NO10G01900.1, NO10G01900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01900.1
Unique NameNO10G01900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1144
Alignment locationchr10:529282..530721 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:529282..530721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01900.1 vs.
Match: EWM25411.1 (N-acetylglucosaminyl phosphatidylinositol deacetylase [Nannochloropsis gaditana])

HSP 1 Score: 292.4 bits (747), Expect = 1.700e-75
Identity = 145/270 (53.70%), Postives = 185/270 (68.52%), Query Frame = 0 
Query:   14 ASSTLPPSAFKAHPPSQQEGR----PRALFIIAHPDDETMFFSPTIAHYRRQGSAMSVLCVSTGDYYGQGSVRGQELEEGCRLLGIPPQRLTLLDDKDLQDGPDHGWPEPLLCSLVREAVTRDDIDEVVTFDVGGVSGHPNHVALARAVSSLVRQGGDGTRLPPAVKVWTLETTSVIRKYIGPADILVSIFACLWVSLCGSLGRRTCATDHGGRRTTSSTTGFRLCLNDSPGLTYKAMLAHASQFVWYRRLFIIFSRYTYINTLHEEGTG 280
            A S   P+     P   +EG      R L ++AHPDDETMFFSPTI+HYRR G + S+LC+STG++YGQG VR  EL + CRLLG+P ++LT++D + +QD P + WPE  LC ++ +AV R+D+ EVVTFD  GVSGHPNHVAL+RAV  LV        +P  VKVW LE+T++ RKYIGP DIL  I   +W+ +  +  R+  +   G R + S    F LCLND P LTY+AM+AHASQFVWYRRLF+IFSRYTY+NTL E G G
Sbjct:   64 ARSRGDPTKGSKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAG-GWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTLWEAGEG 332
The following BLAST results are available for this feature:
BLAST of NO10G01900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25411.11.700e-7553.70N-acetylglucosaminyl phosphatidylinositol deacetyl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01900NO10G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01900.1NO10G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01900.1.cds1NO10G01900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01900.1.cds2NO10G01900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01900.1.cds3NO10G01900.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01900.1.cds4NO10G01900.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01900.1 ID=NO10G01900.1|Name=NO10G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1144bp
CAGACACAGACAATGTCGATTTCACGAAAGGAGATGCCGGCGCCTCCTGC
TGCTTAGAGCCTTCAAGAAAAGAAGCATGTCAGGGCACCAGCATCCACTT
GTCACAGTCTCTGCAGCTGGGGACGTTTAGACAACCCCCTCTCCTTGTTG
CCTCCATCTGTCCATACCGCGCCATTTCAACCACTGACGACCCACCACCA
ATTTCTACCAGACACAGACAATGTCGATTTCACGAAAGGAGATGCCGGCG
CCTCCTGCTGCTTCCTCAACGTTGCCGCCGTCTGCGTTTAAAGCCCATCC
TCCTTCACAGCAAGAAGGTCGGCCACGGGCGCTCTTCATAATAGCCCACC
CTGACGACGAGACCATGTTTTTTTCTCCAACGATTGCCCATTATCGGCGC
CAAGGCTCGGCTATGTCGGTGCTGTGCGTCTCTACCGGTGACTACTACGG
ACAAGGCTCTGTGCGTGGTCAGGAGCTGGAGGAAGGATGCCGCCTGCTAG
GCATCCCTCCACAGAGATTGACCCTGCTCGACGACAAGGACCTTCAGGAT
GGCCCCGATCATGGCTGGCCAGAGCCGCTTTTGTGTTCCCTCGTCCGCGA
GGCCGTGACTCGCGACGATATCGACGAGGTCGTGACGTTTGACGTGGGCG
GCGTATCTGGCCATCCAAATCACGTAGCTCTCGCACGCGCGGTTAGCAGT
CTTGTCAGACAAGGAGGAGACGGAACCAGGTTGCCGCCTGCCGTAAAAGT
TTGGACATTGGAGACAACCAGTGTCATTCGAAAATACATTGGGCCTGCTG
ACATCCTGGTGTCAATCTTTGCATGCCTGTGGGTAAGTCTGTGTGGATCA
CTGGGTCGAAGAACGTGTGCAACGGATCATGGGGGGCGTAGGACCACCAG
CAGCACAACAGGTTTTCGTCTTTGCCTCAACGACAGCCCAGGCCTGACTT
ACAAGGCGATGCTGGCGCATGCGAGTCAGTTTGTATGGTACCGGCGTCTC
TTCATCATATTTTCCCGATACACCTACATAAATACGCTGCATGAGGAAGG
CACTGGCGCAAATGGGAAGGGGGTGGGGGTCCAATTTGGACATGTGGAAG
GCATAAGAGTTAAGAAAGCATAATTAATATTTGGAATAAGAGAC
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protein sequence of NO10G01900.1

