NO10G01430.1, NO10G01430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01430.1
Unique NameNO10G01430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1101
Alignment locationchr10:420480..421580 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:420480..421580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01430.1 vs.
Match: GAX15529.1 (hypothetical protein FisN_6Hh174 [Fistulifera solaris])

HSP 1 Score: 169.1 bits (427), Expect = 2.600e-38
Identity = 112/322 (34.78%), Postives = 163/322 (50.62%), Query Frame = 0 
Query:   95 SELPDSFDDALIIAVEA----AQEAFAAGRSRVRIDFDTTAGDLTYTTLKNS---------------------------LPLALAFAQYLGKEIMEEDKIVMDEE----------GKKVGYEGNKLVVIFPDTGSAVWAQQEW-KVGKFGKSAKVPPSVRCAAFPNGQ--VDLTTDAAFLIVCPKASEAQATFDLLTSLPPDSK----VVLMNPELINAEVVGFGMAGRRIRDEVENKFERVYYLKTLSWGALTRRWPAGFSIWLEDEGVEEGYRLLKTVGRFPSLDDMEDIKDAADQQSGE--NRGVLSELARFFDSFRKM 367
            +ELPDS +DA + A EA    A++  + GR RV  DFDT+ GD TYT LK+S                           + +  A A+    E  EE     +E+           K   +EG K  + FPD G+A  A+++W   G    +AKVPP V  ++    Q   D++ D      CPKASE+ +   +L     +S      V +NP L++  V GFGMAGR +R+ + +  +  YYL+TL+WGALTR++P  FS+W EDEG + GYRL+KT+ R PS  ++EDI D  +    E  + G L +L  F     ++
Sbjct:   41 TELPDSLEDAAVRAAEASALFAEQMGSMGRCRV--DFDTSVGDETYTMLKSSTEFMQNYVSALCYSMIPGLQEQRQAEMMRVVEARAELKAMENAEEANAEREEQLVQIIAANGRDKNAKWEGPKARIYFPDEGNAALARRDWLGSGPKPGAAKVPPCVEFSSCGGVQRVNDVSNDMLVFFFCPKASESDSVEKILQRSEAESSCLKLTVFVNPSLVDMGVTGFGMAGRMLRERLIDPLQTTYYLRTLAWGALTRQYPEAFSVWQEDEGADGGYRLIKTMDRLPSNPEVEDIYDIENGAKSERSSGGFLDQLGDFVQGMTRL 360
The following BLAST results are available for this feature:
BLAST of NO10G01430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAX15529.12.600e-3834.78hypothetical protein FisN_6Hh174 [Fistulifera sola... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01430NO10G01430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01430.1NO10G01430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01430.1.cds1NO10G01430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01430.1 ID=NO10G01430.1|Name=NO10G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1101bp
ATGCCAGTCATCGCCGTCGCCTCCGCTTCCACCTGCCTGCTCCAACTGCT
ACTTCTACAACTGCTAGTGCTGCTACCATGGCAGATGCAAGCCTTCATGA
TACCGTCCTTAATGACCCAGACATCTTTATCGCTCTTTCGCAACACTATC
