NO10G02150.1, NO10G02150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02150.1
Unique NameNO10G02150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1980
Alignment locationchr10:593055..595368 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:593055..595368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02150.1 vs.
Match: EWM25440.1 (ddb1- and cul4-associated factor [Nannochloropsis gaditana])

HSP 1 Score: 751.1 bits (1938), Expect = 1.900e-213
Identity = 363/426 (85.21%), Postives = 387/426 (90.85%), Query Frame = 0 
Query:    1 MKIKTLSRSEEAFTRECKGDVVKVFRNLEPALHPFDKAREYTRALTATKLDKMFAKPLVGALDGHTDGVYCSALSKRNLVQFLTGACDGEVRVWDMNVRKCVWRAYAHSGFVRGLSVAPDGGTFFSCGDKTVKQWKLCVVGDTSEEPSAMNTWLHTESLTSIDHHWRDTRFATAADSRVLVWDHARSSPIQSFSWGCDAISCVRYNPAEHSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFDMRKLVQAKLIHKDHVGAVMDLAFSPTGQEFVTGSYDRTVRIFNHREGRSREVYHTKRMQRIFCVNFSGDGRFVLTGSDDTNLRIWKAQASKALGAKVSRAEKKLEYTEALKKRYQHMPEVRRIAKHRHVPKAIK---------KAQELVRVQQDSQRR 418
            MKIKTLSR EE FTRECKGDVVKVFRNL+PALHPFDKAREYTRAL ATKLDK+FAKP +GALDGH DGV+CSALSKRNLVQFLTGACDGEVRVWD+NVRKCVWRAYAH+GFVRGLSVAP GGTFFSCGDKTVKQW LCV  D+ +EP+A+NTWLH+E+LTSIDHHWR+  FATAAD+RVLVWDHARS+P+QSFSWGCDAISCVRYNPAE SLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFD+RKL QAKLIHKDHVGAVMDLAFSPTGQEFVTGSYDRTVRIF HREGRSREVYHTKRMQR+FCVNFSGDGRFVLTGSDDTNLRIWKA+AS+ LG KV RAEKKLEY EALKKRYQHMPEVRRIAKHRH     K         K  ++V + Q + RR
Sbjct:    1 MKIKTLSRCEETFTRECKGDVVKVFRNLDPALHPFDKAREYTRALQATKLDKLFAKPFIGALDGHADGVFCSALSKRNLVQFLTGACDGEVRVWDLNVRKCVWRAYAHAGFVRGLSVAPGGGTFFSCGDKTVKQWTLCVADDSRQEPAALNTWLHSETLTSIDHHWRNAHFATAADTRVLVWDHARSNPVQSFSWGCDAISCVRYNPAERSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFDLRKLDQAKLIHKDHVGAVMDLAFSPTGQEFVTGSYDRTVRIFGHREGRSREVYHTKRMQRVFCVNFSGDGRFVLTGSDDTNLRIWKAEASQQLGVKVPRAEKKLEYEEALKKRYQHMPEVRRIAKHRHRANDAKLKIAGSMQEKIAKIVNLCQSANRR 426
The following BLAST results are available for this feature:
BLAST of NO10G02150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25440.11.900e-21385.21ddb1- and cul4-associated factor [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02150NO10G02150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02150.1NO10G02150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02150.1.cds1NO10G02150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02150.1.cds2NO10G02150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02150.1.cds3NO10G02150.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02150.1 ID=NO10G02150.1|Name=NO10G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1980bp
