NO10G02360.2, NO10G02360.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02360.2
Unique NameNO10G02360.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2063
Alignment locationchr10:645636..648431 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:645636..648431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02360.2 vs.
Match: EWM25363.1 (hypothetical protein Naga_100005g17 [Nannochloropsis gaditana])

HSP 1 Score: 427.9 bits (1099), Expect = 4.600e-116
Identity = 267/495 (53.94%), Postives = 324/495 (65.45%), Query Frame = 0 
Query:   61 SSPSLTPLTIPSFLKGARSALLEANKK--HIKVVVGNEAADADTIVSSICLAHYLHATRSSEDSAAGVQYVPVLPLPRAELKFRPETLLLFRLANLKETTVSDMVFIDEVDLTEAAAEGKLAGVILTDHNKITEPLQGLGELIEGIVDHHEDQGLYEWITESKRDIAFSSEPPDLDSNHKHNNRDHNNSCSSIDSENDLSISRSLSTNSVTVG-RALVASTCTLVAERYLGHPSSSSSSSSFSPYSSSSSLLTTPVALLLLGVILLDSVSLDERAGKVTPRDEKAARALMEIVAGREGGIGGGKEALYKQLSGAKFDREWWRSLEVEEVLGLDYKSFKACTQSCISLRYGMSSILLPLEDFLKEGLSVESALETFATSRGIELLVLMFLVMPEGGEEGKEGGEVLRRALAIYASHPSFGSRLAELLLSSGTEAEGLALE----PVEVEVGGIDGGRGGERRLWCFRQGNTQASRKQVGPIFKRILEEGGEELLSK 549
            SSP  T   +P+FLK  R+ALL  N+K   +KVV+GNEAADAD+IVSSICLA +L  TRSS +    V YVP+LPL R ELK RPETLLLFRLA + E  + D V IDEVDL  A A+  L G++L DHNK+T  LQ LG  +E IVDHHEDQGLYE +T   RDIAF+++    D+ +           S+  S++D+S   SLS+NS T G RALVASTCTLVAERYL +P                 LL   VA+LLLGV+LLDSV LD  AGKVT RDE  A+AL   +AGR       ++ALY+ LSGAKFD+ WW+SLEV E LGLDYKSF A  Q+  +L +GMSSIL+ L D L +   VES LE FA+SRG+ELLVLM LVMP GG   K+GG  ++R LA+YAS P  G  LA +LL+  TEA  L LE    P   +    + G   E+RLWCF+QGN QASRKQV PI +R+LEE    L  K
Sbjct:   60 SSP--TTQDLPTFLKKGRAALLLCNEKKARVKVVLGNEAADADSIVSSICLAQFLQMTRSSNEKLGSVHYVPILPLRRTELKLRPETLLLFRLAGISEA-LRDTVCIDEVDLLGAHAKDALTGLVLVDHNKLTASLQNLGPAVERIVDHHEDQGLYEKVTGGNRDIAFAADAEGFDALYS----------SAQQSQSDISRVPSLSSNSSTAGGRALVASTCTLVAERYLSNPG----------------LLCPAVAMLLLGVVLLDSVCLDASAGKVTSRDEAVAKALAAGLAGRSDREWKSEQALYRNLSGAKFDQGWWQSLEVNEALGLDYKSFAASLQTRQALWFGMSSILVALNDLLCKVSGVESVLERFASSRGVELLVLMSLVMPAGG--AKDGG--IQRTLAVYASCPVLGRTLATVLLTPETEAGDLQLELWPRPEWWDRERCNEGGDREQRLWCFKQGNVQASRKQVEPILRRLLEENEGILFPK 521
The following BLAST results are available for this feature:
