NO10G02410.1, NO10G02410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02410.1
Unique NameNO10G02410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2402
Alignment locationchr10:657603..660004 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:657603..660004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02410.1 vs.
Match: EWM25457.1 (phosphatase ptc7 family protein [Nannochloropsis gaditana])

HSP 1 Score: 939.9 bits (2428), Expect = 4.100e-270
Identity = 490/657 (74.58%), Postives = 547/657 (83.26%), Query Frame = 0 
Query:    1 MNRTGPATTLIRTAAAAGARR-----WGACTATHSFRSSSSSSSSATVSIISRRRPRAM------------------------RPPPQQQHQACPAFSSRTSELEQQDLHPDDDMRGVTSNSCGSGSDSEDDSSALFKTRSRSKKSDRPNHNSKITAAQIVKQRQRKVCQIYSGATLEEAIKLLASNNSSNSMVYEEKGPGGHKEVVGVFTARDVIKKLNKHADKLEALQSTVRQVMTPMSRVIFCSPDDTVEKIQYIMVELKIRTLPVVKDGVIHGIITLGDVINHYYSSEEIGGKKAFIKGVVGRLGLPTGTRVASHVVKEGVKRSIKWKVGMAALPHPFKRPDGVAPNLRMHGPIEYATDLELSEDASFILTLPWLHEHGDEATYVGIADGVGSWREHGVDPREYSHRLMKLSEEFIRSMAPKAPNLMAPIVRPLDVLSSAWEEITKEEVVGSSTACIATLDMELNQLSFCNVGDNGIIIMRHIDSDVAGYMRDKTTPRPLRTNDFRIAFVSRQQLRSFNLPYQLGHTNTQSEHCFDTPCDADNSSIPVMRGDVIIMGTDGLFDNVELDEICSIALAWEQKWFANGAYSSGLRAADFPEESVQELAMTLCKRARELSLDQKRDSPFAILAKENDIMWGGGMPDDCTIVAMRVVK 629
            M RT  A+ ++R A A G +R     +  C +   F  S ++ + A V+  SRRRPR                          R   Q  + A  AFSS+TS++E+ D   DDD +G         +DS+D+ S         K+SDRPNHNSKITAA IVKQRQRKVCQI SGATLEEAIK+LASNN++ SMVY E+ PGG KEVVG+FTA+DVIK L+K ADK EALQS V+  MTPMSRVI+CSPDDT+EK+QYIMVEL+IRTLPVVKDGVI+GIITLGDVINH+YSSEEIGGKKAFIKGV GRLGLP+GT+VASHVVKEGVK+SIKWKVG+AALPHPFKR DGVA +LR+HGP +YATDL+LSEDASF+L LPW HEHGDEATYVGIADGVGSWREHGVDPREYSHRLM+L E+FIRSMAPKAPNL+ P+VRPLDVLSSAWE ITKE+VVGSSTACIATLDMELNQLSFCNVGD+GIIIMRHIDSDVAGYMRDKTTPRPLRTNDFRIAFVSRQQLRSFNLPYQ+G+TNTQ E+CFDTP DADNSSIP+MRGDVIIMGTDGLFDNVELDEICSIALAWEQKWF +GA+SSGLRA+DFPEESVQELAMTLC+RARELSLDQKRDSPFAILAKENDIMWGGGMPDDCTI AMRVVK
Sbjct:    1 MKRTS-ASYILRKAGATGTQRPRVHHYPFCPSERVFNGSVATRAGAIVT--SRRRPRIALGGGEMRSSLCFFVARPSGGRDYPRLTSQLPYHASRAFSSQTSQIEKHDAPGDDDKQGAGPVR----NDSDDEHSTYSTAGYEGKRSDRPNHNSKITAAHIVKQRQRKVCQISSGATLEEAIKILASNNANTSMVYNERTPGGAKEVVGIFTAQDVIKTLSKQADKAEALQSLVKNAMTPMSRVIYCSPDDTLEKVQYIMVELQIRTLPVVKDGVIYGIITLGDVINHHYSSEEIGGKKAFIKGVAGRLGLPSGTQVASHVVKEGVKKSIKWKVGVAALPHPFKRRDGVAASLRLHGPKDYATDLDLSEDASFVLNLPWPHEHGDEATYVGIADGVGSWREHGVDPREYSHRLMQLCEQFIRSMAPKAPNLVTPMVRPLDVLSSAWETITKEKVVGSSTACIATLDMELNQLSFCNVGDSGIIIMRHIDSDVAGYMRDKTTPRPLRTNDFRIAFVSRQQLRSFNLPYQMGYTNTQPENCFDTPSDADNSSIPIMRGDVIIMGTDGLFDNVELDEICSIALAWEQKWFGSGAHSSGLRASDFPEESVQELAMTLCRRARELSLDQKRDSPFAILAKENDIMWGGGMPDDCTIFAMRVVK 650