ATAATGACCAAAAAAACGTGTCTCGGCGACCATCGCCATCCTTCCCCAAT
TCCCGACATGAGAATATTGAAGCTTTCAATCACCATGGGCTTCATGTCCT
TTGTATCCAGGTCCGCGATGGCGTCGTCCAAGGTCCACAACTGCTCCTAC
ACGCTAATGTGTAATACAAGCAGGTTATTCACGCCCTTGCTAGCGCGTAA
AACGTGCTGTAATCGGAAGATTTGATGCCCGATGCGTGTCCAAAGCTCCC
GGTGAAGTTCAGACTCTGACGTCGCCGAGTCGGACGCCGTGTGTGCACCT
TTCTCCCCCACCATTCCCACACTCCTCTAGAACGGGCTCAATCTTTATGT
GGCCTTCAATTGGTTCAAACAAACTTCCCTCCTAGACAAGGTCTTAATTG
CGAGGAAGGGCAAGGTGGTGAGGCCCGGCACACTTTCGCGGTGGTTTTGT
GACCATTGAGGCTGAGGATATGGATACTAACTTTCCCCCATCCACCGTAC
TCAACAACACAGCATCATGAAGATTAAGACACTGAGTCGGTCCGAAGAGG
CCTTCACCAGGGAGTGCAAAGGCGACGTTGTCAAGGTCTTCCGTAACCTG
GAGCCGGCCCTCCACCCCTTTGACAAGGCCCGCGAATATACCCGGGCGCT
CACGGCTACCAAGCTGGACAAGATGTTTGCCAAACCCCTTGTCGGCGCCC
TGGACGGGCATACGGACGGTGTCTACTGCTCGGCTCTAAGCAAAAGGAAC
TTGGTCCAGTTCCTCACTGGAGCTTGTGACGGCGAGGTGCGGGTGTGGGA
TATGAACGTGCGCAAATGTGTCTGGCGGGCATACGCACATTCGGGTTTTG
TACGGGGTCTATCAGTAGCGCCTGACGGTGGCACATTTTTTTCCTGTGGG
GACAAAACCGTTAAGCAATGGAAGCTGTGCGTGGTTGGGGACACGAGCGA
GGAACCTTCAGCAATGAATACCTGGTTGCACACAGAAAGCCTCACTTCCA
TCGACCACCACTGGCGGGACACCCGCTTCGCCACCGCCGCCGACTCTCGG
GTCTTAGTCTGGGACCATGCCCGTTCCAGTCCCATCCAATCCTTCTCCTG
GGGCTGCGATGCCATTTCATGCGTGCGGTATAACCCTGCAGAGCATTCCT
TGCTGGCTAGTACCGGATCTGATCGAGCCGTGACCCTCTTTGATACCCGC
GAAGGGGCCGCGATGCGCAAAGCAGTGCTGGTTATGCGGTCCAACGCCTT
GGCTTGGAACCCCCAGGAGCCATTGAACTTCACGGTGGCCAGCGAGGATC
ACAATTTATATACTTTTGACATGCGGAAGCTGGTGCAGGCCAAGCTCATC
CACAAGGACCACGTGGGGGCAGTCATGGATTTAGCTTTCTCCCCCACTGG
GCAGGAGTTTGTCACGGGCTCCTATGATCGCACTGTGCGTATTTTCAACC
ACCGGGAGGGACGCAGTCGCGAGGTGTATCACACCAAGCGAATGCAGCGT
ATCTTCTGCGTGAATTTCTCGGGGGATGGGCGGTTTGTCCTGACGGGGTC
GGATGACACTAACTTGCGGATTTGGAAGGCGCAGGCCTCGAAGGCGCTGG
GAGCCAAGGTGTCCCGGGCAGAGAAGAAATTGGAGTACACTGAGGCGTTG
AAGAAGCGTTACCAACACATGCCGGAGGTGCGACGTATTGCTAAACACCG
CCATGTACCCAAAGCCATCAAGAAGGCACAGGAGCTGGTCCGTGTGCAGC
AAGACAGCCAGCGCCGCAAGTCTCAGAACCGCCGAAAGCACGCCAAGCCC
GACAGCGACGAGTTCAAGTTTGTACCGGAACGCAAACAACGGGTCGTAGC
CGAGATGGCGTGAGAATGTTGCATGCAATGTCATTTGTGCAGGCTTGTAA
AAATTACGTACGGGGGGTTTGAAGAGGAAGCACATCGATAGCAGCGGCGA
AAAGTAACAAAGTCAGTTGTCATAGTTGTG
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protein sequence of NO10G02150.1

>NO10G02150.1-protein ID=NO10G02150.1-protein|Name=NO10G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MKIKTLSRSEEAFTRECKGDVVKVFRNLEPALHPFDKAREYTRALTATKL
