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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:583484..588220 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G02120.2 vs.
Match: XP_020772635.1 (E2F-associated phosphoprotein [Boleophthalmus pectinirostris]) HSP 1 Score: 111.7 bits (278), Expect = 2.700e-21 Identity = 70/182 (38.46%), Postives = 100/182 (54.95%), Query Frame = 0
Query: 25 LYDENADEEDEKWIIKHWRQGQAL---PIQQRSATAAR---STDAVLNCPCCFTTVCMECQRHAIYKTQYRAMFIINCRVKTNENLSDTRKEEEYAREEVEAETTPFTQSIPPAAHGE-EGTRDSDKQQRQHDQQQNKKGVRWNDILDGEAPVRAVECETCGTVVGVQDEDEVTHFFNVIAS 200
LYD + D+ D+ W+ RQ Q+ P R+A ++ S+DAVLNCP C TT+C++CQRH Y+TQYRAMF++NC VK +E L + + P TQ+ P G+ +G Q+++ DQ+ + LD E V+C C T V V D+DEV HFFN++AS
Sbjct: 145 LYDPDEDDRDQAWVDNKRRQYQSRRRPPGGARAAVRSQGLCSSDAVLNCPACMTTLCLDCQRHEKYRTQYRAMFVMNCTVKKDEVLRYKTQPDPRKFRNRRKRKAPGTQTGPELNQGQNQGLEQGLNQEQRPDQRP--------EGLDSEEVYHPVQCSECSTEVAVFDKDEVYHFFNILAS 318
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G02120.2 ID=NO10G02120.2|Name=NO10G02120.2|organism=Nannochloropsis oceanica|type=mRNA|length=4371bp ATGTCAAGCATGGATATTTATTTATTTGCTCAAACTGTGAACCACTAACT CATGACACTTTGATTAGTTTCTGGTGAGAAATCTGATGAATTTTTCGTGA CCTCCTTCCACATGACATTTTTGGCAGAGGAATTAAAAGACGCATTAGCT CACCAGATAATCGTCTTCGCCAAAGTCAAAAAAGGAAACATTCAACGATT TTGTGTATTTTCTTCAATCTCCTCTGCTACTTTCAGGGAGACACTTGCAT GCTGCTGCTATTGCTCCTCGCGATTCCATCCCCTTCTTGGTTGGCCGCAT CCTCTGCCGCGTCGTGCAGCAGAGCTGACGCTTCGGCGCGAAAAAGACGC GAATACAGTTCGCCATGCACGGCAAGATTGTGCTCCAGGACACGGCGCAG CCCATTACCGGTGGCCGCAAGCTGCACGCTAAAGGTCTGGAAGCCGAAGC GCCTTACGAGTTCGCTAGCACCTGCAGCGTCGCCACGTGCGTGGAGGTTG AGCACATCGGCCAGTCGCGCAAAAAGAAGGTTGTACAAGGGATTTTCCAA GCTCCCGGCGTTTTGGAGCATGCCGCGCAACGTAGCTGCCTGCTCGTTGC TTATGGCCGTCCCGGCGTCGGCGTGAATATGATGGGCAGACTGCATCACC TCCTCAACTAAATGCGGAAGCGTGACCTCGCCGTCGTCCTGCAGTATGGT GTACAGTCGCGTCTCTAATGCTAAAAGAAACTTTCTCACAGTACTGTATC GGCACACAGGTAAATCAGGGCTAGGAGTGACCAGAAATTGACGCAATAGA GAGGAGTAAACTGCCACGAGTGATAAGCGATCCAGCTCGTCACGGAACTC AGCCATACGCCGCCCATCATGGAAGAGTGTCTCGGGCAGCTTGGCTTTCA