The following BLAST results are available for this feature:
BLAST of NO10G02410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25457.14.100e-27074.58phosphatase ptc7 family protein [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02410NO10G02410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02410.1NO10G02410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02410.1.cds1NO10G02410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02410.1 ID=NO10G02410.1|Name=NO10G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2402bp
ACACACAGGCGCCACGGGTGTCGAGCGGCAGCCTTGGTACCAAGAAAGCA
ATGAACCGTACCGGTCCGGCCACGACCTTGATACGGACGGCGGCTGCAGC
AGGGGCACGTCGATGGGGGGCCTGTACAGCCACCCATAGCTTTCGCAGCA
GCAGCAGCAGCAGCAGCAGCGCAACCGTCAGTATAATCAGTCGACGGCGA
CCTAGAGCCATGCGGCCGCCGCCGCAGCAACAGCACCAAGCCTGCCCTGC
ATTTAGCTCCCGGACATCTGAGCTGGAGCAGCAGGACCTGCACCCAGATG
ACGACATGAGGGGAGTTACCAGCAATAGCTGTGGAAGTGGAAGCGACAGT
GAGGATGACAGCTCGGCCCTATTCAAAACACGGTCGCGGAGCAAGAAATC
GGACCGTCCAAACCACAACAGCAAGATTACTGCGGCGCAAATTGTGAAGC
AACGGCAGCGCAAAGTGTGTCAAATTTACAGCGGGGCGACGTTGGAGGAA
GCGATCAAGCTTTTAGCATCCAATAATTCCAGCAACTCTATGGTGTACGA
AGAGAAAGGTCCGGGCGGGCACAAAGAGGTCGTTGGTGTTTTCACTGCGC
GGGACGTGATTAAGAAATTGAACAAGCATGCAGATAAGCTTGAGGCTCTG
CAGTCGACCGTCAGGCAAGTTATGACACCCATGTCGCGCGTCATCTTCTG
CTCTCCCGACGACACCGTTGAGAAAATTCAATATATTATGGTGGAGTTAA
AGATACGAACGTTGCCTGTGGTAAAGGATGGCGTGATTCACGGCATTATC
ACTTTGGGGGATGTGATCAATCACTATTATTCGTCAGAGGAGATAGGGGG
TAAGAAAGCTTTCATCAAGGGAGTGGTGGGGAGGTTGGGTCTGCCGACAG
GCACAAGGGTCGCCTCGCATGTCGTTAAGGAGGGGGTGAAGAGAAGTATC
AAGTGGAAGGTGGGCATGGCAGCGTTGCCTCACCCGTTCAAGAGGCCGGA
TGGTGTGGCGCCGAATTTGAGGATGCATGGTCCGATTGAATATGCAACGG
ACTTGGAGCTGTCGGAGGATGCGTCATTTATTCTTACTTTGCCTTGGTTG
CATGAGCATGGGGACGAGGCGACGTATGTGGGAATTGCGGATGGGGTGGG
GTCTTGGAGGGAACACGGGGTGGATCCGAGGGAGTACTCGCACCGGTTGA
TGAAATTGTCGGAGGAGTTTATCCGAAGTATGGCGCCCAAGGCACCGAAT
CTGATGGCGCCCATAGTGAGGCCATTGGATGTCCTGTCGAGTGCCTGGGA
GGAGATCACGAAGGAGGAGGTGGTGGGAAGCAGTACGGCGTGTATTGCCA
CTCTGGACATGGAGCTGAATCAATTAAGCTTCTGTAATGTGGGCGATAAT
GGGATCATTATTATGAGACATATCGACTCAGACGTTGCGGGCTATATGCG
