NO10G01440.1, NO10G01440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01440.1
Unique NameNO10G01440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2321
Alignment locationchr10:421608..424165 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:421608..424165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO10G01440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01440NO10G01440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01440.1NO10G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01440.1.cds1NO10G01440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01440.1.cds2NO10G01440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01440.1 ID=NO10G01440.1|Name=NO10G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2321bp
GGGGAGGGGAGAGGCAGATAAAGGTGGCGAAAAAGACCGAGTAGTTTATA
TTTTGGAAAGAGGGCTGTATTTAATACGGCAGAGAAAATAATGCAGAGAA
AGAGGAATGCGAGAAGTGAGTGAGTGTCAAGGAAAGCGTATCACAAAGAA
ACCCCTGCCAGGAAACGTCAGCTGAAAATAGGCCGTATTTGATATTTCTC
TTTTTTGCTTGTCCTACAAAAAGTGCTAATGCGTTTGCCTTTGTGACCTC
ATCGGTCTCTCCCAACATCACATCCAAGCTGACATCATTTTATTTCCGAT
GGTCAAAGCCCATCTTTAAGCCGAAAATTCATTGCTTGGGACGCTGCCTA
CTCACTGTACTTGTTGCGAAAGTCAGTCAGGTCTGCAGAGGACAAGCTCG
TCTCTCTATATGTTGCTGGCCTCTTACTTCTTTGCCATCTTTTCCAAACC
CAAATGTGTCTCGGAGTCACTCACCAATCGCCACTTTCCCTCCCCGTCCT
CCTCCGCGCTCAGAGGCACCCGGTCCAATAACTGCACAACCCGATACATC
GACCCATCAAACTCGACGTCACAAATTGGATCAACCCTCACACTGTTCTC
CCCCCTTGCAGCCGCGGACCGGGCCGCCTGTGCAGCTACCTCCCCAGCGT
CCTCTTCTTCCTCGTCCTCGCTGTCGTATTCGTCGTCACTGTCAACATCA
TCCTCGTCCACCACATCATCATCATCGAACCAATCCGGATCCCCCGCGAT
GGTCAAAAATCCCGCAGTATGGAGAATTTCATAACCCTTATTCGTAAAAT
AATCGTCCAGCTGGTAAAACATCTTCTCCGCTAATTCATCCGAAGGGTCA
ATGGGCCGCCCCCCCGAGTCCATCAAAACCATCGGGCTATCCACCGGCGT
CCCCAAGCAGTACCGCTTACCGTCCTGCTTAAGGAATGCCAGCATCGTTG
TATTGATGCTCCGTCCTGATGCATCTTCCATCAAGACGTACTCGGGCTTC
TTTCCTGCCAAGGCCTCAACCACGGGCTCGGCTGTCGCAGCCATGACTGC
AGCCGAGGCACGGAGGGGCGATACGGCACTGGCAGGGGACGGGACCAGGA
AACCACTGACGAGGCTGCAGGACAGCAAACTGATCAACATATTTAATTTC
ATCGTCAGCAGGTATATAGCTGCGCAGAACTGGGGCTGGGTGGCTCTTGT
GGCGTATGGAATGCGGGAGGAATGGGAGGAGCAGTCGAGTATCCTTCAAA
ATATGTGGCGAGGCGTGCTTTAGTGGCAATTGGGACGCCTGTGCCATGCA
TGCGAGGAACAGGCGAAGAGCGTGAACATGAGAATGGACTCTGAACGAGG
TAAGATGGCAGCAGATAGCATGGTGGTGGCTAAGTAAGAGGGACGAAGCA
AGGAGTCGGAATTGCAAGCACCCTGGCGCTTGCGCTCGCCTTCAACCCGC
GATCTGAGCAAGAGTCGTTACGATGCCTCAATTTCACCACTGAGACAACA
ACTTTTCAGTACAGACAGCACATCTTCAACAGGCAACTACGTACAGGATC
AATAGTAATTGTACCGCCTTGTTGCAGGACCTAGAAGATGGAAAGGAGCT
TTTGGCAAAAGGAAGAAAGGCATATTTTTGATGCTTATGGAAGGGAGCTG
GCCGAGGCCAGGGCCCAGGTCCTAGCTGCTTCCGCCTGCGCCGCTTCCTT
CGCGGCAGCATCTTCGGCCTGCGACGATGTTGACTATGACCCCGGCAACG