TGGGATTATCCAAGCGCACAGGCTTGCGGAGGAGGCACATTAAGGCGTCG GCGAGTAGATATCGGTGGGCTTGCGTATTACCTTCGGCAATTAATGGAAG CTGCGCGACACGCTCCGTGGAAGCAAGAACATCACGGAGCCAGGCCTGGG TGTGTATGAGCTTCACCTCGCCCTCTTGCAGTCGCTCCGCAAACTTCTGC CGCTCGTACACCACACCATGTTCGATCAGAAAAGGTCGAAGCATCTGCAT GTGGGCATTTGCTATGTCCCGGCGCGTCTCATCGATGCGCTCGAAAATGG TCTGAAACACGCCCGGGAGGAGCGCAACAAAAGCCGGGGTAGGCTTCGTG CTACCGCCCTGGCCATCCTTCCCTTCATTCATGGCTGCCTGAGCCTGCAC TTCAACCTCTGCGAACCAAGCCCTTGTCTCGGCAGCCCGGACAGGCGCCT GGAGGGCCAAAAGACGTTCGAGAATAGATGCTACGAGGCCATGAATTGTG ACAGCATCCAGCAGGCCCTGACATGCCATTTGTCCTAAAAGCTGGGTGTC AACATGGGCCTGCAGCTCTGCAGCCAAGTCCTTGCGATGAGGTGTCAGCT CAATCAACTTCTCACATGCATCCTCCAGCAGTGCAAGCAGAGGCTCATAG TTCAAGGGGTCGCTCTTCAACCGAAAGTCCTCCAGCGGCCGCCGCTCCTT CACGCCATCCATCAGGTAGATCACGTCCAAAGTGCCGTCCTCTTTATTCA CAGCCTCCACTCTCGCCTCAAACAACGATCCTTGTGGGCCTCCAAAGCGG AGCTGCGCTACCACACCAGGCACAAAGTCCTCTGGCCCTTCCTGCTCTGC TGGCGTCATGGCCATTACCAGCCGATCCCAGAACATCTTTTCCATCGCCT CTCGCACCCGGCCCAGCTCAACAGCCAGCTCACCCTTCGCCAACGCTGAT AACGAGCTGGTACCCAATGGCTGCTTCTTTTCTTCAAGCTTGAAATCGGG ATTAAGAATGATTTCGTGGGCTAGGTGCTCGTTGCGGAGGAGGGCGGCCA GGGACTGGGGCACTTTCGGCAGTTGATCTGTGCCCGCTTCCTCTTGTCCT ACGATACTGCATGGGGTACTGGGCCCGCTTCTCTTGTTGTTAAGTCTGAC CTCAGCTTTGCCGTCGATTTTGCCCGTCGTCGGGCTTGCCGCCGAGGAAG AAGAAGGCGGATGAGGCATGCGCACACGGACATGCGGCAGGATAACCTTG ATCTCCCCCGGCATAAGCACTACAAAGGGCTCCATCGATTCCAAAGCCTC TTCCACGCGCCTGCAGTGCTTTTCTGTCGTATCCCGTCCCAAGACTTTGG CTATACCAACCCGAACCTTTTCTACACTCTGGCGTGCAGCGGCGATGAGC ACGTCTTCCTGGGAACGCTCCGCATCACGGAGGCAAGCATAAGCTTCTCC ATAAGATGACAGAAAAGATGCAGCCATCCCTCGAGCCTGCCGAGCTTGCA ACACCCGTAAAGATGCATTCATGAACGCCCTTGAAAAGTTAAAGGTGTTG AGACGGAGACGGAAGGTACCTAAGGCTCCTGCCTGACGCTGCTGCTGTCC CTCTTTCAAGCACTCTATAGCCTGAATCAGACCTACAGCCGACATCAGAG CCAGATTCGCTGCCACACACAACAGACGTGCCTCGAAATCTCCCAATGAT ACACTGCTATTATTGCCATCCTCGGCATAGCTGCTGACGATAACCTCCTC CGGATGGTGCTTGATCATGATGGCCGTCAAAAACTTGCGCGCCTGATGTT GCTGCGCTGCTTCCAGGGATCGAGGCGAGCCCCGGGCACCCCGCGAAACC ATGGGCGGGGCACTAAAGCCGGGACCGGATACAGCTGCCAACAAGCCTAC GATACTGCGGATAAGCTCTTTGCTTTGAATCTTGGTCAGAACGTCCTCGA