TGATAAAACCACGCCGAGACCTCTCAGGACGAATGATTTTAGGATTGCCT
TTGTCTCGCGCCAACAATTGCGGAGTTTTAATTTGCCGTATCAACTGGGT
CACACCAATACACAGTCGGAACATTGCTTTGACACTCCCTGCGATGCGGA
TAATTCTTCGATTCCCGTCATGCGTGGAGATGTGATCATCATGGGCACGG
ATGGTTTGTTTGACAACGTCGAGCTGGATGAAATCTGTTCAATTGCCTTG
GCGTGGGAACAGAAATGGTTCGCAAACGGCGCATATTCTTCGGGACTACG
TGCAGCGGATTTCCCCGAGGAAAGCGTGCAGGAGCTGGCGATGACGTTGT
GTAAACGAGCGAGGGAGTTGAGTTTGGACCAGAAGAGGGATAGTCCCTTT
GCAATTCTGGCGAAAGAGAATGACATTATGTGGGGGGGGGGGATGCCAGA
CGACTGTACAATTGTGGCGATGCGGGTGGTGAAGGTGTAAAAGGCCCATC
CCTCTCTCCCTCTCTCTCCCTCGCTTTTTTCCTTCCTGACCTGTTCTGCT
TGTTGGACGATTGTATCATTGTGGCCACGGGCGTGGCAAGGAGAGAGGAA
GGGAAGGAGGGAAGGAGGGAATGTGGTTGTGGGGATGTAGGTAGGTTTCG
TTTCTCTCATATTCAATTTGCTTTGGAGGCATTGAAGGCGGCATCTAGCG
GTCACAGCTTTTCTTATCTTGCTTCCATTGGGGAAAGAAAAGTGGACAAA
ATTAGGTGAGAAAGATCGCACTCATTATATGAAAAAAATAAAGATTTTTT
TAAAGAGTAGAGAAGTGTGAATGTGTTTGTTTTAAAATGTGAAGAGGCAC
ACGATCCAGCAACTTCCTCGCAACATTTCGCTTATATGCGACGAGTGGAT
AGGAAGAGACGGAAGGGTGTAAACCAAAGAATCAACAACAGACTGTATGC
TT
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protein sequence of NO10G02410.1

>NO10G02410.1-protein ID=NO10G02410.1-protein|Name=NO10G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=630bp
MNRTGPATTLIRTAAAAGARRWGACTATHSFRSSSSSSSSATVSIISRRR
PRAMRPPPQQQHQACPAFSSRTSELEQQDLHPDDDMRGVTSNSCGSGSDS
EDDSSALFKTRSRSKKSDRPNHNSKITAAQIVKQRQRKVCQIYSGATLEE
AIKLLASNNSSNSMVYEEKGPGGHKEVVGVFTARDVIKKLNKHADKLEAL
QSTVRQVMTPMSRVIFCSPDDTVEKIQYIMVELKIRTLPVVKDGVIHGII
TLGDVINHYYSSEEIGGKKAFIKGVVGRLGLPTGTRVASHVVKEGVKRSI
KWKVGMAALPHPFKRPDGVAPNLRMHGPIEYATDLELSEDASFILTLPWL
HEHGDEATYVGIADGVGSWREHGVDPREYSHRLMKLSEEFIRSMAPKAPN
LMAPIVRPLDVLSSAWEEITKEEVVGSSTACIATLDMELNQLSFCNVGDN
GIIIMRHIDSDVAGYMRDKTTPRPLRTNDFRIAFVSRQQLRSFNLPYQLG
HTNTQSEHCFDTPCDADNSSIPVMRGDVIIMGTDGLFDNVELDEICSIAL
AWEQKWFANGAYSSGLRAADFPEESVQELAMTLCKRARELSLDQKRDSPF
AILAKENDIMWGGGMPDDCTIVAMRVVKV*
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mRNA from alignment at chr10:657603..660004+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02410.1 ID=NO10G02410.1|Name=NO10G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2402bp|location=Sequence derived from alignment at chr10:657603..660004+ (Nannochloropsis oceanica)
ACACACAGGCGCCACGGGTGTCGAGCGGCAGCCTTGGTACCAAGAAAGCA
ATGAACCGTACCGGTCCGGCCACGACCTTGATACGGACGGCGGCTGCAGC
AGGGGCACGTCGATGGGGGGCCTGTACAGCCACCCATAGCTTTCGCAGCA
