCGGCCGTCTTCTTGGCCCGCCGTTACATGGTTCCCAA
GCCTCGCTCTGCGATTGTGCTGTCGTCCTAAAACAGGTTGCTAAATGTTG
TGGTGCAACTAAGGCTCATTATTTGAATGGATATGATGAGTGCTTGACCT
AAACATGTATGTATTCTTTGAAAGTGGTTGACTATTCGGGAGAAGCGAGG
GAGGTGTATGTATGTGAGAAAAAACATACTCTCAGGAGACATGGAGATAG
CGCGGATGACAGCAAAAGTCAATCTGCGCATGAAAACTCCGTCTGAGCTA
TGGTATTGTATTCTGGAGTCGAAAGAGAGAAAGGGCGGGTATCATATGTA
TACAGCCGCATTATTTTTGAAATTCTGCACCGCAGGAGCAGTTCTTGCCT
TGTTCGGATCGTCGTGAAGGATTCGTGGTTGGAAAGTTAATTCAACGCTA
AGTGATAAATTGTTATTTTTGCCC
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protein sequence of NO10G02980.1

>NO10G02980.1-protein ID=NO10G02980.1-protein|Name=NO10G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MRGVMSRRGAVTLLVMCLSWLPGPLHATRGATPAEVEPYHVTSGSSSAGS
LSRLLDYDLPLPHDWIHNSQMDINALSFSYSYSYSFAKTPEPSETASRTA
TPAEVEPYHVTSGSSSAGSLSRLLDYDLPLPHDWIHNSQMDINALSFSYS
YSYSFAKTPEPSETASRTTTSVVAATAQDTPRHPSQSGEIPIVTMVLLMA
GSPEEQKEAIAAIVTYLKAHMQQWFGQNVEITTGAPNLINLRPRSLQSTS
KGRLCTIDAPQDEIYIELRNFDDVAQVQDILTGIMTGTIVLTAGKEGGTS
IAVKDSICRAETTLSFVPPPMETLHDTTDAKDMSKPLAPLHIALIVVVGV
SVLFAAVFLARRYMVPKPRSAIVLSS*
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mRNA from alignment at chr10:826300..828923+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02980.1 ID=NO10G02980.1|Name=NO10G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2624bp|location=Sequence derived from alignment at chr10:826300..828923+ (Nannochloropsis oceanica)
ATGCGCGGTGTCATGTCCCGCCGGGGTGCAGTCACCCTCCTCGTCATGTG
CCTGTCATGGCTTCCGGGCCCGCTCCATGCCACCAGAGGAGTAAGTTAGC
TCTCAGAAAGATAATGCGCATCCACAACGTTTCATCCACACATCTCTATT
CCCTTGACTCCATTTTCATGCAATATGCATAAAACAAACAGGCGACGCCG
GCCGAGGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAGCGCCGGAAG
CTTAAGCCGACTCTTGGACTATGACTTACCTTTGCCCCATGATTGGATAC
ATAATGTAAGAGATACCTCCGACAATGGAGAAGGGGAGAGAGCAATTGGC
GTGTTTGGGACGCACTTTGGACCTACTTGTCTACCGTGTCCGGCTCTGAG
GGAGGGGGAGATGAGGACGGATGGAGGTTTCACGTAACTAGAGGGCGGAC
GATGCATTCACCTGCAGTTTATTTGATCACACAATTTTTCCACTACTATG
TAACCCAATGCACAGTCTCAGATGGACATTAATGCGCTGTCCTTTTCGTA
TTCCTACTCCTACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACGGCCA
GTCGCACGGTATGAGTCGTCGACCACATGAGCGAGAATTATCGCTATTGC
TTCATCTTGTCATCACTCGTGAAGCGTATATAATTATGTTGGTGGCGGTC
TTCCTCTACTCTACTACATATGTGTACCTTAAACAGGCGACGCCGGCCGA
GGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAGCGCCGGAAGCTTAA
GCCGACTCTTGGACTATGACTTACCTTTGCCCCATGATTGGATACATAAT
GTAAGAGATACCCCCGACAATGGAGAAGGGGAGAGAGCAATTGGCGTGTT
TGGGACGCACTTTGGACCTACTTGTCTACCGTGTCCGGCTCTGAGGGAGG
GGGAGATGAGGACGGATGGAGGTTTCACGTAACTAGAGGGCGGACGATGC
ATTCACCTGCAGTTTATTTGATCACACAATTTTTCCACTACTATGTAACC
CAATGCACAGTCTCAGATGGACATTAATGCGCTGTCCTTTTCGTATTCCT
ACTCCTACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACGGCCAGTCGC
ACGGTATGAGTCGTCGACCACATGAGCGAGAATTATCGCTATTGCTTCAT
CTTGTCATCACTCGTGAAGCGTATATAATTATGTTGGTGGCGGTCCTGCT
TCATTTTCGTGCTGCTCTCATTCTCTCTTATCACAATTATCCTTCTCCCC
TTCCAATCAGACGACCTCGGTGGTGGCCGCCACGGCACAAGACACTCCGA
