NO10G02470.1, NO10G02470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02470.1
Unique NameNO10G02470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length804
Alignment locationchr10:667728..668531 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:667728..668531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02470.1 vs.
Match: XP_003002538.1 (ankyrin repeat and protein kinase domain-containing protein [Verticillium alfalfae VaMs.102]; EEY20999.1 ankyrin repeat and protein kinase domain-containing protein [Verticillium alfalfae VaMs.102])

HSP 1 Score: 70.5 bits (171), Expect = 9.100e-9
Identity = 53/134 (39.55%), Postives = 67/134 (50.00%), Query Frame = 0 
Query:  135 LIMLEARLEKESISVREEALKTASVHGRMPLHLAAMAGSVRVVELLLSYGADANAFSQNETPLHL----SSNERVAKTLLVGGADPSIPHKQTKEVALHVAIRRRDICSVQTLLERPRHRRSINERDVDWTTLL 265
            L + E+R E     +   AL  A   GRMPLH AA  G+V VV LLL YGAD  A S +E         S N  VA+ LL  GADP     +    ALH+A    D+  ++ LLER   R  ++ RD +  T L
Sbjct:   90 LAIEESRTEVVRFLLAHHALTDADAGGRMPLHEAASRGNVHVVRLLLDYGADIQALSTDERDALFFAVRSQNVAVARLLLDRGADPDAYLSEDPPTALHLASELCDVEMMRMLLER---RAKVDLRDFNGATPL 220
The following BLAST results are available for this feature:
BLAST of NO10G02470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_003002538.19.100e-939.55ankyrin repeat and protein kinase domain-containin... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02470NO10G02470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02470.1NO10G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02470.1.cds1NO10G02470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02470.1 ID=NO10G02470.1|Name=NO10G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=804bp
ATGGAGGAAACAACGAGAGGAAGGAAACTTGAGGGCGCCTATGCCCTCCG
AAGCAACCCGGGCGGCTTTACCGTTGAGAGAAATGCTGGCGCAAAAAACA
ATGCGATCGCGCATATTTCCTATGGTTTAAACGGTCTTGGGGAAGGCCAA
ACCCTGGGAAAGGAGGAAGCTGAAGCGAGCGGGTATGCGCCAGAAGCGGT
GACGGCCGCAGCATCGACGCTAGCTGCAACCAAGCTTTCCCTCCCTTCCT
TCTCTTTGGCCTCCTTCACTCCTCCACCGAGACCTGCATCCGCCCTCCGA
TCCCCCCTCGCCCCAACCTCATCCTCTCTCCCCGACAATACCTCCTTGGA
CCTCTCCCTCTTCCTCCTAGACCACGCCAGCGTCACAGAATCCGATGAGC
TCCTGATTATGCTCGAGGCACGCTTAGAGAAGGAGTCTATATCAGTACGA
GAAGAGGCCCTCAAAACCGCATCTGTCCACGGCCGCATGCCTTTACACCT
GGCAGCAATGGCAGGGTCGGTTCGCGTGGTAGAGTTGCTGCTCTCTTACG
GCGCAGATGCCAACGCATTCAGTCAAAATGAGACTCCCCTCCATCTGAGC
AGCAATGAAAGGGTTGCGAAAACCCTACTGGTGGGAGGAGCCGACCCTTC
CATCCCCCACAAGCAAACAAAAGAAGTAGCGCTGCATGTAGCCATCCGAC
GTCGTGACATTTGCTCAGTCCAAACTCTGTTAGAGCGCCCTCGTCACCGG
CGGAGCATCAACGAACGCGACGTGGATTGGACCACCCTTCTCCATCTCGC
CTGA
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protein sequence of NO10G02470.1