GCAGCAGCAGCAGCAGCAGCGCAACCGTCAGTATAATCAGTCGACGGCGA
CCTAGAGCCATGCGGCCGCCGCCGCAGCAACAGCACCAAGCCTGCCCTGC
ATTTAGCTCCCGGACATCTGAGCTGGAGCAGCAGGACCTGCACCCAGATG
ACGACATGAGGGGAGTTACCAGCAATAGCTGTGGAAGTGGAAGCGACAGT
GAGGATGACAGCTCGGCCCTATTCAAAACACGGTCGCGGAGCAAGAAATC
GGACCGTCCAAACCACAACAGCAAGATTACTGCGGCGCAAATTGTGAAGC
AACGGCAGCGCAAAGTGTGTCAAATTTACAGCGGGGCGACGTTGGAGGAA
GCGATCAAGCTTTTAGCATCCAATAATTCCAGCAACTCTATGGTGTACGA
AGAGAAAGGTCCGGGCGGGCACAAAGAGGTCGTTGGTGTTTTCACTGCGC
GGGACGTGATTAAGAAATTGAACAAGCATGCAGATAAGCTTGAGGCTCTG
CAGTCGACCGTCAGGCAAGTTATGACACCCATGTCGCGCGTCATCTTCTG
CTCTCCCGACGACACCGTTGAGAAAATTCAATATATTATGGTGGAGTTAA
AGATACGAACGTTGCCTGTGGTAAAGGATGGCGTGATTCACGGCATTATC
ACTTTGGGGGATGTGATCAATCACTATTATTCGTCAGAGGAGATAGGGGG
TAAGAAAGCTTTCATCAAGGGAGTGGTGGGGAGGTTGGGTCTGCCGACAG
GCACAAGGGTCGCCTCGCATGTCGTTAAGGAGGGGGTGAAGAGAAGTATC
AAGTGGAAGGTGGGCATGGCAGCGTTGCCTCACCCGTTCAAGAGGCCGGA
TGGTGTGGCGCCGAATTTGAGGATGCATGGTCCGATTGAATATGCAACGG
ACTTGGAGCTGTCGGAGGATGCGTCATTTATTCTTACTTTGCCTTGGTTG
CATGAGCATGGGGACGAGGCGACGTATGTGGGAATTGCGGATGGGGTGGG
GTCTTGGAGGGAACACGGGGTGGATCCGAGGGAGTACTCGCACCGGTTGA
TGAAATTGTCGGAGGAGTTTATCCGAAGTATGGCGCCCAAGGCACCGAAT
CTGATGGCGCCCATAGTGAGGCCATTGGATGTCCTGTCGAGTGCCTGGGA
GGAGATCACGAAGGAGGAGGTGGTGGGAAGCAGTACGGCGTGTATTGCCA
CTCTGGACATGGAGCTGAATCAATTAAGCTTCTGTAATGTGGGCGATAAT
GGGATCATTATTATGAGACATATCGACTCAGACGTTGCGGGCTATATGCG
TGATAAAACCACGCCGAGACCTCTCAGGACGAATGATTTTAGGATTGCCT
TTGTCTCGCGCCAACAATTGCGGAGTTTTAATTTGCCGTATCAACTGGGT
CACACCAATACACAGTCGGAACATTGCTTTGACACTCCCTGCGATGCGGA
TAATTCTTCGATTCCCGTCATGCGTGGAGATGTGATCATCATGGGCACGG
ATGGTTTGTTTGACAACGTCGAGCTGGATGAAATCTGTTCAATTGCCTTG
GCGTGGGAACAGAAATGGTTCGCAAACGGCGCATATTCTTCGGGACTACG
TGCAGCGGATTTCCCCGAGGAAAGCGTGCAGGAGCTGGCGATGACGTTGT
GTAAACGAGCGAGGGAGTTGAGTTTGGACCAGAAGAGGGATAGTCCCTTT
GCAATTCTGGCGAAAGAGAATGACATTATGTGGGGGGGGGGGATGCCAGA
CGACTGTACAATTGTGGCGATGCGGGTGGTGAAGGTGTAAAAGGCCCATC
CCTCTCTCCCTCTCTCTCCCTCGCTTTTTTCCTTCCTGACCTGTTCTGCT
TGTTGGACGATTGTATCATTGTGGCCACGGGCGTGGCAAGGAGAGAGGAA
GGGAAGGAGGGAAGGAGGGAATGTGGTTGTGGGGATGTAGGTAGGTTTCG
TTTCTCTCATATTCAATTTGCTTTGGAGGCATTGAAGGCGGCATCTAGCG
GTCACAGCTTTTCTTATCTTGCTTCCATTGGGGAAAGAAAAGTGGACAAA
ATTAGGTGAGAAAGATCGCACTCATTATATGAAAAAAATAAAGATTTTTT
TAAAGAGTAGAGAAGTGTGAATGTGTTTGTTTTAAAATGTGAAGAGGCAC
ACGATCCAGCAACTTCCTCGCAACATTTCGCTTATATGCGACGAGTGGAT
AGGAAGAGACGGAAGGGTGTAAACCAAAGAATCAACAACAGACTGTATGC
TT
