|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr10 | genome | chr10:310358..313014 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G01010.1 vs.
Match: XP_005853773.1 (2-oxoisovalerate dehydrogenase E1 component, alpha subunit [Nannochloropsis gaditana CCMP526]; XP_005854588.1 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [Nannochloropsis gaditana CCMP526]; EKU21769.1 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [Nannochloropsis gaditana CCMP526]; EKU22583.1 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 659.4 bits (1700), Expect = 9.100e-186 Identity = 326/426 (76.53%), Postives = 362/426 (84.98%), Query Frame = 0
Query: 105 SSSPLPPPAPSSLPPSTTTTAIATNQDQSHGMYPGSSNNVLPFTSLLEVVTPEQHPTWPVYRVLEPDGRVRAGALEPQLGEATVKKMYTIMVRLQAMDTIFYNAQRQGRISFYMTSTGEEATHVGSAAALIPTDPVFAQYREGGVLMWRGFTLDQFADQCFSNCDDLGKGRQMPIHYGTAALHFQTISSPLATQIPQAVGAAYGVKLEDALQPIQQKRCVICYFGEGAASEGDFHAALNFAATLQAPVIFFCRNNGYAISTPVKDQFRGDGIVSRASGYGMHAIRVDGNDLLAVFNACQAAREVCVREGRPVLVEAMTYRVGHHSTSDDSTRYRSLVEIRKWHEHDCPLKRLRRWMEGKGWWSQEEEQQLRDEERVAVLQALERAEVKKKPGRKELFADVYKEKPRHLVEQEEELEAHVKKYPEVY 531
++S PP LPP+ + SHG +PG+ +PFTS L VV PE+H WPVYRVLE DGRVR+GAL P L +A V++MY MVRLQAMDTIFYNAQRQGRISFY+T TGEEATHVGSAAAL P DPV AQYREGGVLMWRGFTLDQFADQCFSN DDLGKGRQMPIHYGTAALHFQTISSPLATQIP AVGAAYG+KLEDA + + KRCVIC+FGEGAASEGDFHAALNFAATLQAPV+FFCRNNGYAISTPVK+QFRGDG+VSRA GYGMHA+RVDGND+LAV++ACQAAREVCVREG+PVLVEAMTYRVGHHSTSDDSTRYRSL EI++WH + PL+R R WMEGKGWWS E+E QLRDEER+AVL+ALERAEVK KPG + LF DVY+EKP HL EQE L HV+KYP+VY
Sbjct: 66 TASSAAPPQSCVLPPT----------EASHGDFPGAPPEGIPFTSSLHVVAPEEHVVWPVYRVLETDGRVRSGALVPDLDQAVVRRMYHTMVRLQAMDTIFYNAQRQGRISFYITCTGEEATHVGSAAALRPEDPVLAQYREGGVLMWRGFTLDQFADQCFSNRDDLGKGRQMPIHYGTAALHFQTISSPLATQIPHAVGAAYGIKLEDASKSAEDKRCVICFFGEGAASEGDFHAALNFAATLQAPVLFFCRNNGYAISTPVKEQFRGDGVVSRAPGYGMHALRVDGNDVLAVYHACQAAREVCVREGKPVLVEAMTYRVGHHSTSDDSTRYRSLSEIKQWHGQEDPLRRFRAWMEGKGWWSDEDEVQLRDEERMAVLRALERAEVKPKPGMEALFEDVYREKPWHLREQEAGLRDHVEKYPDVY 481
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G01010.1 ID=NO10G01010.1|Name=NO10G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2503bp