DKMFAKPLVGALDGHTDGVYCSALSKRNLVQFLTGACDGEVRVWDMNVRK
CVWRAYAHSGFVRGLSVAPDGGTFFSCGDKTVKQWKLCVVGDTSEEPSAM
NTWLHTESLTSIDHHWRDTRFATAADSRVLVWDHARSSPIQSFSWGCDAI
SCVRYNPAEHSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQ
EPLNFTVASEDHNLYTFDMRKLVQAKLIHKDHVGAVMDLAFSPTGQEFVT
GSYDRTVRIFNHREGRSREVYHTKRMQRIFCVNFSGDGRFVLTGSDDTNL
RIWKAQASKALGAKVSRAEKKLEYTEALKKRYQHMPEVRRIAKHRHVPKA
IKKAQELVRVQQDSQRRKSQNRRKHAKPDSDEFKFVPERKQRVVAEMA*
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mRNA from alignment at chr10:593055..595368+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02150.1 ID=NO10G02150.1|Name=NO10G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2314bp|location=Sequence derived from alignment at chr10:593055..595368+ (Nannochloropsis oceanica)
ATAATGACCAAAAAAACGTGTCTCGGCGACCATCGCCATCCTTCCCCAAT
TCCCGACATGAGAATATTGAAGCTTTCAATCACCATGGGCTTCATGTCCT
TTGTATCCAGGTCCGCGATGGCGTCGTCCAAGGTCCACAACTGCTCCTAC
ACGCTAATGTGTAATACAAGCAGGTTATTCACGCCCTTGCTAGCGCGTAA
AACGTGCTGTAATCGGAAGATTTGATGCCCGATGCGTGTCCAAAGCTCCC
GGTGAAGTTCAGACTCTGACGTCGCCGAGTCGGACGCCGTGTGTGCACCT
TTCTCCCCCACCATTCCCACACTCCTCTAGAACGGGCTCAATCTTTATGT
GGCCTTCAATTGGTTCAAACAAACTTCCCTCCTAGACAAGGTCTTAATTG
CGAGGAAGGGCAAGGTGGTGAGGCCCGGCACACTTTCGCGGTGGTTTTGT
GACCATTGAGGCTGAGGATATGGATACTAACTTTCCCCCATCCACCGTAC
TCAACAACACAGCATCATGAAGATTAAGACACTGAGTCGGTCCGAAGAGG
CCTTCACCAGGGAGTGCAAAGGCGACGTTGTCAAGGTCTTCCGTAACCTG
GAGCCGGCCCTCCACCCCTTTGACAAGGCCCGCGAATATACCCGGGCGCT
CACGGCTACCAAGCTGGACAAGATGTTTGCCAAACCCCTTGTCGGTGCGT
GTGTGGTTGTGGGGTGGGGTTCTGGGTATTATATGACTCTCTGGAAGAGG
TATGGGAACGCTTGTATGCGTGGGGCTCGTGTCCCTCAGATAGGCTGTAA
GATCAAGGGTCATGCCACAGCTAATGGTGCCCTTAGGCAAGGCAGGTGCC
CGGTACGATCAGTCTCCATCAAAGCCTACGATAATGATAAGATTGCGGCT
TACAATTTCCCTTCGCCCAATCTTCATTCCTTATTTTTTTTAGGCGCCCT
GGACGGGCATACGGACGGTGTCTACTGCTCGGCTCTAAGCAAAAGGAACT
TGGTCCAGTTCCTCACTGGAGCTTGTGACGGCGAGGTGCGGGTGTGGGAT
ATGAACGTGCGCAAATGTGTCTGGCGGGCATACGCACATTCGGGTTTTGT
ACGGGGTCTATCAGTAGCGCCTGACGGTGGCACATTTTTTTCCTGTGGGG
ACAAAACCGTTAAGCAATGGAAGCTGTGCGTGGTTGGGGACACGAGCGAG
GTACGTGATCCGCATTGCGCCCTCCATCTTAGTAAGTCACCAGATCACAT
AGATAATTTATTCCTCCCTCCCACATCCCTAATAGGAACCTTCAGCAATG
AATACCTGGTTGCACACAGAAAGCCTCACTTCCATCGACCACCACTGGCG
GGACACCCGCTTCGCCACCGCCGCCGACTCTCGGGTCTTAGTCTGGGACC
ATGCCCGTTCCAGTCCCATCCAATCCTTCTCCTGGGGCTGCGATGCCATT
TCATGCGTGCGGTATAACCCTGCAGAGCATTCCTTGCTGGCTAGTACCGG
ATCTGATCGAGCCGTGACCCTCTTTGATACCCGCGAAGGGGCCGCGATGC
GCAAAGCAGTGCTGGTTATGCGGTCCAACGCCTTGGCTTGGAACCCCCAG
GAGCCATTGAACTTCACGGTGGCCAGCGAGGATCACAATTTATATACTTT