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Coding sequence (CDS) from alignment at chr10:657603..660004+

>NO10G02410.1 ID=NO10G02410.1|Name=NO10G02410.1|organism=Nannochloropsis oceanica|type=CDS|length=1890bp|location=Sequence derived from alignment at chr10:657603..660004+ (Nannochloropsis oceanica)
ATGAACCGTACCGGTCCGGCCACGACCTTGATACGGACGGCGGCTGCAGC
AGGGGCACGTCGATGGGGGGCCTGTACAGCCACCCATAGCTTTCGCAGCA
GCAGCAGCAGCAGCAGCAGCGCAACCGTCAGTATAATCAGTCGACGGCGA
CCTAGAGCCATGCGGCCGCCGCCGCAGCAACAGCACCAAGCCTGCCCTGC
ATTTAGCTCCCGGACATCTGAGCTGGAGCAGCAGGACCTGCACCCAGATG
ACGACATGAGGGGAGTTACCAGCAATAGCTGTGGAAGTGGAAGCGACAGT
GAGGATGACAGCTCGGCCCTATTCAAAACACGGTCGCGGAGCAAGAAATC
GGACCGTCCAAACCACAACAGCAAGATTACTGCGGCGCAAATTGTGAAGC
AACGGCAGCGCAAAGTGTGTCAAATTTACAGCGGGGCGACGTTGGAGGAA
GCGATCAAGCTTTTAGCATCCAATAATTCCAGCAACTCTATGGTGTACGA
AGAGAAAGGTCCGGGCGGGCACAAAGAGGTCGTTGGTGTTTTCACTGCGC
GGGACGTGATTAAGAAATTGAACAAGCATGCAGATAAGCTTGAGGCTCTG
CAGTCGACCGTCAGGCAAGTTATGACACCCATGTCGCGCGTCATCTTCTG
CTCTCCCGACGACACCGTTGAGAAAATTCAATATATTATGGTGGAGTTAA
AGATACGAACGTTGCCTGTGGTAAAGGATGGCGTGATTCACGGCATTATC
ACTTTGGGGGATGTGATCAATCACTATTATTCGTCAGAGGAGATAGGGGG
TAAGAAAGCTTTCATCAAGGGAGTGGTGGGGAGGTTGGGTCTGCCGACAG
GCACAAGGGTCGCCTCGCATGTCGTTAAGGAGGGGGTGAAGAGAAGTATC
AAGTGGAAGGTGGGCATGGCAGCGTTGCCTCACCCGTTCAAGAGGCCGGA
TGGTGTGGCGCCGAATTTGAGGATGCATGGTCCGATTGAATATGCAACGG
ACTTGGAGCTGTCGGAGGATGCGTCATTTATTCTTACTTTGCCTTGGTTG
CATGAGCATGGGGACGAGGCGACGTATGTGGGAATTGCGGATGGGGTGGG
GTCTTGGAGGGAACACGGGGTGGATCCGAGGGAGTACTCGCACCGGTTGA
TGAAATTGTCGGAGGAGTTTATCCGAAGTATGGCGCCCAAGGCACCGAAT
CTGATGGCGCCCATAGTGAGGCCATTGGATGTCCTGTCGAGTGCCTGGGA
GGAGATCACGAAGGAGGAGGTGGTGGGAAGCAGTACGGCGTGTATTGCCA
CTCTGGACATGGAGCTGAATCAATTAAGCTTCTGTAATGTGGGCGATAAT
GGGATCATTATTATGAGACATATCGACTCAGACGTTGCGGGCTATATGCG
TGATAAAACCACGCCGAGACCTCTCAGGACGAATGATTTTAGGATTGCCT
TTGTCTCGCGCCAACAATTGCGGAGTTTTAATTTGCCGTATCAACTGGGT
CACACCAATACACAGTCGGAACATTGCTTTGACACTCCCTGCGATGCGGA
TAATTCTTCGATTCCCGTCATGCGTGGAGATGTGATCATCATGGGCACGG
ATGGTTTGTTTGACAACGTCGAGCTGGATGAAATCTGTTCAATTGCCTTG
GCGTGGGAACAGAAATGGTTCGCAAACGGCGCATATTCTTCGGGACTACG
TGCAGCGGATTTCCCCGAGGAAAGCGTGCAGGAGCTGGCGATGACGTTGT
GTAAACGAGCGAGGGAGTTGAGTTTGGACCAGAAGAGGGATAGTCCCTTT
GCAATTCTGGCGAAAGAGAATGACATTATGTGGGGGGGGGGGATGCCAGA
CGACTGTACAATTGTGGCGATGCGGGTGGTGAAGGTGTAA
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Synonyms
Publications