>NO10G02470.1-protein ID=NO10G02470.1-protein|Name=NO10G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MEETTRGRKLEGAYALRSNPGGFTVERNAGAKNNAIAHISYGLNGLGEGQ
TLGKEEAEASGYAPEAVTAAASTLAATKLSLPSFSLASFTPPPRPASALR
SPLAPTSSSLPDNTSLDLSLFLLDHASVTESDELLIMLEARLEKESISVR
EEALKTASVHGRMPLHLAAMAGSVRVVELLLSYGADANAFSQNETPLHLS
SNERVAKTLLVGGADPSIPHKQTKEVALHVAIRRRDICSVQTLLERPRHR
RSINERDVDWTTLLHLA*
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mRNA from alignment at chr10:667728..668531+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02470.1 ID=NO10G02470.1|Name=NO10G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=804bp|location=Sequence derived from alignment at chr10:667728..668531+ (Nannochloropsis oceanica)
ATGGAGGAAACAACGAGAGGAAGGAAACTTGAGGGCGCCTATGCCCTCCG
AAGCAACCCGGGCGGCTTTACCGTTGAGAGAAATGCTGGCGCAAAAAACA
ATGCGATCGCGCATATTTCCTATGGTTTAAACGGTCTTGGGGAAGGCCAA
ACCCTGGGAAAGGAGGAAGCTGAAGCGAGCGGGTATGCGCCAGAAGCGGT
GACGGCCGCAGCATCGACGCTAGCTGCAACCAAGCTTTCCCTCCCTTCCT
TCTCTTTGGCCTCCTTCACTCCTCCACCGAGACCTGCATCCGCCCTCCGA
TCCCCCCTCGCCCCAACCTCATCCTCTCTCCCCGACAATACCTCCTTGGA
CCTCTCCCTCTTCCTCCTAGACCACGCCAGCGTCACAGAATCCGATGAGC
TCCTGATTATGCTCGAGGCACGCTTAGAGAAGGAGTCTATATCAGTACGA
GAAGAGGCCCTCAAAACCGCATCTGTCCACGGCCGCATGCCTTTACACCT
GGCAGCAATGGCAGGGTCGGTTCGCGTGGTAGAGTTGCTGCTCTCTTACG
GCGCAGATGCCAACGCATTCAGTCAAAATGAGACTCCCCTCCATCTGAGC
AGCAATGAAAGGGTTGCGAAAACCCTACTGGTGGGAGGAGCCGACCCTTC
CATCCCCCACAAGCAAACAAAAGAAGTAGCGCTGCATGTAGCCATCCGAC
GTCGTGACATTTGCTCAGTCCAAACTCTGTTAGAGCGCCCTCGTCACCGG
CGGAGCATCAACGAACGCGACGTGGATTGGACCACCCTTCTCCATCTCGC
CTGA
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Coding sequence (CDS) from alignment at chr10:667728..668531+

>NO10G02470.1 ID=NO10G02470.1|Name=NO10G02470.1|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at chr10:667728..668531+ (Nannochloropsis oceanica)
ATGGAGGAAACAACGAGAGGAAGGAAACTTGAGGGCGCCTATGCCCTCCG
AAGCAACCCGGGCGGCTTTACCGTTGAGAGAAATGCTGGCGCAAAAAACA
ATGCGATCGCGCATATTTCCTATGGTTTAAACGGTCTTGGGGAAGGCCAA
ACCCTGGGAAAGGAGGAAGCTGAAGCGAGCGGGTATGCGCCAGAAGCGGT
GACGGCCGCAGCATCGACGCTAGCTGCAACCAAGCTTTCCCTCCCTTCCT
TCTCTTTGGCCTCCTTCACTCCTCCACCGAGACCTGCATCCGCCCTCCGA
TCCCCCCTCGCCCCAACCTCATCCTCTCTCCCCGACAATACCTCCTTGGA
CCTCTCCCTCTTCCTCCTAGACCACGCCAGCGTCACAGAATCCGATGAGC
TCCTGATTATGCTCGAGGCACGCTTAGAGAAGGAGTCTATATCAGTACGA
GAAGAGGCCCTCAAAACCGCATCTGTCCACGGCCGCATGCCTTTACACCT
GGCAGCAATGGCAGGGTCGGTTCGCGTGGTAGAGTTGCTGCTCTCTTACG
GCGCAGATGCCAACGCATTCAGTCAAAATGAGACTCCCCTCCATCTGAGC
AGCAATGAAAGGGTTGCGAAAACCCTACTGGTGGGAGGAGCCGACCCTTC
CATCCCCCACAAGCAAACAAAAGAAGTAGCGCTGCATGTAGCCATCCGAC
GTCGTGACATTTGCTCAGTCCAAACTCTGTTAGAGCGCCCTCGTCACCGG
CGGAGCATCAACGAACGCGACGTGGATTGGACCACCCTTCTCCATCTCGC
CTGA
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Synonyms
Publications