GACACCCATCTCAATCCGGTGAGATTCCTATTGTGACCATGGTGCTCCTC
ATGGCGGGTTCCCCCGAAGAACAGAAGGAGGCCATCGCTGCTATCGTCAC
CTACCTCAAGGCACATATGCAGCAATGGTTTGGGCAAAATGTCGAGATCA
CCACGGGAGCCCCCAACCTCATCAACCTCCGTCCTCGTTCCCTGCAGTCG
ACGTCCAAAGGTCGATTATGTACAATAGATGCTCCCCAAGACGAAATATA
CATTGAGCTTCGCAATTTTGACGATGTGGTACGTGTCTAAAATAGAATGA
GTGGGGAGGGACTATTTTGGAGTTTTCCCTATTTGTGGTCACTTGCTCCT
TTAATTATACCGAACACTAGTTGTTCCTCGGGTATTACTTAAAAAGTGAT
TGCCTTTTCCACCATTATTGCATTTTTCCACACTCGTCTCCCCTCCCCTA
TTGTTTTCATTCTTCGACATCAAGCATCTTCTCTCATCTTGCTCAATCTC
TTCCTTTTTTCTCGGCCACACAACTCACTGCAAAGCCATAATACTCCCTT
TCTTCACCATGATTACCCACAGGCACAAGTCCAAGACATTTTAACTGGTA
TCATGACAGGCACCATTGTCTTGACAGCTGGAAAGGAGGGCGGTACCTCG
ATCGCGGTGAAGGACTCCATTTGCCGCGCGGAGACGACTCTCAGCTTCGT
GCCCCCGCCGATGGAAACTCTTCACGACACAACCGACGCGAAAGACATGT
CCAAGCCATTGGCTCCTCTCCATATTGCATTGATTGTTGTGGTGGGCGTA
AGCGTCCTCTTTGCGGCCGTCTTCTTGGCCCGCCGTTACATGGTTCCCAA
GCCTCGCTCTGCGATTGTGCTGTCGTCCTAAAACAGGTTGCTAAATGTTG
TGGTGCAACTAAGGCTCATTATTTGAATGGATATGATGAGTGCTTGACCT
AAACATGTATGTATTCTTTGAAAGTGGTTGACTATTCGGGAGAAGCGAGG
GAGGTGTATGTATGTGAGAAAAAACATACTCTCAGGAGACATGGAGATAG
CGCGGATGACAGCAAAAGTCAATCTGCGCATGAAAACTCCGTCTGAGCTA
TGGTATTGTATTCTGGAGTCGAAAGAGAGAAAGGGCGGGTATCATATGTA
TACAGCCGCATTATTTTTGAAATTCTGCACCGCAGGAGCAGTTCTTGCCT
TGTTCGGATCGTCGTGAAGGATTCGTGGTTGGAAAGTTAATTCAACGCTA
AGTGATAAATTGTTATTTTTGCCC
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Coding sequence (CDS) from alignment at chr10:826300..828923+

>NO10G02980.1 ID=NO10G02980.1|Name=NO10G02980.1|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr10:826300..828923+ (Nannochloropsis oceanica)
ATGCGCGGTGTCATGTCCCGCCGGGGTGCAGTCACCCTCCTCGTCATGTG
CCTGTCATGGCTTCCGGGCCCGCTCCATGCCACCAGAGGAGCGACGCCGG
CCGAGGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAGCGCCGGAAGC
TTAAGCCGACTCTTGGACTATGACTTACCTTTGCCCCATGATTGGATACA
TAATTCTCAGATGGACATTAATGCGCTGTCCTTTTCGTATTCCTACTCCT
ACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACGGCCAGTCGCACGGCG
ACGCCGGCCGAGGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAGCGC
CGGAAGCTTAAGCCGACTCTTGGACTATGACTTACCTTTGCCCCATGATT
GGATACATAATTCTCAGATGGACATTAATGCGCTGTCCTTTTCGTATTCC
TACTCCTACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACGGCCAGTCG
CACGACGACCTCGGTGGTGGCCGCCACGGCACAAGACACTCCGAGACACC
CATCTCAATCCGGTGAGATTCCTATTGTGACCATGGTGCTCCTCATGGCG
GGTTCCCCCGAAGAACAGAAGGAGGCCATCGCTGCTATCGTCACCTACCT
CAAGGCACATATGCAGCAATGGTTTGGGCAAAATGTCGAGATCACCACGG
GAGCCCCCAACCTCATCAACCTCCGTCCTCGTTCCCTGCAGTCGACGTCC
AAAGGTCGATTATGTACAATAGATGCTCCCCAAGACGAAATATACATTGA
GCTTCGCAATTTTGACGATGTGGCACAAGTCCAAGACATTTTAACTGGTA
TCATGACAGGCACCATTGTCTTGACAGCTGGAAAGGAGGGCGGTACCTCG
ATCGCGGTGAAGGACTCCATTTGCCGCGCGGAGACGACTCTCAGCTTCGT
GCCCCCGCCGATGGAAACTCTTCACGACACAACCGACGCGAAAGACATGT
CCAAGCCATTGGCTCCTCTCCATATTGCATTGATTGTTGTGGTGGGCGTA
AGCGTCCTCTTTGCGGCCGTCTTCTTGGCCCGCCGTTACATGGTTCCCAA
GCCTCGCTCTGCGATTGTGCTGTCGTCCTAA
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Synonyms
Publications