TGGCTCCTCGGCTGTATGTCTGTTTGTGTTCATAGCATGTTATGTGAGTG
TGGGTTGCGTAAAAAGGTAAGCCCTCGTGATTCAACGCGGCATCGCTCCT
CTCGCTGAGCGTGACCGGCACGGAAAGAAAAATGCGCCCGGGCCACGGCG
TGTCGTGCTTCCTCTGTTTTGACAGCTTTGACAGCATCGTAAATACAATC
CACACACACCCTCTACACACTTCATAATCCACAGGCACACCTACAGACTA
CAGACAAAAGGCGTGATTTACTACTTTCGCCTTCTCTTGCCGGCCAACGC
ACTGCGTCGCCTTCGTCCCTCATTGCCCGCCCCATCACACTCCCTCCTCC
CTCCTGCTGTCACGACCCCTCCTAACATGTACAGCCGTCCTTTGAGGCAG
CTCGTGCTGGCGCAGCGTGCCTGCATCGCATCCATAACGTTGCGATCGAC
GATGGAGACCACGGCGCCAGGGGCGCAGGGATTGTCGCCGTCGAGCATGA
TGCAGCATCGCCTCATCCACCCTCTTCTCCCCTCCTCCGCCCCCGCCGCC
TCGAATGTAGACGCCGCCGCGGCTGCCACCGACGCCACTTCTGTCTCTAT
CCTGGACCACGACAATGACAACGCTGCCCATCCTCACGGCGGCAGCGTTG
TCACTTCCCCACCCTCCATAGAGTCACACCCTGCCGCCTCTTCGTCTCCA
CTCCCCCCTCCTGCTCCCTCCTCCCTACCCCCTTCGACGACCACCACCGC
GATCGCCACCAACCAAGACCAATCCCACGGAATGTATCCCGGCTCGTCCA
ACAATGTCCTCCCTTTCACCTCCCTCCTCGAGGTTGTGACCCCCGAGCAG
CATCCTACCTGGCCAGTATACCGCGTTCTGGAGCCGGACGGCCGGGTCCG
TGCCGGGGCCCTCGAACCACAGTTAGGCGAAGCGACCGTCAAAAAGATGT
ATACGATCATGGTACGATTGCAAGCGATGGACACAATTTTCTACAACGCG
CAACGCCAAGGCCGAATATCCTTCTACATGACTAGCACGGGCGAGGAGGC
CACGCACGTCGGGAGCGCTGCTGCCCTCATTCCCACCGACCCTGTGTTCG
CACAATACCGAGAAGGTGGAGTGTTGATGTGGCGGGGATTCACCCTCGAT
CAATTCGCGGATCAATGCTTCTCCAATTGCGACGACCTGGGGAAGGGCCG
GCAAATGCCCATCCACTACGGCACGGCCGCGCTGCACTTCCAAACCATCT
CCTCGCCCCTCGCCACCCAAATTCCCCAAGCTGTCGGGGCTGCTTACGGA
GTCAAGCTCGAAGACGCCCTCCAGCCGATACAGCAAAAGCGATGCGTCAT
CTGCTATTTTGGAGAGGGGGCGGCGAGCGAGGGCGACTTCCATGCAGCCC
TTAATTTTGCAGCCACCCTGCAGGCACCCGTCATCTTCTTCTGCCGCAAC
AACGGCTATGCGATCAGTACTCCCGTCAAGGACCAGTTCCGGGGGGATGG
TATCGTGAGCCGCGCTTCCGGGTATGGTATGCACGCCATCCGTGTGGACG
GTAACGACCTCCTGGCCGTTTTCAATGCGTGCCAGGCAGCGAGGGAGGTG
TGCGTGAGGGAGGGGAGACCTGTCCTGGTCGAAGCCATGACGTACCGGGT
GGGTCACCATTCCACCAGTGACGACTCGACGCGGTACCGCTCTTTGGTCG
AAATCAGAAAGTGGCACGAACATGATTGTCCGCTTAAGAGGCTTCGGCGA
TGGATGGAGGGGAAGGGGTGGTGGTCCCAAGAGGAGGAGCAGCAGTTACG
AGACGAGGAGAGAGTAGCTGTCTTGCAGGCATTGGAGCGGGCGGAGGTGA
AGAAGAAACCGGGAAGGAAAGAGTTGTTCGCGGATGTGTATAAAGAGAAG
CCCCGGCATTTGGTGGAGCAGGAGGAGGAGTTGGAGGCGCACGTCAAAAA
ATACCCGGAAGTGTATGGGGACTGAGGGCGGGAGGCGCGAGGGCAATGAG
GGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAAAGAGGGGTGGTGATGTGA
TGATAGAGAGAGAGGGGAAAGGGAGGCGAGATGGGGGATGGCGAGGGGGT
TTGGAGGGGTGTGAGAAGAGAGGAAGGAGAAAGCTCGGTGACTGCGTGGT
GCTCTGGTAGCAAGCGAGGGAGGGAAGAGAGGTTAGGTGTGTGAATACTG
TAAAGTGAGATAGTAAAAAATGGAGGCGATATAGGTAGATAGGTTGAATA
AAAAAGCCAGAAAGAAGGAAGGTGGAAAAGAGATGAGAAGAATGGGTGCA
GAGAAGGCGGAGGAGAACTGTGGACGCGCTTATCTACAGAAGATAGATGT
CGTCTTTCCTCCCCCTCCCCGATGGCTTCTTTCCCCTGCATGCCTTGTTG
GAAACCCAAACATGTCATGTCGTTTTCATACCCTTACGGAAACAGAAAGA
GAGTGAGAGAAAATCCAATCACTAAACAGGAAGAGTGTAAGAGAAAATCC
AAT back to topprotein sequence of NO10G01010.1 >NO10G01010.1-protein ID=NO10G01010.1-protein|Name=NO10G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MYSRPLRQLVLAQRACIASITLRSTMETTAPGAQGLSPSSMMQHRLIHPL
LPSSAPAASNVDAAAAATDATSVSILDHDNDNAAHPHGGSVVTSPPSIES
HPAASSSPLPPPAPSSLPPSTTTTAIATNQDQSHGMYPGSSNNVLPFTSL
LEVVTPEQHPTWPVYRVLEPDGRVRAGALEPQLGEATVKKMYTIMVRLQA
MDTIFYNAQRQGRISFYMTSTGEEATHVGSAAALIPTDPVFAQYREGGVL
MWRGFTLDQFADQCFSNCDDLGKGRQMPIHYGTAALHFQTISSPLATQIP
QAVGAAYGVKLEDALQPIQQKRCVICYFGEGAASEGDFHAALNFAATLQA
PVIFFCRNNGYAISTPVKDQFRGDGIVSRASGYGMHAIRVDGNDLLAVFN
ACQAAREVCVREGRPVLVEAMTYRVGHHSTSDDSTRYRSLVEIRKWHEHD
CPLKRLRRWMEGKGWWSQEEEQQLRDEERVAVLQALERAEVKKKPGRKEL
FADVYKEKPRHLVEQEEELEAHVKKYPEVYGD* back to topmRNA from alignment at chr10:310358..313014- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G01010.1 ID=NO10G01010.1|Name=NO10G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2657bp|location=Sequence derived from alignment at chr10:310358..313014- (Nannochloropsis oceanica)
TGGCTCCTCGGCTGTATGTCTGTTTGTGTTCATAGCATGTTATGTGAGTG
TGGGTTGCGTAAAAAGGTAAGCCCTCGTGATTCAACGCGGCATCGCTCCT
CTCGCTGAGCGTGACCGGCACGGAAAGAAAAATGCGCCCGGGCCACGGCG
TGTCGTGCTTCCTCTGTTTTGACAGCTTTGACAGCATCGTAAATACAATC
CACACACACCCTCTACACACTTCATAATCCACAGGCACACCTACAGACTA
CAGACAAAAGGCGTGATTTACTACTTTCGCCTTCTCTTGCCGGCCAACGC
ACTGCGTCGCCTTCGTCCCTCATTGCCCGCCCCATCACACTCCCTCCTCC
CTCCTGCTGTCACGACCCCTCCTAACATGTACAGCCGTCCTTTGAGGCAG
CTCGTGCTGGCGCAGCGTGCCTGCATCGCATCCATAACGTTGCGATCGAC
GATGGAGACCACGGCGCCAGGGGCGCAGGGATTGTCGCCGTCGAGCATGA
