NO10G02830.1, NO10G02830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02830.1
Unique NameNO10G02830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1158
Alignment locationchr10:777461..779086 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:777461..779086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02830.1 vs.
Match: CCI41078.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 69.3 bits (168), Expect = 2.000e-8
Identity = 47/129 (36.43%), Postives = 70/129 (54.26%), Query Frame = 0 
Query:    9 SGPLFDRVHATGGSARRDDSATSSAGNNGGGFNEVNSYIESQQRRIQELERINIDLERRLEQQARERMKLERESVENKRAWEAQHTNIGHERDEWRGRYEKELLHMQKLRENNRRLERELHGFLQKKYD 138
            S PLF+R H      R+D        N      E   ++E+Q RR  +LE +N DLE RLEQ+A +R+ L+ +  +++R W+ +   +  ER+ W  RYE+E      + E  RR E+EL+   QKKYD
Sbjct:   48 SVPLFEREH------RKDSQLVQRLQNE---LAEAKRFVEAQARRQNDLEYVNEDLEHRLEQEALDRIALDAQKADDERRWKEERARLESEREMWEKRYEEEHRRRGIVEERLRRAEKELYRMHQKKYD 167
The following BLAST results are available for this feature:
BLAST of NO10G02830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
10020030040050060070080090010001100SequenceCCI41078.1
Match NameE-valueIdentityDescription
CCI41078.12.000e-836.43unnamed protein product [Albugo candida][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02830NO10G02830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02830.1NO10G02830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02830.1.cds1NO10G02830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02830.1.cds2NO10G02830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02830.1.cds3NO10G02830.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02830.1.cds4NO10G02830.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02830.1 ID=NO10G02830.1|Name=NO10G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
CGGGGATGGGTTTGAGCCCAACAAGAGGAGGGGAGGTTGGGCACGTCGGC
TCGGTCGCCGCGTCGGCAATGCATCACATCATACTCTTCCTGTCCGTCTT
GCTTTTGGTGCCGTAACCTACCCGCGCTCTGACCACACTCACAGGTGTCT
GCCTATCCACAAATACATAGATTTGGTGCGGAGCGATGTCGGCAGGCGGG
CGCAAGACCGCCTGAGGGGACGCGTGAGACGACATCATGAACCCTGTTGG
TTTTCGTGGGTCCGGACCGCTCTTTGATCGTGTTCATGCGACGGGGGGGT
CAGCGCGGCGGGATGACAGCGCAACGAGCTCGGCGGGCAACAACGGAGGA
GGCTTTAACGAGGTCAATTCTTATATTGAGTCGCAGCAACGACGCATTCA
AGAGCTAGAGCGGATTAACATCGATCTCGAGCGCCGCCTAGAGCAACAAG
CTCGCGAGAGGATGAAGCTTGAGAGGGAGTCCGTGGAGAACAAGCGGGCA
TGGGAGGCACAGCACACCAACATTGGCCACGAACGTGATGAATGGAGAGG
CCGCTATGAGAAGGAACTCCTGCACATGCAAAAACTCCGCGAGAACAACC
GACGCCTAGAGCGAGAGCTGCATGGTTTCCTTCAAAAGAAGTATGATTTT
ATGCAGATGCAGTCGAGGTCGGCCTCGGGGAGCACTGGAGGTGGTAGTGG
TGGTGGTGGAGGAGGAGGAGTAGGGGGGGGAGGGGGAACGAAAGGTGGGC
AGCCACTTTTAAACGGACGGGAAGGTGACTCACATGGCGGAACGCGGAGC
ATGCGCGCGGCGACGATGGGAAGCAGCGGTGGGCGAGGAGGAGAGCGAGG
AGAGGGAGGGGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGA
GAGTTGGCATAGGGGCTGGGGAAGCCGTGCCGCTTAACCCAAAAGACCTC
ACCCCTGAGACAATGAGGGAGAAGCGCGTTATCCAGACGATGTGCGACTT
TTTTGGCTTTTGAAAAGTGTGGGTTTGGTTGCGAGCAGTCCATTTGTCTT
GCACAGCATGCAAATGCCACGAACTCTCTCCTTAAGAATGACCGTGTACA
TATACAATCTTCCCTTTTCATCACTTGTCATCACAAAGAAATGAAACACG
AATACGTA
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protein sequence of NO10G02830.1

>NO10G02830.1-protein ID=NO10G02830.1-protein|Name=NO10G02830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MNPVGFRGSGPLFDRVHATGGSARRDDSATSSAGNNGGGFNEVNSYIESQ
QRRIQELERINIDLERRLEQQARERMKLERESVENKRAWEAQHTNIGHER