ACTGGGGCAAGAAGACCAAGCTCCCCCCTCTTTTCTCAGACTGAAAATGA
CGGGGGGAAAGGGGAAGAATGGTGGAGACCCAAGCCTGAATGGCGGGACG
ACGCCCAACTTGACATCCCTGGCCTGGCATCCTCCGAGCTCCCCGACAGC
TTTGATGATGCGCTGATAATTGCGGTAGAAGCGGCCCAAGAGGCGTTCGC
CGCGGGCCGCAGTCGTGTCCGCATTGATTTTGATACCACAGCAGGGGACC
TGACCTACACTACGCTCAAAAATTCTCTGCCCTTGGCGTTAGCCTTCGCG
CAATATCTCGGCAAGGAAATTATGGAAGAGGACAAGATTGTGATGGACGA
GGAGGGGAAGAAAGTTGGCTATGAAGGGAATAAGCTCGTGGTCATTTTCC
CAGACACAGGCTCGGCCGTGTGGGCGCAGCAAGAATGGAAAGTAGGGAAA
TTTGGCAAGTCCGCCAAAGTGCCACCATCCGTGCGTTGCGCTGCCTTTCC
CAATGGACAGGTCGATCTGACCACTGATGCTGCTTTCCTTATTGTTTGTC
CAAAGGCGTCTGAAGCACAGGCCACGTTTGACTTGCTTACCTCATTGCCG
CCTGATTCGAAGGTAGTATTAATGAACCCGGAATTGATCAATGCCGAAGT
GGTGGGCTTTGGGATGGCGGGGCGTCGGATCCGTGATGAAGTGGAGAATA
AATTTGAGAGGGTATACTATTTGAAGACGTTAAGTTGGGGGGCCTTGACT
CGACGGTGGCCCGCGGGCTTTTCCATCTGGTTGGAGGACGAGGGGGTTGA
GGAGGGGTACAGGCTTCTGAAAACTGTAGGGAGGTTTCCGTCTTTGGATG
ACATGGAAGATATCAAAGATGCGGCGGATCAGCAAAGTGGGGAAAATAGG
GGGGTCTTGTCTGAGCTGGCACGGTTTTTTGATTCCTTTCGGAAGATGTA
A
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protein sequence of NO10G01430.1

>NO10G01430.1-protein ID=NO10G01430.1-protein|Name=NO10G01430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MPVIAVASASTCLLQLLLLQLLVLLPWQMQAFMIPSLMTQTSLSLFRNTI
TGARRPSSPLFSQTENDGGKGEEWWRPKPEWRDDAQLDIPGLASSELPDS
FDDALIIAVEAAQEAFAAGRSRVRIDFDTTAGDLTYTTLKNSLPLALAFA
QYLGKEIMEEDKIVMDEEGKKVGYEGNKLVVIFPDTGSAVWAQQEWKVGK
FGKSAKVPPSVRCAAFPNGQVDLTTDAAFLIVCPKASEAQATFDLLTSLP
PDSKVVLMNPELINAEVVGFGMAGRRIRDEVENKFERVYYLKTLSWGALT
RRWPAGFSIWLEDEGVEEGYRLLKTVGRFPSLDDMEDIKDAADQQSGENR
GVLSELARFFDSFRKM*
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mRNA from alignment at chr10:420480..421580+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01430.1 ID=NO10G01430.1|Name=NO10G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1101bp|location=Sequence derived from alignment at chr10:420480..421580+ (Nannochloropsis oceanica)
ATGCCAGTCATCGCCGTCGCCTCCGCTTCCACCTGCCTGCTCCAACTGCT
ACTTCTACAACTGCTAGTGCTGCTACCATGGCAGATGCAAGCCTTCATGA
TACCGTCCTTAATGACCCAGACATCTTTATCGCTCTTTCGCAACACTATC
ACTGGGGCAAGAAGACCAAGCTCCCCCCTCTTTTCTCAGACTGAAAATGA
CGGGGGGAAAGGGGAAGAATGGTGGAGACCCAAGCCTGAATGGCGGGACG
ACGCCCAACTTGACATCCCTGGCCTGGCATCCTCCGAGCTCCCCGACAGC
TTTGATGATGCGCTGATAATTGCGGTAGAAGCGGCCCAAGAGGCGTTCGC
