NO10G02860.1, NO10G02860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02860.1
Unique NameNO10G02860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1107
Alignment locationchr10:784618..785724 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:784618..785724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02860.1 vs.
Match: EWM25507.1 (Serine hydrolase FSH [Nannochloropsis gaditana])

HSP 1 Score: 239.2 bits (609), Expect = 2.000e-59
Identity = 116/177 (65.54%), Postives = 137/177 (77.40%), Query Frame = 0 
Query:  191 WTDTITDGSLQPRPSKALHYTGLHEKTLPFLRQALAEHEPDGLFAFSQGATAAALLLGALQKEFLREGGMGGGGKGGVVMPKFAILVGGFYPRDKEVGEGLREGGPTVPTLFVGGEADFLVPLERTRELMGCWAKEGGREGGGEDGRVKLHVHGGGHFVPTWKGLFKEEVVRFIEKY 368
            WTD   +GSLQPRPSKALHYTG+ E T+PFL+QALAEH PDGL AFSQGATAAA+LL ALQ    R+   G G K GV +PKFAILVGGF+PRD+ VG+G++EG P +PT+FVGG AD LVPL RTRELM CW +        E G + LH HGGGHFVPTWKG FKE+VVRF++++
Sbjct:  179 WTDQTPEGSLQPRPSKALHYTGVAETTIPFLKQALAEHAPDGLLAFSQGATAAAILLAALQ----RDEREGKGQKEGVSLPKFAILVGGFFPRDEAVGQGVKEGAPRLPTMFVGGAADQLVPLTRTRELMACWDE-------AEKGWITLHEHGGGHFVPTWKGEFKEDVVRFVDRF 344
The following BLAST results are available for this feature:
BLAST of NO10G02860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
10020030040050060070080090010001100SequenceEWM25507.1
Match NameE-valueIdentityDescription
EWM25507.12.000e-5965.54Serine hydrolase FSH [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02860NO10G02860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02860.1NO10G02860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02860.1.cds1NO10G02860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02860.1 ID=NO10G02860.1|Name=NO10G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp
ATGCGACAGCAGAGAGGCAAGGCCCTACTGCTGTGCTTACTTGCTTCTTC
TTCCACTGCGTCTTCTTCCTCTCTCTCGTCCTCGTCCTCGTCACTAGCTT
TTATCCCGTCCTTCCCCTTTTCCTCCTCGTACTTCTCCCCCTGGCGCTTC
ACCACCACCATGTCCAGCAGCAGCAGCAGCAGCAGCAGCATCAACAACAG
CGCCTCTCCTCCCCCTCTCCCTTCCTCCCCTCAACCAACCCACAGACGGA
AGGCCAAAATCCTGTGCTTACACGGGTACCTCCAATCGGCCTCTGTTTTC
CGAGGAAAGATTGGGAGTCTGAGGAAAGGGCTTAAGTCCAAAGCGGAGTT
TATTTTCGTCGACGCCCCCTTCGTGGCTCAAGTCCTGCCGTCGGATGCGC
TGTTGAAGGCGGTTGGGGGCCAGGTTTGCATTGGAAAGGAGAAGGAGGGA
GGGAAGGAGGGCGCGGAGGAGCTCTCGACAGGAGTGACAGGTTTGAAGGT
CACAGAAAAGGAGGAGAATAGAAAGGAGGAAGGGGAGGAGAAAGGGGAGC
GGGGGAGGAGCTGGTGGCATTGGACTGATACCATTACGGATGGCTCATTG
CAGCCGAGGCCGAGCAAGGCTCTCCACTACACGGGTCTGCATGAGAAAAC
CCTGCCCTTCCTCAGACAGGCCCTCGCCGAGCACGAACCAGACGGGTTGT
TCGCTTTCTCACAGGGAGCAACGGCAGCAGCGCTTTTATTGGGAGCGTTG
CAGAAGGAGTTTTTGAGGGAGGGAGGGATGGGTGGAGGGGGGAAGGGAGG
GGTGGTTATGCCTAAGTTTGCGATTTTGGTCGGGGGGTTCTATCCGAGGG
ATAAGGAAGTGGGGGAGGGATTGAGGGAGGGAGGGCCGACAGTGCCCACT
CTCTTTGTGGGAGGGGAGGCAGATTTCTTAGTCCCCTTGGAGCGGACGAG
GGAGTTAATGGGGTGTTGGGCGAAGGAGGGAGGGAGGGAGGGAGGGGGTG
AGGACGGGAGGGTGAAGTTGCATGTGCACGGTGGAGGCCATTTCGTGCCG
ACATGGAAGGGGCTTTTTAAGGAGGAGGTGGTGCGTTTTATCGAGAAGTA
CCACTAA
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protein sequence of NO10G02860.1