BLAST of NO10G02360.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25363.14.600e-11653.94hypothetical protein Naga_100005g17 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02360NO10G02360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02360.2NO10G02360.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02360.2.cds1NO10G02360.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02360.2.cds2NO10G02360.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02360.2.cds3NO10G02360.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02360.2.cds4NO10G02360.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02360.2 ID=NO10G02360.2|Name=NO10G02360.2|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp
GATGTAGGTGTATATAATCTGTTTTGATCGTGCAGTGCAGGGATGGGAGT
GTTCAGATGAAGCGAAGAAGCTTGTGGAACTTCTCGGCGAAGCGCGTGTG
CGGAAAGAGTGATGCCGGCGATTCTAGCAACGGCGGGCGACCAGTCGCAT
CTGCGCTGTACAATGCACAAGAGAGGGCGTGTGCGAAAAATTGGAGCGCG
GACCGGGAGGGAGAAAGGAACACTGCGTGTACCAGGCAAGGGGCGTGGGT
GGGCAACCAGCCGGGGCGGACTTGCTGTCTTCCGGGTCGCATCTTTGTCG
TGAGTTTCGTTTGCCTGCCCCACTCCCGCTCCCCCATCCCACGCATCATT
ACACACGCAACAGGAAAATCAGGCAGTCAATGCCTGGTCATGGTCCCAGA
GCCACTTTCCTTTCCCTCCTCGTTACTAGCGCAGTGGTTGCATTTTCTCC
CACCTCCAGGTCCAGAAGCATTTTCTTCCTCTTCAGTCCACGCCGGTGCG
ACCCCCTCCTCTTCTCATTTGCCACTCGTCTTAACCCAGCACCCACGCAG
ATGGCTTCTTCCTCTCCTTCCCTAACCCCATTGACGATTCCGTCGTTTCT
AAAAGGAGCTCGTTCGGCGTTGCTCGAAGCCAATAAGAAGCACATCAAGG
TAGTTGTAGGGAACGAAGCGGCCGATGCCGACACCATTGTCTCCTCTATC
TGCCTTGCCCACTACTTGCATGCCACCCGCTCCTCCGAGGACAGCGCAGC
AGGTGTACAATATGTGCCTGTCTTGCCCTTGCCACGCGCCGAGCTCAAGT
TTCGGCCTGAGACATTGCTGCTGTTTCGTTTGGCGAATCTGAAGGAGACT
ACTGTAAGCGACATGGTCTTCATCGACGAAGTGGACTTAACCGAGGCCGC
TGCCGAAGGGAAACTTGCTGGCGTGATACTCACGGATCACAACAAGATTA
CCGAGCCCCTGCAGGGTCTGGGAGAGCTGATCGAAGGCATTGTCGATCAC
CACGAAGACCAAGGCCTTTACGAATGGATCACGGAATCCAAGCGTGACAT
CGCGTTTTCGTCCGAACCACCCGACTTGGATAGCAACCACAAGCACAATA
ACCGCGATCACAACAACAGCTGCAGCAGCATCGACAGCGAAAATGACCTG
AGTATCAGTCGCAGCCTGAGTACCAATAGTGTAACTGTTGGCCGTGCTTT
AGTGGCATCTACATGCACGTTAGTGGCAGAGCGATACCTCGGCCACCCCT
CCTCCTCCTCCTCCTCCTCCTCCTTCTCCCCCTACTCCTCCTCTTCCTCC
CTCCTGACCACTCCCGTGGCATTACTCCTCCTAGGAGTCATCTTATTGGA
TTCTGTATCTTTGGATGAAAGGGCGGGAAAAGTCACCCCAAGGGACGAGA
AGGCTGCAAGAGCATTGATGGAGATTGTGGCAGGGAGGGAGGGAGGGATT
GGTGGAGGGAAGGAGGCCTTGTATAAGCAGCTGTCGGGGGCGAAGTTTGA