AGCCCTTGCTTGACTGGAGGGCTAGCACTTGGGCTGCTTGTAGAAGTTGT GGTCGTTGCCTCCTCATTGCTGCGGCAGCCTTGTAAGCTGCTTGGAAACG TCGCCACCAGGCCTGCAGGACAATAGCGGCCAAACGTTGGTCTTGCTCGA GGGCTGCAGGAGGAAGGAGCATGGGCCGTTTGGGCGTCGAAGGAATTGCT GTGAAGGAAGAGGGTGCTTCCTCTGCTGCGTGCTGTTTGGGAGGTGTCGA CATGACTAAAGTGTCCCCTGTCGATAGACATACAAGAGAGAGAAGAGAAG TAAGCAAGGATCGTAGAGGTGGCGTAGTTAGTGTACTCGACTTGCGTTGT CATGCCAAGTGGCAGTATCACGCAGGCTGGGCGGTTGGGAAGAGCTCCCC CTACTGCTTTTACCTTACAAGAGGACATCTCCACGTCTTAAATGCATGTC CTTCCAACTGTCTTTAAACACGACCATCAAGCCCCTTGAGTTCCTCTTAC CTCGCTATTCCCAGGAGTGCTATCGATGCAGTGCTGAGTATCAAGCAAAA AGCCTTGCTTCCCTTGGACGAGGAGTGATTGGCTACGGGGAAATCCTGAC TGAGAAAATTTTGACCACACCCACAACTATGTCGAAGAGATTGATGAGGA TGGCAAGGATGACGCTCGCTATCGAGATCCTGTTTGCTTTGCAGAGGGGG AGAGGTGGGGAGTATTTATAGGCTGTTCTCTGGCAGCTCGGCATTGACGT TGGTAATTTGGTTCACTTGCTTACAAGGAGGTGCAATTGCTCCAGGATCG TGAGCACCTCCAGGATTTGGTCCCATCCCGCGTTGCACAGCTAGGACGAT CACTAGCCAAAAGATGCGTTTGGTTCAGATGGGGGAAATAGTGGTGACAT CTAAGCTTTTTAAAATACCAAATGGAGCCCCCATTTCAAGTCGAGGACTT TTCGGACTCCTCAGCGGAAGAGGACCATGAGGCCGTAGACGAGTTGTACG ACGAAAACGCGGACGAAGAGGATGAGAAATGGATTATCAAGCACTGGCGC CAAGGACAAGCCTTGCCAATTCAACAAAGAAGTGCAACGGCGGCACGCTC GACGGATGCCGTCCTGAATTGCCCGTGCTGCTTCACTACTGTGTGCATGG AATGCCAAAGGCATGCCATTTACAAGACACAATACCGGGCTATGTTTATT ATAAATTGCAGGGTTAAGACAAATGAAAATTTAAGCGATACGCGGAAGGA AGAGGAATACGCACGTGAGGAAGTCGAGGCCGAAACCACACCATTTACAC AATCAATACCACCAGCAGCACATGGAGAAGAAGGCACCCGCGACTCCGAC AAACAGCAACGTCAACATGATCAGCAGCAAAATAAGAAGGGAGTGCGCTG GAACGACATCCTTGACGGGGAAGCTCCAGTGCGTGCGGTGGAATGCGAGA CGTGTGGTACGGTAGTGGGTGTGCAGGATGAAGACGAGGTCACACATTTT TTTAATGTAATTGCTTCATGA back to topprotein sequence of NO10G02120.2 >NO10G02120.2-protein ID=NO10G02120.2-protein|Name=NO10G02120.2|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp MEPPFQVEDFSDSSAEEDHEAVDELYDENADEEDEKWIIKHWRQGQALPI QQRSATAARSTDAVLNCPCCFTTVCMECQRHAIYKTQYRAMFIINCRVKT NENLSDTRKEEEYAREEVEAETTPFTQSIPPAAHGEEGTRDSDKQQRQHD QQQNKKGVRWNDILDGEAPVRAVECETCGTVVGVQDEDEVTHFFNVIAS* back to topmRNA from alignment at chr10:583484..588220- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G02120.2 ID=NO10G02120.2|Name=NO10G02120.2|organism=Nannochloropsis oceanica|type=mRNA|length=4737bp|location=Sequence derived from alignment at chr10:583484..588220- (Nannochloropsis oceanica) ATGTCAAGCATGGATATTTATTTATTTGCTCAAACTGTGAACCACTAACT