CGCGGGCCGCAGTCGTGTCCGCATTGATTTTGATACCACAGCAGGGGACC
TGACCTACACTACGCTCAAAAATTCTCTGCCCTTGGCGTTAGCCTTCGCG
CAATATCTCGGCAAGGAAATTATGGAAGAGGACAAGATTGTGATGGACGA
GGAGGGGAAGAAAGTTGGCTATGAAGGGAATAAGCTCGTGGTCATTTTCC
CAGACACAGGCTCGGCCGTGTGGGCGCAGCAAGAATGGAAAGTAGGGAAA
TTTGGCAAGTCCGCCAAAGTGCCACCATCCGTGCGTTGCGCTGCCTTTCC
CAATGGACAGGTCGATCTGACCACTGATGCTGCTTTCCTTATTGTTTGTC
CAAAGGCGTCTGAAGCACAGGCCACGTTTGACTTGCTTACCTCATTGCCG
CCTGATTCGAAGGTAGTATTAATGAACCCGGAATTGATCAATGCCGAAGT
GGTGGGCTTTGGGATGGCGGGGCGTCGGATCCGTGATGAAGTGGAGAATA
AATTTGAGAGGGTATACTATTTGAAGACGTTAAGTTGGGGGGCCTTGACT
CGACGGTGGCCCGCGGGCTTTTCCATCTGGTTGGAGGACGAGGGGGTTGA
GGAGGGGTACAGGCTTCTGAAAACTGTAGGGAGGTTTCCGTCTTTGGATG
ACATGGAAGATATCAAAGATGCGGCGGATCAGCAAAGTGGGGAAAATAGG
GGGGTCTTGTCTGAGCTGGCACGGTTTTTTGATTCCTTTCGGAAGATGTA
A
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Coding sequence (CDS) from alignment at chr10:420480..421580+

>NO10G01430.1 ID=NO10G01430.1|Name=NO10G01430.1|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at chr10:420480..421580+ (Nannochloropsis oceanica)
ATGCCAGTCATCGCCGTCGCCTCCGCTTCCACCTGCCTGCTCCAACTGCT
ACTTCTACAACTGCTAGTGCTGCTACCATGGCAGATGCAAGCCTTCATGA
TACCGTCCTTAATGACCCAGACATCTTTATCGCTCTTTCGCAACACTATC
ACTGGGGCAAGAAGACCAAGCTCCCCCCTCTTTTCTCAGACTGAAAATGA
CGGGGGGAAAGGGGAAGAATGGTGGAGACCCAAGCCTGAATGGCGGGACG
ACGCCCAACTTGACATCCCTGGCCTGGCATCCTCCGAGCTCCCCGACAGC
TTTGATGATGCGCTGATAATTGCGGTAGAAGCGGCCCAAGAGGCGTTCGC
CGCGGGCCGCAGTCGTGTCCGCATTGATTTTGATACCACAGCAGGGGACC
TGACCTACACTACGCTCAAAAATTCTCTGCCCTTGGCGTTAGCCTTCGCG
CAATATCTCGGCAAGGAAATTATGGAAGAGGACAAGATTGTGATGGACGA
GGAGGGGAAGAAAGTTGGCTATGAAGGGAATAAGCTCGTGGTCATTTTCC
CAGACACAGGCTCGGCCGTGTGGGCGCAGCAAGAATGGAAAGTAGGGAAA
TTTGGCAAGTCCGCCAAAGTGCCACCATCCGTGCGTTGCGCTGCCTTTCC
CAATGGACAGGTCGATCTGACCACTGATGCTGCTTTCCTTATTGTTTGTC
CAAAGGCGTCTGAAGCACAGGCCACGTTTGACTTGCTTACCTCATTGCCG
CCTGATTCGAAGGTAGTATTAATGAACCCGGAATTGATCAATGCCGAAGT
GGTGGGCTTTGGGATGGCGGGGCGTCGGATCCGTGATGAAGTGGAGAATA
AATTTGAGAGGGTATACTATTTGAAGACGTTAAGTTGGGGGGCCTTGACT
CGACGGTGGCCCGCGGGCTTTTCCATCTGGTTGGAGGACGAGGGGGTTGA
GGAGGGGTACAGGCTTCTGAAAACTGTAGGGAGGTTTCCGTCTTTGGATG
ACATGGAAGATATCAAAGATGCGGCGGATCAGCAAAGTGGGGAAAATAGG
GGGGTCTTGTCTGAGCTGGCACGGTTTTTTGATTCCTTTCGGAAGATGTA
A
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Synonyms
Publications