TCGAGAGTGGTGGCGCTCTTTGGAGGTAGAAGAAGTGTTAGGGCTTGACT
ATAAGTCCTTCAAGGCCTGCACTCAAAGCTGTATTTCCCTTCGATACGGA
ATGAGCTCAATTCTTTTGCCCTTGGAAGATTTTCTGAAGGAAGGGTTATC
TGTCGAAAGTGCCTTGGAGACGTTCGCCACTTCCCGAGGTATTGAACTCC
TCGTACTCATGTTCCTCGTCATGCCGGAGGGGGGAGAGGAAGGAAAGGAG
GGGGGAGAGGTGCTCCGACGCGCACTTGCCATCTACGCCTCTCATCCCTC
TTTTGGATCTCGACTCGCAGAGCTTTTGCTTTCCTCAGGTACGGAGGCAG
AAGGGTTGGCACTGGAGCCCGTGGAGGTGGAAGTAGGAGGGATAGATGGA
GGGAGGGGTGGAGAAAGGAGATTGTGGTGTTTTCGCCAGGGGAACACGCA
GGCTTCGAGGAAACAGGTGGGGCCTATTTTTAAGAGGATCTTGGAGGAGG
GGGGGGAGGAATTGTTGTCGAAGTGACTTCGAGGAAGCAGGTGGGGCCTA
TTTTGAAGAGGAT
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protein sequence of NO10G02360.2

>NO10G02360.2-protein ID=NO10G02360.2-protein|Name=NO10G02360.2|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MPGHGPRATFLSLLVTSAVVAFSPTSRSRSIFFLFSPRRCDPLLFSFATR
LNPAPTQMASSSPSLTPLTIPSFLKGARSALLEANKKHIKVVVGNEAADA
DTIVSSICLAHYLHATRSSEDSAAGVQYVPVLPLPRAELKFRPETLLLFR
LANLKETTVSDMVFIDEVDLTEAAAEGKLAGVILTDHNKITEPLQGLGEL
IEGIVDHHEDQGLYEWITESKRDIAFSSEPPDLDSNHKHNNRDHNNSCSS
IDSENDLSISRSLSTNSVTVGRALVASTCTLVAERYLGHPSSSSSSSSFS
PYSSSSSLLTTPVALLLLGVILLDSVSLDERAGKVTPRDEKAARALMEIV
AGREGGIGGGKEALYKQLSGAKFDREWWRSLEVEEVLGLDYKSFKACTQS
CISLRYGMSSILLPLEDFLKEGLSVESALETFATSRGIELLVLMFLVMPE
GGEEGKEGGEVLRRALAIYASHPSFGSRLAELLLSSGTEAEGLALEPVEV
EVGGIDGGRGGERRLWCFRQGNTQASRKQVGPIFKRILEEGGEELLSK*
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mRNA from alignment at chr10:645636..648431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02360.2 ID=NO10G02360.2|Name=NO10G02360.2|organism=Nannochloropsis oceanica|type=mRNA|length=2796bp|location=Sequence derived from alignment at chr10:645636..648431- (Nannochloropsis oceanica)
GATGTAGGTGTATATAATCTGTTTTGATCGTGCAGTGCAGGGATGGGAGT
GTTCAGATGAAGCGAAGAAGCTTGTGGAACTTCTCGGCGAAGCGCGTGTG
CGGAAAGAGTGATGCCGGCGATTCTAGCAACGGCGGGCGACCAGTCGCAT
CTGCGCTGTACAATGCACAAGAGAGGGCGTGTGCGAAAAATTGGAGCGCG
GACCGGGAGGGAGAAAGGAACACTGCGTGTACCAGGCAAGGGGCGTGGGT
GGGCAACCAGCCGGGGCGGACTTGCTGTCTTCCGGGTCGCATCTTTGTCG
TGAGTTTCGTTTGCCTGCCCCACTCCCGCTCCCCCATCCCACGCATCATT
ACACACGCAACAGGAAAATCAGGCAGTCAATGCCTGGTCATGGTCCCAGA
GCCACTTTCCTTTCCCTCCTCGTTACTAGCGCAGTGGTTGCATTTTCTCC
CACCTCCAGGTCCAGAAGCATTTTCTTCCTCTTCAGTCCACGCCGGTGCG