TGCAGCATCGCCTCATCCACCCTCTTCTCCCCTCCTCCGCCCCCGCCGCC
TCGAATGTAGACGCCGCCGCGGCTGCCACCGACGCCACTTCTGTCTCTAT
CCTGGACCACGACAATGACAACGCTGCCCATCCTCACGGCGGCAGCGTTG
TCACTTCCCCACCCTCCATAGAGTCACACCCTGCCGCCTCTTCGTCTCCA
CTCCCCCCTCCTGCTCCCTCCTCCCTACCCCCTTCGACGACCACCACCGC
GATCGCCACCAACCAAGACCAATCCCACGGAATGTATCCCGGCTCGTCCA
ACAATGTCCTCCCTTTCACCTCCCTCCTCGAGGTTGTGACCCCCGAGCAG
CATCCTACCTGGCCAGTATACCGCGTTCTGGAGCCGGACGGCCGGGTCCG
TGCCGGGGCCCTCGAACCACAGTTAGGCGAAGCGACCGTCAAAAAGATGT
ATACGATCATGGTACGATTGCAAGCGATGGACACAATTTTCTACAACGCG
CAACGCCAAGGCCGAATATCCTTCTACATGACTAGCACGGGCGAGGAGGC
CACGCACGTCGGGAGCGCTGCTGCCCTCATTCCCACCGACCCTGTGTTCG
CACAATACCGAGAAGGTGGAGTGTTGATGTGGCGGGGATTCACCCTCGAT
CAATTCGCGGATCAATGCTTCTCCAATTGCGACGACCTGGGGAAGGGCCG
GCAAATGCCCATCCACTACGGCACGGCCGCGCTGCACTTCCAAACCATCT
CCTCGCCCCTCGCCACCCAAATTCCCCAAGCTGTCGGGGCTGCTTACGGA
GTCAAGCTCGAAGACGCCCTCCAGCCGATACAGCAAAAGCGATGCGTCAT
CTGCTATTTTGGAGAGGGGGCGGCGAGCGAGGGCGACTTCCATGCAGCCC
TTAATTTTGCAGCCACCCTGCAGGTACAATACATGTACCCATGCCTCTAG
TCCTTCCTCCCTCTCTCCTTTCTCCTCTCTCTCCTCTCTTCTTTGCCCGC
TCTCATGCGCCGACATACATGCCTCTCTCAACCCCCCTTCTCTTCTCCTT
CCCACCCTCCCTCCCTCTCCCTCCCAGGCACCCGTCATCTTCTTCTGCCG
CAACAACGGCTATGCGATCAGTACTCCCGTCAAGGACCAGTTCCGGGGGG
ATGGTATCGTGAGCCGCGCTTCCGGGTATGGTATGCACGCCATCCGTGTG
GACGGTAACGACCTCCTGGCCGTTTTCAATGCGTGCCAGGCAGCGAGGGA
GGTGTGCGTGAGGGAGGGGAGACCTGTCCTGGTCGAAGCCATGACGTACC
GGGTGGGTCACCATTCCACCAGTGACGACTCGACGCGGTACCGCTCTTTG
GTCGAAATCAGAAAGTGGCACGAACATGATTGTCCGCTTAAGAGGCTTCG
GCGATGGATGGAGGGGAAGGGGTGGTGGTCCCAAGAGGAGGAGCAGCAGT
TACGAGACGAGGAGAGAGTAGCTGTCTTGCAGGCATTGGAGCGGGCGGAG
GTGAAGAAGAAACCGGGAAGGAAAGAGTTGTTCGCGGATGTGTATAAAGA
GAAGCCCCGGCATTTGGTGGAGCAGGAGGAGGAGTTGGAGGCGCACGTCA
AAAAATACCCGGAAGTGTATGGGGACTGAGGGCGGGAGGCGCGAGGGCAA
TGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAAAGAGGGGTGGTGAT
GTGATGATAGAGAGAGAGGGGAAAGGGAGGCGAGATGGGGGATGGCGAGG
GGGTTTGGAGGGGTGTGAGAAGAGAGGAAGGAGAAAGCTCGGTGACTGCG
TGGTGCTCTGGTAGCAAGCGAGGGAGGGAAGAGAGGTTAGGTGTGTGAAT
ACTGTAAAGTGAGATAGTAAAAAATGGAGGCGATATAGGTAGATAGGTTG
AATAAAAAAGCCAGAAAGAAGGAAGGTGGAAAAGAGATGAGAAGAATGGG
TGCAGAGAAGGCGGAGGAGAACTGTGGACGCGCTTATCTACAGAAGATAG