>NO10G02860.1-protein ID=NO10G02860.1-protein|Name=NO10G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MRQQRGKALLLCLLASSSTASSSSLSSSSSSLAFIPSFPFSSSYFSPWRF
TTTMSSSSSSSSSINNSASPPPLPSSPQPTHRRKAKILCLHGYLQSASVF
RGKIGSLRKGLKSKAEFIFVDAPFVAQVLPSDALLKAVGGQVCIGKEKEG
GKEGAEELSTGVTGLKVTEKEENRKEEGEEKGERGRSWWHWTDTITDGSL
QPRPSKALHYTGLHEKTLPFLRQALAEHEPDGLFAFSQGATAAALLLGAL
QKEFLREGGMGGGGKGGVVMPKFAILVGGFYPRDKEVGEGLREGGPTVPT
LFVGGEADFLVPLERTRELMGCWAKEGGREGGGEDGRVKLHVHGGGHFVP
TWKGLFKEEVVRFIEKYH*
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mRNA from alignment at chr10:784618..785724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02860.1 ID=NO10G02860.1|Name=NO10G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp|location=Sequence derived from alignment at chr10:784618..785724- (Nannochloropsis oceanica)
ATGCGACAGCAGAGAGGCAAGGCCCTACTGCTGTGCTTACTTGCTTCTTC
TTCCACTGCGTCTTCTTCCTCTCTCTCGTCCTCGTCCTCGTCACTAGCTT
TTATCCCGTCCTTCCCCTTTTCCTCCTCGTACTTCTCCCCCTGGCGCTTC
ACCACCACCATGTCCAGCAGCAGCAGCAGCAGCAGCAGCATCAACAACAG
CGCCTCTCCTCCCCCTCTCCCTTCCTCCCCTCAACCAACCCACAGACGGA
AGGCCAAAATCCTGTGCTTACACGGGTACCTCCAATCGGCCTCTGTTTTC
CGAGGAAAGATTGGGAGTCTGAGGAAAGGGCTTAAGTCCAAAGCGGAGTT
TATTTTCGTCGACGCCCCCTTCGTGGCTCAAGTCCTGCCGTCGGATGCGC
TGTTGAAGGCGGTTGGGGGCCAGGTTTGCATTGGAAAGGAGAAGGAGGGA
GGGAAGGAGGGCGCGGAGGAGCTCTCGACAGGAGTGACAGGTTTGAAGGT
CACAGAAAAGGAGGAGAATAGAAAGGAGGAAGGGGAGGAGAAAGGGGAGC
GGGGGAGGAGCTGGTGGCATTGGACTGATACCATTACGGATGGCTCATTG
CAGCCGAGGCCGAGCAAGGCTCTCCACTACACGGGTCTGCATGAGAAAAC
CCTGCCCTTCCTCAGACAGGCCCTCGCCGAGCACGAACCAGACGGGTTGT
TCGCTTTCTCACAGGGAGCAACGGCAGCAGCGCTTTTATTGGGAGCGTTG
CAGAAGGAGTTTTTGAGGGAGGGAGGGATGGGTGGAGGGGGGAAGGGAGG
GGTGGTTATGCCTAAGTTTGCGATTTTGGTCGGGGGGTTCTATCCGAGGG
ATAAGGAAGTGGGGGAGGGATTGAGGGAGGGAGGGCCGACAGTGCCCACT
CTCTTTGTGGGAGGGGAGGCAGATTTCTTAGTCCCCTTGGAGCGGACGAG
GGAGTTAATGGGGTGTTGGGCGAAGGAGGGAGGGAGGGAGGGAGGGGGTG
AGGACGGGAGGGTGAAGTTGCATGTGCACGGTGGAGGCCATTTCGTGCCG
ACATGGAAGGGGCTTTTTAAGGAGGAGGTGGTGCGTTTTATCGAGAAGTA
CCACTAA
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Coding sequence (CDS) from alignment at chr10:784618..785724-

>NO10G02860.1 ID=NO10G02860.1|Name=NO10G02860.1|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at chr10:784618..785724- (Nannochloropsis oceanica)
ATGCGACAGCAGAGAGGCAAGGCCCTACTGCTGTGCTTACTTGCTTCTTC
TTCCACTGCGTCTTCTTCCTCTCTCTCGTCCTCGTCCTCGTCACTAGCTT
TTATCCCGTCCTTCCCCTTTTCCTCCTCGTACTTCTCCCCCTGGCGCTTC
ACCACCACCATGTCCAGCAGCAGCAGCAGCAGCAGCAGCATCAACAACAG
CGCCTCTCCTCCCCCTCTCCCTTCCTCCCCTCAACCAACCCACAGACGGA
AGGCCAAAATCCTGTGCTTACACGGGTACCTCCAATCGGCCTCTGTTTTC
CGAGGAAAGATTGGGAGTCTGAGGAAAGGGCTTAAGTCCAAAGCGGAGTT
TATTTTCGTCGACGCCCCCTTCGTGGCTCAAGTCCTGCCGTCGGATGCGC
TGTTGAAGGCGGTTGGGGGCCAGGTTTGCATTGGAAAGGAGAAGGAGGGA
GGGAAGGAGGGCGCGGAGGAGCTCTCGACAGGAGTGACAGGTTTGAAGGT
CACAGAAAAGGAGGAGAATAGAAAGGAGGAAGGGGAGGAGAAAGGGGAGC
GGGGGAGGAGCTGGTGGCATTGGACTGATACCATTACGGATGGCTCATTG
CAGCCGAGGCCGAGCAAGGCTCTCCACTACACGGGTCTGCATGAGAAAAC
CCTGCCCTTCCTCAGACAGGCCCTCGCCGAGCACGAACCAGACGGGTTGT
TCGCTTTCTCACAGGGAGCAACGGCAGCAGCGCTTTTATTGGGAGCGTTG
CAGAAGGAGTTTTTGAGGGAGGGAGGGATGGGTGGAGGGGGGAAGGGAGG
GGTGGTTATGCCTAAGTTTGCGATTTTGGTCGGGGGGTTCTATCCGAGGG
ATAAGGAAGTGGGGGAGGGATTGAGGGAGGGAGGGCCGACAGTGCCCACT
CTCTTTGTGGGAGGGGAGGCAGATTTCTTAGTCCCCTTGGAGCGGACGAG
GGAGTTAATGGGGTGTTGGGCGAAGGAGGGAGGGAGGGAGGGAGGGGGTG
AGGACGGGAGGGTGAAGTTGCATGTGCACGGTGGAGGCCATTTCGTGCCG
ACATGGAAGGGGCTTTTTAAGGAGGAGGTGGTGCGTTTTATCGAGAAGTA
CCACTAA
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Synonyms
Publications