CAGACGCCGACTGGGCAGGCATCGTGAAAAAGCGAGGACGAAAAGTCCAT
TTTCCTCTGACGCAAAAATCTGTCTTGATCGCACACCATTTAGCGGGGTT
AACAGATGCCTCGTCCTCATCCTCGTCGTCGTCCTTGACCTCATCCCGAC
AGCGGGCACCCGCATCCAGAGGCCATAACACCACCTCTTTCGTAATCGGC
GGGGTCGACGCTCCAGTGCCATCTAATTGGGCAACGAGCTACCAGGCTCA
AGTTGAGGGTACGCCCACGCCAGAAGAAATGATGGATCCCCTACGGCTGC
GCTCCAAAAAGAAGGCAGGCGTGCAGCAGCAGGAGCTACAGGAGCTGCAG
CGGGGTGGAACGGAGATGGAGTCGCATGCGACTACATCAGCGCGTCAAGG
AGGAGATGAGGAAGTAAATGACCGCAACACTCTAATTGGGTACCGGGCTC
CACCCATATTTCGAGGCAAAGCGTCGTTCTTGGTGGGGATTGGCAAAAAG
CTGCATAAAGAGCAGAGTTTAATAGAAAGGAAGAATCATTGAAAGCTAAA
AACAACGATGAAGTATAAGCA
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protein sequence of NO10G01440.1

>NO10G01440.1-protein ID=NO10G01440.1-protein|Name=NO10G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MERSFWQKEERHIFDAYGRELAEARAQVLAASACAASFAAASSACDDVDY
DPGNADADWAGIVKKRGRKVHFPLTQKSVLIAHHLAGLTDASSSSSSSSL
TSSRQRAPASRGHNTTSFVIGGVDAPVPSNWATSYQAQVEGTPTPEEMMD
PLRLRSKKKAGVQQQELQELQRGGTEMESHATTSARQGGDEEVNDRNTLI
GYRAPPIFRGKASFLVGIGKKLHKEQSLIERKNH*
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mRNA from alignment at chr10:421608..424165+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01440.1 ID=NO10G01440.1|Name=NO10G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2558bp|location=Sequence derived from alignment at chr10:421608..424165+ (Nannochloropsis oceanica)
GGGGAGGGGAGAGGCAGATAAAGGTGGCGAAAAAGACCGAGTAGTTTATA
TTTTGGAAAGAGGGCTGTATTTAATACGGCAGAGAAAATAATGCAGAGAA
AGAGGAATGCGAGAAGTGAGTGAGTGTCAAGGAAAGCGTATCACAAAGAA
ACCCCTGCCAGGAAACGTCAGCTGAAAATAGGCCGTATTTGATATTTCTC
TTTTTTGCTTGTCCTACAAAAAGTGCTAATGCGTTTGCCTTTGTGACCTC
ATCGGTCTCTCCCAACATCACATCCAAGCTGACATCATTTTATTTCCGAT
GGTCAAAGCCCATCTTTAAGCCGAAAATTCATTGCTTGGGACGCTGCCTA
CTCACTGTACTTGTTGCGAAAGTCAGTCAGGTCTGCAGAGGACAAGCTCG
TCTCTCTATATGTTGCTGGCCTCTTACTTCTTTGCCATCTTTTCCAAACC
CAAATGTGTCTCGGAGTCACTCACCAATCGCCACTTTCCCTCCCCGTCCT
CCTCCGCGCTCAGAGGCACCCGGTCCAATAACTGCACAACCCGATACATC
GACCCATCAAACTCGACGTCACAAATTGGATCAACCCTCACACTGTTCTC
CCCCCTTGCAGCCGCGGACCGGGCCGCCTGTGCAGCTACCTCCCCAGCGT
CCTCTTCTTCCTCGTCCTCGCTGTCGTATTCGTCGTCACTGTCAACATCA
TCCTCGTCCACCACATCATCATCATCGAACCAATCCGGATCCCCCGCGAT
GGTCAAAAATCCCGCAGTATGGAGAATTTCATAACCCTTATTCGTAAAAT
AATCGTCCAGCTGGTAAAACATCTTCTCCGCTAATTCATCCGAAGGGTCA
ATGGGCCGCCCCCCCGAGTCCATCAAAACCATCGGGCTATCCACCGGCGT
CCCCAAGCAGTACCGCTTACCGTCCTGCTTAAGGAATGCCAGCATCGTTG
TATTGATGCTCCGTCCTGATGCATCTTCCATCAAGACGTACTCGGGCTTC
TTTCCTGCCAAGGCCTCAACCACGGGCTCGGCTGTCGCAGCCATGACTGC
AGCCGAGGCACGGAGGGGCGATACGGCACTGGCAGGGGACGGGACCAGGA
AACCACTGACGAGGCTGCAGGACAGCAAACTGATCAACATATTTAATTTC