ACCCCCTCCTCTTCTCATTTGCCACTCGTCTTAACCCAGCACCCACGCAG
ATGGCTTCTTCCTCTCCTTCCCTAACCCCATTGACGATTCCGTCGTTTCT
AAAAGGAGCTCGTTCGGCGTTGCTCGAAGCCAATAAGAAGCACATCAAGG
TAGTTGTAGGGAACGAAGCGGCCGATGCCGACACCATTGTCTCCTCTATC
TGCCTTGCCCACTACTTGCATGCCACCCGCTCCTCCGAGGACAGCGCAGC
AGGTGTACAATATGTGCCTGTCTTGCCCTTGCCACGCGCCGAGCTCAAGT
TTCGGCCTGAGACATTGCTGCTGTTTCGTTTGGCGAATCTGAAGGAGACT
ACTGTAAGCGACATGGTCTTCATCGACGAAGTGGACTTAACCGAGGCCGC
TGCCGAAGGGAAACTTGCTGGCGTGATACTCACGGATCACAACAAGATTA
CCGAGCCCCTGCAGGGTCTGGGAGAGGTAATTTGCCTTGTCCTTTCCTTA
TGTGGAACTATTTATGTTCGTCACCACTATCCCATCACCCAATCTTCCAT
CCCTCTCCCCGTCCCTCCCTCCCTCCCTCTACCCACTCAGCTGATCGAAG
GCATTGTCGATCACCACGAAGACCAAGGCCTTTACGAATGGATCACGGAA
TCCAAGCGTGACATCGCGTTTTCGTCCGAACCACCCGACTTGGATAGCAA
CCACAAGCACAATAACCGCGATCACAACAACAGCTGCAGCAGCATCGACA
GCGAAAATGACCTGAGTATCAGTCGCAGCCTGAGTACCAATAGTGTAACT
GTTGGCCGTGCTTTAGTGGCATCTACATGCACGTTAGTGGCAGAGCGATA
CCTCGGCCACCCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCCCCTACT
CCTCCTCTTCCTCCCTCCTGACCACTCCCGTGGCATTACTCCTCCTAGGA
GTCATCTTATTGGATTCTGTATCTTTGGATGAAAGGGCGGGAAAAGTCAC
CCCAAGGGACGAGAAGGCTGCAAGAGCATTGATGGAGATTGTGGCAGGGA
GGGAGGGAGGGATTGGTGGAGGGAAGGAGGCCTTGTATAAGCAGCTGTCG
GGGGCGAAGTTTGATCGAGAGTGAGTATGGAAGAGTTCGTCGGTGTTCTT
GTCCATGTGGCTGCTTCGTCTCCCCTATTTGCCTAAGGCAGAAGCATAAG
TATGAAGGCATCAAGCTATGTCCTTATATTTTTGATATTTTTTTCCATTT
GTCGCCAACTCCCTCCTCTGTACTTCCAATCCCCTCCCACTGTGTCCAGG
TGGTGGCGCTCTTTGGAGGTAGAAGAAGTGTTAGGGCTTGACTATAAGTC
CTTCAAGGCCTGCACTCAAAGCTGTATTTCCCTTCGATACGGAATGAGCT
CAATTCTTTTGCCCTTGGAAGGTAAGTGTGTGTGTGGCATAAGAGAGATG
GAAGGAGGGAGGGAGGGAGGTGGAGGAGTAAGGGGATGGAGGATTAAGGG
GATAACGATGTGTATTGCCGCATAGATTTGTTTTTGCTGAAATCTTAAAA
GAATAGAATAATTTGTCTTTTCTCATGAAAGAACACAATTATCCCATCTC
TCTTTTGTAGACACACGGATATCCACACAGAGACACACACATAGACACAC
ACACAAACACACACAAACACACGCAAATACACCGACTCTCTAAAGCCGCG
CCCTTTCGATCATACCCATCCTTCAGACCCTCACCACTATCCCGAGGCAT
CGAAGTTCTAGTCCTCATATCCAAGCAGGCCGAGGTACTCAACCATCAAC
ACACCTCACCCTTGCCCTGCCGATCCCCCACCCCAAACCATACATATGTA
TAAATATGTAGATTTTCTGAAGGAAGGGTTATCTGTCGAAAGTGCCTTGG
AGACGTTCGCCACTTCCCGAGGTATTGAACTCCTCGTACTCATGTTCCTC
GTCATGCCGGAGGGGGGAGAGGAAGGAAAGGAGGGGGGAGAGGTGCTCCG
ACGCGCACTTGCCATCTACGCCTCTCATCCCTCTTTTGGATCTCGACTCG
CAGAGCTTTTGCTTTCCTCAGGTACGGAGGCAGAAGGGTTGGCACTGGAG
CCCGTGGAGGTGGAAGTAGGAGGGATAGATGGAGGGAGGGGTGGAGAAAG