TGACATGCGGAAGCTGGTGCAGGCCAAGCTCATCCACAAGGACCACGTGG
GGGCAGTCATGGATTTAGCTTTCTCCCCCACTGGGCAGGAGTTTGTCACG
GGCTCCTATGATCGCACTGTGCGTATTTTCAACCACCGGGAGGGACGCAG
TCGCGAGGTGTATCACACCAAGCGAATGCAGCGTATCTTCTGCGTGAATT
TCTCGGGGGATGGGCGGTTTGTCCTGACGGGGTCGGATGACACTAACTTG
CGGATTTGGAAGGCGCAGGCCTCGAAGGCGCTGGGAGCCAAGGTGTCCCG
GGCAGAGAAGAAATTGGAGTACACTGAGGCGTTGAAGAAGCGTTACCAAC
ACATGCCGGAGGTGCGACGTATTGCTAAACACCGCCATGTACCCAAAGCC
ATCAAGAAGGCACAGGAGCTGGTCCGTGTGCAGCAAGACAGCCAGCGCCG
CAAGTCTCAGAACCGCCGAAAGCACGCCAAGCCCGACAGCGACGAGTTCA
AGTTTGTACCGGAACGCAAACAACGGGTCGTAGCCGAGATGGCGTGAGAA
TGTTGCATGCAATGTCATTTGTGCAGGCTTGTAAAAATTACGTACGGGGG
GTTTGAAGAGGAAGCACATCGATAGCAGCGGCGAAAAGTAACAAAGTCAG
TTGTCATAGTTGTG
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Coding sequence (CDS) from alignment at chr10:593055..595368+

>NO10G02150.1 ID=NO10G02150.1|Name=NO10G02150.1|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at chr10:593055..595368+ (Nannochloropsis oceanica)
ATGAAGATTAAGACACTGAGTCGGTCCGAAGAGGCCTTCACCAGGGAGTG
CAAAGGCGACGTTGTCAAGGTCTTCCGTAACCTGGAGCCGGCCCTCCACC
CCTTTGACAAGGCCCGCGAATATACCCGGGCGCTCACGGCTACCAAGCTG
GACAAGATGTTTGCCAAACCCCTTGTCGGCGCCCTGGACGGGCATACGGA
CGGTGTCTACTGCTCGGCTCTAAGCAAAAGGAACTTGGTCCAGTTCCTCA
CTGGAGCTTGTGACGGCGAGGTGCGGGTGTGGGATATGAACGTGCGCAAA
TGTGTCTGGCGGGCATACGCACATTCGGGTTTTGTACGGGGTCTATCAGT
AGCGCCTGACGGTGGCACATTTTTTTCCTGTGGGGACAAAACCGTTAAGC
AATGGAAGCTGTGCGTGGTTGGGGACACGAGCGAGGAACCTTCAGCAATG
AATACCTGGTTGCACACAGAAAGCCTCACTTCCATCGACCACCACTGGCG
GGACACCCGCTTCGCCACCGCCGCCGACTCTCGGGTCTTAGTCTGGGACC
ATGCCCGTTCCAGTCCCATCCAATCCTTCTCCTGGGGCTGCGATGCCATT
TCATGCGTGCGGTATAACCCTGCAGAGCATTCCTTGCTGGCTAGTACCGG
ATCTGATCGAGCCGTGACCCTCTTTGATACCCGCGAAGGGGCCGCGATGC
GCAAAGCAGTGCTGGTTATGCGGTCCAACGCCTTGGCTTGGAACCCCCAG
GAGCCATTGAACTTCACGGTGGCCAGCGAGGATCACAATTTATATACTTT
TGACATGCGGAAGCTGGTGCAGGCCAAGCTCATCCACAAGGACCACGTGG
GGGCAGTCATGGATTTAGCTTTCTCCCCCACTGGGCAGGAGTTTGTCACG
GGCTCCTATGATCGCACTGTGCGTATTTTCAACCACCGGGAGGGACGCAG
TCGCGAGGTGTATCACACCAAGCGAATGCAGCGTATCTTCTGCGTGAATT
TCTCGGGGGATGGGCGGTTTGTCCTGACGGGGTCGGATGACACTAACTTG
CGGATTTGGAAGGCGCAGGCCTCGAAGGCGCTGGGAGCCAAGGTGTCCCG
GGCAGAGAAGAAATTGGAGTACACTGAGGCGTTGAAGAAGCGTTACCAAC
ACATGCCGGAGGTGCGACGTATTGCTAAACACCGCCATGTACCCAAAGCC
ATCAAGAAGGCACAGGAGCTGGTCCGTGTGCAGCAAGACAGCCAGCGCCG
CAAGTCTCAGAACCGCCGAAAGCACGCCAAGCCCGACAGCGACGAGTTCA
AGTTTGTACCGGAACGCAAACAACGGGTCGTAGCCGAGATGGCGTGA
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Synonyms
Publications