CATGACACTTTGATTAGTTTCTGGTGAGAAATCTGATGAATTTTTCGTGA
CCTCCTTCCACATGACATTTTTGGCAGAGGAATTAAAAGACGCATTAGCT
CACCAGATAATCGTCTTCGCCAAAGTCAAAAAAGGAAACATTCAACGATT
TTGTGTATTTTCTTCAATCTCCTCTGCTACTTTCAGGGAGACACTTGCAT
GCTGCTGCTATTGCTCCTCGCGATTCCATCCCCTTCTTGGTTGGCCGCAT
CCTCTGCCGCGTCGTGCAGCAGAGCTGACGCTTCGGCGCGAAAAAGACGC
GAATACAGTTCGCCATGCACGGCAAGATTGTGCTCCAGGACACGGCGCAG
CCCATTACCGGTGGCCGCAAGCTGCACGCTAAAGGTCTGGAAGCCGAAGC
GCCTTACGAGTTCGCTAGCACCTGCAGCGTCGCCACGTGCGTGGAGGTTG
AGCACATCGGCCAGTCGCGCAAAAAGAAGGTTGTACAAGGGATTTTCCAA
GCTCCCGGCGTTTTGGAGCATGCCGCGCAACGTAGCTGCCTGCTCGTTGC
TTATGGCCGTCCCGGCGTCGGCGTGAATATGATGGGCAGACTGCATCACC
TCCTCAACTAAATGCGGAAGCGTGACCTCGCCGTCGTCCTGCAGTATGGT
GTACAGTCGCGTCTCTAATGCTAAAAGAAACTTTCTCACAGTACTGTATC
GGCACACAGGTAAATCAGGGCTAGGAGTGACCAGAAATTGACGCAATAGA
GAGGAGTAAACTGCCACGAGTGATAAGCGATCCAGCTCGTCACGGAACTC
AGCCATACGCCGCCCATCATGGAAGAGTGTCTCGGGCAGCTTGGCTTTCA
TGGGATTATCCAAGCGCACAGGCTTGCGGAGGAGGCACATTAAGGCGTCG
GCGAGTAGATATCGGTGGGCTTGCGTATTACCTTCGGCAATTAATGGAAG
CTGCGCGACACGCTCCGTGGAAGCAAGAACATCACGGAGCCAGGCCTGGG
TGTGTATGAGCTTCACCTCGCCCTCTTGCAGTCGCTCCGCAAACTTCTGC
CGCTCGTACACCACACCATGTTCGATCAGAAAAGGTCGAAGCATCTGCAT
GTGGGCATTTGCTATGTCCCGGCGCGTCTCATCGATGCGCTCGAAAATGG
TCTGAAACACGCCCGGGAGGAGCGCAACAAAAGCCGGGGTAGGCTTCGTG
CTACCGCCCTGGCCATCCTTCCCTTCATTCATGGCTGCCTGAGCCTGCAC
TTCAACCTCTGCGAACCAAGCCCTTGTCTCGGCAGCCCGGACAGGCGCCT
GGAGGGCCAAAAGACGTTCGAGAATAGATGCTACGAGGCCATGAATTGTG
ACAGCATCCAGCAGGCCCTGACATGCCATTTGTCCTAAAAGCTGGGTGTC
AACATGGGCCTGCAGCTCTGCAGCCAAGTCCTTGCGATGAGGTGTCAGCT
CAATCAACTTCTCACATGCATCCTCCAGCAGTGCAAGCAGAGGCTCATAG
TTCAAGGGGTCGCTCTTCAACCGAAAGTCCTCCAGCGGCCGCCGCTCCTT
CACGCCATCCATCAGGTAGATCACGTCCAAAGTGCCGTCCTCTTTATTCA
CAGCCTCCACTCTCGCCTCAAACAACGATCCTTGTGGGCCTCCAAAGCGG