DEWRGRYEKELLHMQKLRENNRRLERELHGFLQKKYDFMQMQSRSASGST
GGGSGGGGGGGVGGGGGTKGGQPLLNGREGDSHGGTRSMRAATMGSSGGR
GGERGEGGGGGGGGGGGGGGERVGIGAGEAVPLNPKDLTPETMREKRVIQ
TMCDFFGF*
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mRNA from alignment at chr10:777461..779086-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02830.1 ID=NO10G02830.1|Name=NO10G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp|location=Sequence derived from alignment at chr10:777461..779086- (Nannochloropsis oceanica)
CGGGGATGGGTTTGAGCCCAACAAGAGGAGGGGAGGTTGGGCACGTCGGC
TCGGTCGCCGCGTCGGCAATGCATCACATCATACTCTTCCTGTCCGTCTT
GCTTTTGGTGCCGTAACCTACCCGCGCTCTGACCACACTCACAGGTGTCT
GCCTATCCACAAATACATAGATTTGGTGCGGAGCGATGTCGGCAGGCGGG
CGCAAGACCGCCTGAGGGGACGCGTGAGACGACATCATGGTGAGTGCGCT
ACCACGGTCACGTTTATTCCTTGACTTATCCGTAAGACACTGCCATCTTT
GCATGCATTCCCGGTACCACCTTGCGTATATTATGCCCTTCTCATACAAC
CTGTCATCTTGTGGAAACAGAACCCTGTTGGTTTTCGTGGGTCCGGACCG
CTCTTTGATCGTGTTCATGCGACGGGGGGGTCAGCGCGGCGGGATGACAG
CGCAACGAGCTCGGCGGGCAACAACGGAGGAGGCTTTAACGAGGTCAATT
CTTATATTGAGGTATGTGCGTCGGTGTATGTGAGAGTACAGAGTAGTCGA
AAGGGTGTCGATCAACTCGCATCCCGCTTTCTCATCGATACGCTCCCACC
CTTCCCTCCCTCCCTCCCTCGCTTCTCTCACCAATCAGTCGCAGCAACGA
CGCATTCAAGAGCTAGAGCGGATTAACATCGATCTCGAGCGCCGCCTAGA
GCAACAAGCTCGCGAGAGGATGAAGCTTGAGAGGGAGTCCGTGGAGAACA
AGCGGGCATGGGAGGCACAGCACACCAACATTGGCCACGTATGTATTTTG
CGTCTGGGGCGACAAGAGGAAAAATAGAGGAGCTCTGAGCGGGCGTAGTA
GCTGATAAGCTGCTCATTATCCTCATTTCTTTCTCTCCCTTCTATACATA
TGTACACATAAATGTATGTATTTATTACCTCTGTCCTGCTGTTAACCTTC
GTTTTCTATCTCTGTTTCCCTCCCTTTCCCTACCATCAACTACCACAGGA
ACGTGATGAATGGAGAGGCCGCTATGAGAAGGAACTCCTGCACATGCAAA
AACTCCGCGAGAACAACCGACGCCTAGAGCGAGAGCTGCATGGTTTCCTT
CAAAAGAAGTATGATTTTATGCAGATGCAGTCGAGGTCGGCCTCGGGGAG
CACTGGAGGTGGTAGTGGTGGTGGTGGAGGAGGAGGAGTAGGGGGGGGAG
GGGGAACGAAAGGTGGGCAGCCACTTTTAAACGGACGGGAAGGTGACTCA
CATGGCGGAACGCGGAGCATGCGCGCGGCGACGATGGGAAGCAGCGGTGG
GCGAGGAGGAGAGCGAGGAGAGGGAGGGGGAGGCGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGAGAGAGTTGGCATAGGGGCTGGGGAAGCCGTGCCG
CTTAACCCAAAAGACCTCACCCCTGAGACAATGAGGGAGAAGCGCGTTAT
CCAGACGATGTGCGACTTTTTTGGCTTTTGAAAAGTGTGGGTTTGGTTGC
GAGCAGTCCATTTGTCTTGCACAGCATGCAAATGCCACGAACTCTCTCCT
TAAGAATGACCGTGTACATATACAATCTTCCCTTTTCATCACTTGTCATC
ACAAAGAAATGAAACACGAATACGTA
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Coding sequence (CDS) from alignment at chr10:777461..779086-

>NO10G02830.1 ID=NO10G02830.1|Name=NO10G02830.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr10:777461..779086- (Nannochloropsis oceanica)
ATGAACCCTGTTGGTTTTCGTGGGTCCGGACCGCTCTTTGATCGTGTTCA
TGCGACGGGGGGGTCAGCGCGGCGGGATGACAGCGCAACGAGCTCGGCGG
GCAACAACGGAGGAGGCTTTAACGAGGTCAATTCTTATATTGAGTCGCAG
CAACGACGCATTCAAGAGCTAGAGCGGATTAACATCGATCTCGAGCGCCG
CCTAGAGCAACAAGCTCGCGAGAGGATGAAGCTTGAGAGGGAGTCCGTGG
AGAACAAGCGGGCATGGGAGGCACAGCACACCAACATTGGCCACGAACGT
GATGAATGGAGAGGCCGCTATGAGAAGGAACTCCTGCACATGCAAAAACT
CCGCGAGAACAACCGACGCCTAGAGCGAGAGCTGCATGGTTTCCTTCAAA
AGAAGTATGATTTTATGCAGATGCAGTCGAGGTCGGCCTCGGGGAGCACT
GGAGGTGGTAGTGGTGGTGGTGGAGGAGGAGGAGTAGGGGGGGGAGGGGG
AACGAAAGGTGGGCAGCCACTTTTAAACGGACGGGAAGGTGACTCACATG
GCGGAACGCGGAGCATGCGCGCGGCGACGATGGGAAGCAGCGGTGGGCGA
GGAGGAGAGCGAGGAGAGGGAGGGGGAGGCGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGAGAGAGTTGGCATAGGGGCTGGGGAAGCCGTGCCGCTTA
ACCCAAAAGACCTCACCCCTGAGACAATGAGGGAGAAGCGCGTTATCCAG
ACGATGTGCGACTTTTTTGGCTTTTGA
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Synonyms
Publications