GAGATTGTGGTGTTTTCGCCAGGGGAACACGCAGGCTTCGAGGAAACAGG
TGGGGCCTATTTTTAAGAGGATCTTGGAGGAGGGGGGGGAGGAATTGTTG
TCGAAGTGACTTCGAGGAAGCAGGTGGGGCCTATTTTGAAGAGGAT
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Coding sequence (CDS) from alignment at chr10:645636..648431-

>NO10G02360.2 ID=NO10G02360.2|Name=NO10G02360.2|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at chr10:645636..648431- (Nannochloropsis oceanica)
ATGCCTGGTCATGGTCCCAGAGCCACTTTCCTTTCCCTCCTCGTTACTAG
CGCAGTGGTTGCATTTTCTCCCACCTCCAGGTCCAGAAGCATTTTCTTCC
TCTTCAGTCCACGCCGGTGCGACCCCCTCCTCTTCTCATTTGCCACTCGT
CTTAACCCAGCACCCACGCAGATGGCTTCTTCCTCTCCTTCCCTAACCCC
ATTGACGATTCCGTCGTTTCTAAAAGGAGCTCGTTCGGCGTTGCTCGAAG
CCAATAAGAAGCACATCAAGGTAGTTGTAGGGAACGAAGCGGCCGATGCC
GACACCATTGTCTCCTCTATCTGCCTTGCCCACTACTTGCATGCCACCCG
CTCCTCCGAGGACAGCGCAGCAGGTGTACAATATGTGCCTGTCTTGCCCT
TGCCACGCGCCGAGCTCAAGTTTCGGCCTGAGACATTGCTGCTGTTTCGT
TTGGCGAATCTGAAGGAGACTACTGTAAGCGACATGGTCTTCATCGACGA
AGTGGACTTAACCGAGGCCGCTGCCGAAGGGAAACTTGCTGGCGTGATAC
TCACGGATCACAACAAGATTACCGAGCCCCTGCAGGGTCTGGGAGAGCTG
ATCGAAGGCATTGTCGATCACCACGAAGACCAAGGCCTTTACGAATGGAT
CACGGAATCCAAGCGTGACATCGCGTTTTCGTCCGAACCACCCGACTTGG
ATAGCAACCACAAGCACAATAACCGCGATCACAACAACAGCTGCAGCAGC
ATCGACAGCGAAAATGACCTGAGTATCAGTCGCAGCCTGAGTACCAATAG
TGTAACTGTTGGCCGTGCTTTAGTGGCATCTACATGCACGTTAGTGGCAG
AGCGATACCTCGGCCACCCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCC
CCCTACTCCTCCTCTTCCTCCCTCCTGACCACTCCCGTGGCATTACTCCT
CCTAGGAGTCATCTTATTGGATTCTGTATCTTTGGATGAAAGGGCGGGAA
AAGTCACCCCAAGGGACGAGAAGGCTGCAAGAGCATTGATGGAGATTGTG
GCAGGGAGGGAGGGAGGGATTGGTGGAGGGAAGGAGGCCTTGTATAAGCA
GCTGTCGGGGGCGAAGTTTGATCGAGAGTGGTGGCGCTCTTTGGAGGTAG
AAGAAGTGTTAGGGCTTGACTATAAGTCCTTCAAGGCCTGCACTCAAAGC
TGTATTTCCCTTCGATACGGAATGAGCTCAATTCTTTTGCCCTTGGAAGA
TTTTCTGAAGGAAGGGTTATCTGTCGAAAGTGCCTTGGAGACGTTCGCCA
CTTCCCGAGGTATTGAACTCCTCGTACTCATGTTCCTCGTCATGCCGGAG
GGGGGAGAGGAAGGAAAGGAGGGGGGAGAGGTGCTCCGACGCGCACTTGC
CATCTACGCCTCTCATCCCTCTTTTGGATCTCGACTCGCAGAGCTTTTGC
TTTCCTCAGGTACGGAGGCAGAAGGGTTGGCACTGGAGCCCGTGGAGGTG
GAAGTAGGAGGGATAGATGGAGGGAGGGGTGGAGAAAGGAGATTGTGGTG
TTTTCGCCAGGGGAACACGCAGGCTTCGAGGAAACAGGTGGGGCCTATTT
TTAAGAGGATCTTGGAGGAGGGGGGGGAGGAATTGTTGTCGAAGTGA
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Synonyms
Publications