AGCTGCGCTACCACACCAGGCACAAAGTCCTCTGGCCCTTCCTGCTCTGC
TGGCGTCATGGCCATTACCAGCCGATCCCAGAACATCTTTTCCATCGCCT
CTCGCACCCGGCCCAGCTCAACAGCCAGCTCACCCTTCGCCAACGCTGAT
AACGAGCTGGTACCCAATGGCTGCTTCTTTTCTTCAAGCTTGAAATCGGG
ATTAAGAATGATTTCGTGGGCTAGGTGCTCGTTGCGGAGGAGGGCGGCCA
GGGACTGGGGCACTTTCGGCAGTTGATCTGTGCCCGCTTCCTCTTGTCCT
ACGATACTGCATGGGGTACTGGGCCCGCTTCTCTTGTTGTTAAGTCTGAC
CTCAGCTTTGCCGTCGATTTTGCCCGTCGTCGGGCTTGCCGCCGAGGAAG
AAGAAGGCGGATGAGGCATGCGCACACGGACATGCGGCAGGATAACCTTG
ATCTCCCCCGGCATAAGCACTACAAAGGGCTCCATCGATTCCAAAGCCTC
TTCCACGCGCCTGCAGTGCTTTTCTGTCGTATCCCGTCCCAAGACTTTGG
CTATACCAACCCGAACCTTTTCTACACTCTGGCGTGCAGCGGCGATGAGC
ACGTCTTCCTGGGAACGCTCCGCATCACGGAGGCAAGCATAAGCTTCTCC
ATAAGATGACAGAAAAGATGCAGCCATCCCTCGAGCCTGCCGAGCTTGCA
ACACCCGTAAAGATGCATTCATGAACGCCCTTGAAAAGTTAAAGGTGTTG
AGACGGAGACGGAAGGTACCTAAGGCTCCTGCCTGACGCTGCTGCTGTCC
CTCTTTCAAGCACTCTATAGCCTGAATCAGACCTACAGCCGACATCAGAG
CCAGATTCGCTGCCACACACAACAGACGTGCCTCGAAATCTCCCAATGAT
ACACTGCTATTATTGCCATCCTCGGCATAGCTGCTGACGATAACCTCCTC
CGGATGGTGCTTGATCATGATGGCCGTCAAAAACTTGCGCGCCTGATGTT
GCTGCGCTGCTTCCAGGGATCGAGGCGAGCCCCGGGCACCCCGCGAAACC
ATGGGCGGGGCACTAAAGCCGGGACCGGATACAGCTGCCAACAAGCCTAC
GATACTGCGGATAAGCTCTTTGCTTTGAATCTTGGTCAGAACGTCCTCGA
AGCCCTTGCTTGACTGGAGGGCTAGCACTTGGGCTGCTTGTAGAAGTTGT
GGTCGTTGCCTCCTCATTGCTGCGGCAGCCTTGTAAGCTGCTTGGAAACG
TCGCCACCAGGCCTGCAGGACAATAGCGGCCAAACGTTGGTCTTGCTCGA
GGGCTGCAGGAGGAAGGAGCATGGGCCGTTTGGGCGTCGAAGGAATTGCT
GTGAAGGAAGAGGGTGCTTCCTCTGCTGCGTGCTGTTTGGGAGGTGTCGA
CATGACTAAAGTGTCCCCTGTCGATAGACATACAAGAGAGAGAAGAGAAG
TAAGCAAGGATCGTAGAGGTGGCGTAGTTAGTGTACTCGACTTGCGTTGT
CATGCCAAGTGGCAGTATCACGCAGGCTGGGCGGTTGGGAAGAGCTCCCC
CTACTGCTTTTACCTTACAAGAGGACATCTCCACGTCTTAAATGCATGTC
CTTCCAACTGTCTTTAAACACGACCATCAAGCCCCTTGAGTTCCTCTTAC
CTCGCTATTCCCAGGAGTGCTATCGATGCAGTGCTGAGTATCAAGCAAAA
AGCCTTGCTTCCCTTGGACGAGGAGTGATTGGCTACGGGGAAATCCTGAC
TGAGAAAATTTTGACCACACCCACAACTATGTCGAAGAGATTGATGAGGA
TGGCAAGGATGACGCTCGCTATCGAGATCCTGTTTGCTTTGCAGAGGGGG
AGAGGTGGGGAGTATTTATAGGCTGTTCTCTGGCAGCTCGGCATTGACGT
TGGTAATTTGGTTCACTTGCTTACAAGGAGGTGCAATTGCTCCAGGATCG