ATGTCGTCTTTCCTCCCCCTCCCCGATGGCTTCTTTCCCCTGCATGCCTT
GTTGGAAACCCAAACATGTCATGTCGTTTTCATACCCTTACGGAAACAGA
AAGAGAGTGAGAGAAAATCCAATCACTAAACAGGAAGAGTGTAAGAGAAA
ATCCAAT back to topCoding sequence (CDS) from alignment at chr10:310358..313014- >NO10G01010.1 ID=NO10G01010.1|Name=NO10G01010.1|organism=Nannochloropsis oceanica|type=CDS|length=1599bp|location=Sequence derived from alignment at chr10:310358..313014- (Nannochloropsis oceanica)
ATGTACAGCCGTCCTTTGAGGCAGCTCGTGCTGGCGCAGCGTGCCTGCAT
CGCATCCATAACGTTGCGATCGACGATGGAGACCACGGCGCCAGGGGCGC
AGGGATTGTCGCCGTCGAGCATGATGCAGCATCGCCTCATCCACCCTCTT
CTCCCCTCCTCCGCCCCCGCCGCCTCGAATGTAGACGCCGCCGCGGCTGC
CACCGACGCCACTTCTGTCTCTATCCTGGACCACGACAATGACAACGCTG
CCCATCCTCACGGCGGCAGCGTTGTCACTTCCCCACCCTCCATAGAGTCA
CACCCTGCCGCCTCTTCGTCTCCACTCCCCCCTCCTGCTCCCTCCTCCCT
ACCCCCTTCGACGACCACCACCGCGATCGCCACCAACCAAGACCAATCCC
ACGGAATGTATCCCGGCTCGTCCAACAATGTCCTCCCTTTCACCTCCCTC
CTCGAGGTTGTGACCCCCGAGCAGCATCCTACCTGGCCAGTATACCGCGT
TCTGGAGCCGGACGGCCGGGTCCGTGCCGGGGCCCTCGAACCACAGTTAG
GCGAAGCGACCGTCAAAAAGATGTATACGATCATGGTACGATTGCAAGCG
ATGGACACAATTTTCTACAACGCGCAACGCCAAGGCCGAATATCCTTCTA
CATGACTAGCACGGGCGAGGAGGCCACGCACGTCGGGAGCGCTGCTGCCC
TCATTCCCACCGACCCTGTGTTCGCACAATACCGAGAAGGTGGAGTGTTG
ATGTGGCGGGGATTCACCCTCGATCAATTCGCGGATCAATGCTTCTCCAA
TTGCGACGACCTGGGGAAGGGCCGGCAAATGCCCATCCACTACGGCACGG
CCGCGCTGCACTTCCAAACCATCTCCTCGCCCCTCGCCACCCAAATTCCC
CAAGCTGTCGGGGCTGCTTACGGAGTCAAGCTCGAAGACGCCCTCCAGCC
GATACAGCAAAAGCGATGCGTCATCTGCTATTTTGGAGAGGGGGCGGCGA
GCGAGGGCGACTTCCATGCAGCCCTTAATTTTGCAGCCACCCTGCAGGCA
CCCGTCATCTTCTTCTGCCGCAACAACGGCTATGCGATCAGTACTCCCGT
CAAGGACCAGTTCCGGGGGGATGGTATCGTGAGCCGCGCTTCCGGGTATG
GTATGCACGCCATCCGTGTGGACGGTAACGACCTCCTGGCCGTTTTCAAT
GCGTGCCAGGCAGCGAGGGAGGTGTGCGTGAGGGAGGGGAGACCTGTCCT
GGTCGAAGCCATGACGTACCGGGTGGGTCACCATTCCACCAGTGACGACT
CGACGCGGTACCGCTCTTTGGTCGAAATCAGAAAGTGGCACGAACATGAT
TGTCCGCTTAAGAGGCTTCGGCGATGGATGGAGGGGAAGGGGTGGTGGTC
CCAAGAGGAGGAGCAGCAGTTACGAGACGAGGAGAGAGTAGCTGTCTTGC
AGGCATTGGAGCGGGCGGAGGTGAAGAAGAAACCGGGAAGGAAAGAGTTG
TTCGCGGATGTGTATAAAGAGAAGCCCCGGCATTTGGTGGAGCAGGAGGA
GGAGTTGGAGGCGCACGTCAAAAAATACCCGGAAGTGTATGGGGACTGA back to top
|