>NO10G01900.1-protein ID=NO10G01900.1-protein|Name=NO10G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MSISRKEMPAPPAASSTLPPSAFKAHPPSQQEGRPRALFIIAHPDDETMF
FSPTIAHYRRQGSAMSVLCVSTGDYYGQGSVRGQELEEGCRLLGIPPQRL
TLLDDKDLQDGPDHGWPEPLLCSLVREAVTRDDIDEVVTFDVGGVSGHPN
HVALARAVSSLVRQGGDGTRLPPAVKVWTLETTSVIRKYIGPADILVSIF
ACLWVSLCGSLGRRTCATDHGGRRTTSSTTGFRLCLNDSPGLTYKAMLAH
ASQFVWYRRLFIIFSRYTYINTLHEEGTGANGKGVGVQFGHVEGIRVKKA
*
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mRNA from alignment at chr10:529282..530721+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01900.1 ID=NO10G01900.1|Name=NO10G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp|location=Sequence derived from alignment at chr10:529282..530721+ (Nannochloropsis oceanica)
CAGACACAGACAATGTCGATTTCACGAAAGGAGATGCCGGCGCCTCCTGC
TGCTTAGAGCCTTCAAGAAAAGAAGCATGTCAGGGCACCAGCATCCACTT
GTCACAGTCTCTGCAGCTGGGGACGTTTAGACAACCCCCTCTCCTTGTTG
CCTCCATCTGTCCATACCGCGCCATTTCAACCACTGACGACCCACCACCA
ATTTCTACCAGACACAGACAATGTCGATTTCACGAAAGGAGATGCCGGCG
CCTCCTGCTGCTTCCTCAACGTTGCCGCCGTCTGCGTTTAAAGCCCATCC
TCCTTCACAGCAAGAAGGTCGGCCACGGGCGCTCTTCATAATAGCCCACC
CTGACGACGAGACCATGTTTTTTTCTCCAACGATTGCCCATTATCGGCGC
CAAGGCTCGGCTATGTCGGTGCTGTGCGTCTCTACCGGTAATGCAGGGAA
GAGGAGGTGGACTGTTCGTTGTGCATTGCTCATATCGTCTTATGCCGGCA
TTTTACTCCCTCACCCGCATTCTGCGCCACAGGTGACTACTACGGACAAG
GCTCTGTGCGTGGTCAGGAGCTGGAGGAAGGATGCCGCCTGCTAGGCATC
CCTCCACAGAGATTGACCCTGCTCGACGACAAGGACCTTCAGGTAAGTAT
GTCGACTGCACACACTTGTGCCTTTCGACACAGTTGGTTCCAAGAGGGCA
AGAGAATTTGATTTTGTATGAGTTATGTCATCAATTTGACATACAATTTG
ACAGGATGGCCCCGATCATGGCTGGCCAGAGCCGCTTTTGTGTTCCCTCG
TCCGCGAGGCCGTGACTCGCGACGATATCGACGAGGTCAGTCCGGATAAT
ATACGCTTGTATGAGATTCTGCCAATTCATTTCGCTATCATACTCAATTA
AAAGTCACTTTCTCCCAAGCCCAGGTCGTGACGTTTGACGTGGGCGGCGT
ATCTGGCCATCCAAATCACGTAGCTCTCGCACGCGCGGTTAGCAGTCTTG
TCAGACAAGGAGGAGACGGAACCAGGTTGCCGCCTGCCGTAAAAGTTTGG
ACATTGGAGACAACCAGTGTCATTCGAAAATACATTGGGCCTGCTGACAT
CCTGGTGTCAATCTTTGCATGCCTGTGGGTAAGTCTGTGTGGATCACTGG
GTCGAAGAACGTGTGCAACGGATCATGGGGGGCGTAGGACCACCAGCAGC
ACAACAGGTTTTCGTCTTTGCCTCAACGACAGCCCAGGCCTGACTTACAA
GGCGATGCTGGCGCATGCGAGTCAGTTTGTATGGTACCGGCGTCTCTTCA
TCATATTTTCCCGATACACCTACATAAATACGCTGCATGAGGAAGGCACT
GGCGCAAATGGGAAGGGGGTGGGGGTCCAATTTGGACATGTGGAAGGCAT
AAGAGTTAAGAAAGCATAATTAATATTTGGAATAAGAGAC
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Coding sequence (CDS) from alignment at chr10:529282..530721+

>NO10G01900.1 ID=NO10G01900.1|Name=NO10G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at chr10:529282..530721+ (Nannochloropsis oceanica)
ATGTCGATTTCACGAAAGGAGATGCCGGCGCCTCCTGCTGCTTCCTCAAC
GTTGCCGCCGTCTGCGTTTAAAGCCCATCCTCCTTCACAGCAAGAAGGTC
GGCCACGGGCGCTCTTCATAATAGCCCACCCTGACGACGAGACCATGTTT
TTTTCTCCAACGATTGCCCATTATCGGCGCCAAGGCTCGGCTATGTCGGT
GCTGTGCGTCTCTACCGGTGACTACTACGGACAAGGCTCTGTGCGTGGTC
AGGAGCTGGAGGAAGGATGCCGCCTGCTAGGCATCCCTCCACAGAGATTG
ACCCTGCTCGACGACAAGGACCTTCAGGATGGCCCCGATCATGGCTGGCC
AGAGCCGCTTTTGTGTTCCCTCGTCCGCGAGGCCGTGACTCGCGACGATA
TCGACGAGGTCGTGACGTTTGACGTGGGCGGCGTATCTGGCCATCCAAAT
CACGTAGCTCTCGCACGCGCGGTTAGCAGTCTTGTCAGACAAGGAGGAGA
CGGAACCAGGTTGCCGCCTGCCGTAAAAGTTTGGACATTGGAGACAACCA
GTGTCATTCGAAAATACATTGGGCCTGCTGACATCCTGGTGTCAATCTTT
GCATGCCTGTGGGTAAGTCTGTGTGGATCACTGGGTCGAAGAACGTGTGC
AACGGATCATGGGGGGCGTAGGACCACCAGCAGCACAACAGGTTTTCGTC
TTTGCCTCAACGACAGCCCAGGCCTGACTTACAAGGCGATGCTGGCGCAT
GCGAGTCAGTTTGTATGGTACCGGCGTCTCTTCATCATATTTTCCCGATA
CACCTACATAAATACGCTGCATGAGGAAGGCACTGGCGCAAATGGGAAGG
GGGTGGGGGTCCAATTTGGACATGTGGAAGGCATAAGAGTTAAGAAAGCA
TAA
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Synonyms
Publications