TGAGCACCTCCAGGATTTGGTCCCATCCCGCGTTGCACAGCTAGGACGAT
CACTAGCCAAAAGATGCGTTTGGTTCAGATGGGGGAAATAGTGGTGGTGT
GTACCAAGGACTTGGGTTGGAAGAATGGGCCAGAAGCAACGTCAACGGTC
GCTCAGGCTGCATCAGTCCAAGCCCGGCCTCTTATCTTGCCTTCCCTACA
CACACAGACATCTAAGCTTTTTAAAATACCAAATGGAGCCCCCATTTCAA
GTCGAGGACTTTTCGGACTCCTCAGCGGAAGGCAAGTAATCCCCACCGAT
CTAAACCCAGCATCATCCAGCCTCGTTCCCTCCTCACCCCCCAAAATAAA
TATCCTTCCTCCCGTGCATGATTTACACAGAGGACCATGAGGCCGTAGAC
GAGTTGTACGACGAAAACGCGGACGAAGAGGATGAGAAATGGATTATCAA
GCACTGGCGCCAAGGACAAGCCTTGCCAATTCAACAAAGAAGTGCAACGG
CGGCACGCTCGACGGATGCCGTCCTGAATTGCCCGTGCTGCTTCACTACT
GTGTGCATGGAATGCCAAAGGTGAGCTGTGGAACATTCTATATGCAATGA
GCATAATATTATTGCCAAACTTCTCTACAAAACCATGAGACTTGGCACAG
CTTGATCCTGCTGCCATCCACTTGGATTCCAAAATCTGACTTCCCTTACC
CTCCCCGCCCCCTTCTTCATCCCAAGGCATGCCATTTACAAGACACAATA
CCGGGCTATGTTTATTATAAATTGCAGGGTTAAGACAAATGAAAATTTAA
GCGATACGCGGAAGGAAGAGGAATACGCACGTGAGGAAGTCGAGGCCGAA
ACCACACCATTTACACAATCAATACCACCAGCAGCACATGGAGAAGAAGG
CACCCGCGACTCCGACAAACAGCAACGTCAACATGATCAGCAGCAAAATA
AGAAGGGAGTGCGCTGGAACGACATCCTTGACGGGGAAGCTCCAGTGCGT
GCGGTGGAATGCGAGACGTGTGGTACGGTAGTGGGTGTGCAGGATGAAGA
CGAGGTCACACATTTTTTTAATGTAATTGCTTCATGA back to topCoding sequence (CDS) from alignment at chr10:583484..588220- >NO10G02120.2 ID=NO10G02120.2|Name=NO10G02120.2|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at chr10:583484..588220- (Nannochloropsis oceanica) ATGGAGCCCCCATTTCAAGTCGAGGACTTTTCGGACTCCTCAGCGGAAGA GGACCATGAGGCCGTAGACGAGTTGTACGACGAAAACGCGGACGAAGAGG ATGAGAAATGGATTATCAAGCACTGGCGCCAAGGACAAGCCTTGCCAATT CAACAAAGAAGTGCAACGGCGGCACGCTCGACGGATGCCGTCCTGAATTG CCCGTGCTGCTTCACTACTGTGTGCATGGAATGCCAAAGGCATGCCATTT ACAAGACACAATACCGGGCTATGTTTATTATAAATTGCAGGGTTAAGACA AATGAAAATTTAAGCGATACGCGGAAGGAAGAGGAATACGCACGTGAGGA AGTCGAGGCCGAAACCACACCATTTACACAATCAATACCACCAGCAGCAC ATGGAGAAGAAGGCACCCGCGACTCCGACAAACAGCAACGTCAACATGAT CAGCAGCAAAATAAGAAGGGAGTGCGCTGGAACGACATCCTTGACGGGGA AGCTCCAGTGCGTGCGGTGGAATGCGAGACGTGTGGTACGGTAGTGGGTG TGCAGGATGAAGACGAGGTCACACATTTTTTTAATGTAATTGCTTCATGA back to top
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