ATCGTCAGCAGGTATATAGCTGCGCAGAACTGGGGCTGGGTGGCTCTTGT
GGCGTATGGAATGCGGGAGGAATGGGAGGAGCAGTCGAGTATCCTTCAAA
ATATGTGGCGAGGCGTGCTTTAGTGGCAATTGGGACGCCTGTGCCATGCA
TGCGAGGAACAGGCGAAGAGCGTGAACATGAGAATGGACTCTGAACGAGG
TAAGATGGCAGCAGATAGCATGGTGGTGGCTAAGTAAGAGGGACGAAGCA
AGGAGTCGGAATTGCAAGCACCCTGGCGCTTGCGCTCGCCTTCAACCCGC
GATCTGAGCAAGAGTCGTTACGATGCCTCAATTTCACCACTGAGACAACA
ACTTTTCAGTACAGACAGCACATCTTCAACAGGCAACTACGTACAGGATC
AATAGTAATTGTACCGCCTTGTTGCAGGACCTAGAAGATGGAAAGGGTAC
GTTTAACTCATATATTTTGTTTGAGGGAGTATTAGTTCTAGTTCTTTTTT
TCTGCCGTCTGCCGTTGCTACACTCCTATAGAACTATCGCATGCAACCTG
ACGTCCTCTAGGACTTGCATACGAGTACTTTTTTGGGGGGAGTATTAAGC
TTATCTGCCAAATTGTGTGTGGTAGGCCTGTCACGCTGGTACCTCCTTTC
CTTGATTTTTATTCCCTTTCCGAAATCAATTAGAGCTTTTGGCAAAAGGA
AGAAAGGCATATTTTTGATGCTTATGGAAGGGAGCTGGCCGAGGCCAGGG
CCCAGGTCCTAGCTGCTTCCGCCTGCGCCGCTTCCTTCGCGGCAGCATCT
TCGGCCTGCGACGATGTTGACTATGACCCCGGCAACGCAGACGCCGACTG
GGCAGGCATCGTGAAAAAGCGAGGACGAAAAGTCCATTTTCCTCTGACGC
AAAAATCTGTCTTGATCGCACACCATTTAGCGGGGTTAACAGATGCCTCG
TCCTCATCCTCGTCGTCGTCCTTGACCTCATCCCGACAGCGGGCACCCGC
ATCCAGAGGCCATAACACCACCTCTTTCGTAATCGGCGGGGTCGACGCTC
CAGTGCCATCTAATTGGGCAACGAGCTACCAGGCTCAAGTTGAGGGTACG
CCCACGCCAGAAGAAATGATGGATCCCCTACGGCTGCGCTCCAAAAAGAA
GGCAGGCGTGCAGCAGCAGGAGCTACAGGAGCTGCAGCGGGGTGGAACGG
AGATGGAGTCGCATGCGACTACATCAGCGCGTCAAGGAGGAGATGAGGAA
GTAAATGACCGCAACACTCTAATTGGGTACCGGGCTCCACCCATATTTCG
AGGCAAAGCGTCGTTCTTGGTGGGGATTGGCAAAAAGCTGCATAAAGAGC
AGAGTTTAATAGAAAGGAAGAATCATTGAAAGCTAAAAACAACGATGAAG
TATAAGCA
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Coding sequence (CDS) from alignment at chr10:421608..424165+

>NO10G01440.1 ID=NO10G01440.1|Name=NO10G01440.1|organism=Nannochloropsis oceanica|type=CDS|length=705bp|location=Sequence derived from alignment at chr10:421608..424165+ (Nannochloropsis oceanica)
ATGGAAAGGAGCTTTTGGCAAAAGGAAGAAAGGCATATTTTTGATGCTTA
TGGAAGGGAGCTGGCCGAGGCCAGGGCCCAGGTCCTAGCTGCTTCCGCCT
GCGCCGCTTCCTTCGCGGCAGCATCTTCGGCCTGCGACGATGTTGACTAT
GACCCCGGCAACGCAGACGCCGACTGGGCAGGCATCGTGAAAAAGCGAGG
ACGAAAAGTCCATTTTCCTCTGACGCAAAAATCTGTCTTGATCGCACACC
ATTTAGCGGGGTTAACAGATGCCTCGTCCTCATCCTCGTCGTCGTCCTTG
ACCTCATCCCGACAGCGGGCACCCGCATCCAGAGGCCATAACACCACCTC
TTTCGTAATCGGCGGGGTCGACGCTCCAGTGCCATCTAATTGGGCAACGA
GCTACCAGGCTCAAGTTGAGGGTACGCCCACGCCAGAAGAAATGATGGAT
CCCCTACGGCTGCGCTCCAAAAAGAAGGCAGGCGTGCAGCAGCAGGAGCT
ACAGGAGCTGCAGCGGGGTGGAACGGAGATGGAGTCGCATGCGACTACAT
CAGCGCGTCAAGGAGGAGATGAGGAAGTAAATGACCGCAACACTCTAATT
GGGTACCGGGCTCCACCCATATTTCGAGGCAAAGCGTCGTTCTTGGTGGG
GATTGGCAAAAAGCTGCATAAAGAGCAGAGTTTAATAGAAAGGAAGAATC
ATTGA
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Synonyms
Publications