NO10G02480.1, NO10G02480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02480.1
Unique NameNO10G02480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length753
Alignment locationchr10:669039..669791 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:669039..669791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO10G02480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02480NO10G02480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02480.1NO10G02480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02480.1.cds1NO10G02480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02480.1 ID=NO10G02480.1|Name=NO10G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=753bp
ATGGAGGCAGGGGGGTCAAAAGAAGATATGGCGACGGAAGAAAAGGAGAA
ATTAATCAAGGAGAACAAGACCGAAAAGACGACGAAGAAGAAGAAGTCGC
TTGTGGTGGTAGCTGATGAGGAGATGCAGGTGAAGGAGGGCAACGGTGGT
GCTGGTATCAGAGCAGACTTTATCGTCATGGCGGCGGCCGAGGCTAAAGC
ACAGAGGGAGGGATCAGAGGTCACGACCTGTGACAGGAAAGGGCGGGGGG
AGAAGGCGGTCGCGACGAAAGAGAGGCGGAGGAATCAGAACAACAAGAAC
AGAAGGGAAAAGAAGAAGGCGGCGGCGGAAGCGGAAGCATCAGCGGTGGG
GATGGAGAGAATTTTCTCAGAGATCCAGGTTGATGCCGCTGTAATACCGT
CGACTATGGCCGCTGTAATACCGTCGACTATGGAGATGAAAGTAGAAGAA
ATAATGATGGTGAAGGAGGCTGTCGTGTCGCCCGCTCTCATTGGGGAGAA
AGAGGAGATAGATAAGGAGGACATTGTGGTGTCAGTGTCCGTCAAACCGG
CAGCAGTGGCGCCAGAAGAGAGGGGGGAGGAGGACGAGGAAGTCGTGACT
GCGGAAGGGGGGGACAAAGATGGAGCAGAGAGGGCGTTGAACAGTGTCCC
AAACGAGTCCATTTCTACGCCACTAAAGAAACAGCGCAAGAGGAAGAAAA
ATAAAAACGGCGGGGCGGCAGCAGCGACCAAGACAACTAATGGCACATGT
TAG
back to top

protein sequence of NO10G02480.1

>NO10G02480.1-protein ID=NO10G02480.1-protein|Name=NO10G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MEAGGSKEDMATEEKEKLIKENKTEKTTKKKKSLVVVADEEMQVKEGNGG
AGIRADFIVMAAAEAKAQREGSEVTTCDRKGRGEKAVATKERRRNQNNKN
RREKKKAAAEAEASAVGMERIFSEIQVDAAVIPSTMAAVIPSTMEMKVEE
IMMVKEAVVSPALIGEKEEIDKEDIVVSVSVKPAAVAPEERGEEDEEVVT
AEGGDKDGAERALNSVPNESISTPLKKQRKRKKNKNGGAAAATKTTNGTC
*
back to top

mRNA from alignment at chr10:669039..669791+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02480.1 ID=NO10G02480.1|Name=NO10G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=753bp|location=Sequence derived from alignment at chr10:669039..669791+ (Nannochloropsis oceanica)
ATGGAGGCAGGGGGGTCAAAAGAAGATATGGCGACGGAAGAAAAGGAGAA
ATTAATCAAGGAGAACAAGACCGAAAAGACGACGAAGAAGAAGAAGTCGC
TTGTGGTGGTAGCTGATGAGGAGATGCAGGTGAAGGAGGGCAACGGTGGT
GCTGGTATCAGAGCAGACTTTATCGTCATGGCGGCGGCCGAGGCTAAAGC
ACAGAGGGAGGGATCAGAGGTCACGACCTGTGACAGGAAAGGGCGGGGGG
AGAAGGCGGTCGCGACGAAAGAGAGGCGGAGGAATCAGAACAACAAGAAC
AGAAGGGAAAAGAAGAAGGCGGCGGCGGAAGCGGAAGCATCAGCGGTGGG
GATGGAGAGAATTTTCTCAGAGATCCAGGTTGATGCCGCTGTAATACCGT
CGACTATGGCCGCTGTAATACCGTCGACTATGGAGATGAAAGTAGAAGAA
ATAATGATGGTGAAGGAGGCTGTCGTGTCGCCCGCTCTCATTGGGGAGAA
AGAGGAGATAGATAAGGAGGACATTGTGGTGTCAGTGTCCGTCAAACCGG
CAGCAGTGGCGCCAGAAGAGAGGGGGGAGGAGGACGAGGAAGTCGTGACT
GCGGAAGGGGGGGACAAAGATGGAGCAGAGAGGGCGTTGAACAGTGTCCC
AAACGAGTCCATTTCTACGCCACTAAAGAAACAGCGCAAGAGGAAGAAAA
ATAAAAACGGCGGGGCGGCAGCAGCGACCAAGACAACTAATGGCACATGT
TAG
back to top

Coding sequence (CDS) from alignment at chr10:669039..669791+

>NO10G02480.1 ID=NO10G02480.1|Name=NO10G02480.1|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at chr10:669039..669791+ (Nannochloropsis oceanica)
ATGGAGGCAGGGGGGTCAAAAGAAGATATGGCGACGGAAGAAAAGGAGAA
ATTAATCAAGGAGAACAAGACCGAAAAGACGACGAAGAAGAAGAAGTCGC
TTGTGGTGGTAGCTGATGAGGAGATGCAGGTGAAGGAGGGCAACGGTGGT
GCTGGTATCAGAGCAGACTTTATCGTCATGGCGGCGGCCGAGGCTAAAGC
ACAGAGGGAGGGATCAGAGGTCACGACCTGTGACAGGAAAGGGCGGGGGG
AGAAGGCGGTCGCGACGAAAGAGAGGCGGAGGAATCAGAACAACAAGAAC
AGAAGGGAAAAGAAGAAGGCGGCGGCGGAAGCGGAAGCATCAGCGGTGGG
GATGGAGAGAATTTTCTCAGAGATCCAGGTTGATGCCGCTGTAATACCGT
CGACTATGGCCGCTGTAATACCGTCGACTATGGAGATGAAAGTAGAAGAA
ATAATGATGGTGAAGGAGGCTGTCGTGTCGCCCGCTCTCATTGGGGAGAA
AGAGGAGATAGATAAGGAGGACATTGTGGTGTCAGTGTCCGTCAAACCGG
CAGCAGTGGCGCCAGAAGAGAGGGGGGAGGAGGACGAGGAAGTCGTGACT
GCGGAAGGGGGGGACAAAGATGGAGCAGAGAGGGCGTTGAACAGTGTCCC
AAACGAGTCCATTTCTACGCCACTAAAGAAACAGCGCAAGAGGAAGAAAA
ATAAAAACGGCGGGGCGGCAGCAGCGACCAAGACAACTAATGGCACATGT
TAG
back to top
Synonyms
Publications