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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:214736..217805 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G00640.1 vs.
Match: EWM25297.1 (splicing factor 3a [Nannochloropsis gaditana]) HSP 1 Score: 826.6 bits (2134), Expect = 4.500e-236 Identity = 426/557 (76.48%), Postives = 477/557 (85.64%), Query Frame = 0
Query: 1 MSGMTLERARASHEDIEAYEAAIVAILEDKPRTNKERIWQQNRVANLIGQIQARSQDLLNIYLDKHGVMKEEVASLRGRDAFPTFYSRLDAAKEYHQKHPNLPVKHHPAVQEEAEPRLSFSGEEVWGKYLDLQALHMEFYSMPQTPKWDYQMYLEKFTDFSAVPSGKKNAAWARYVKNLYDYLFSFIQRTQPLLNIEDVVGGEGGREGGGEEAASSKAEAAFEALWQAGELPSGWPKPSTAGEGGREEGQGGKEEARPVDLSKFRAAEDVEVLGMERLKEGLVALGLKCGGTLKERATRLFSTKGKRKEDIDKKLWAGVKKGGKEGGKKEGSGAAANGSRNGHG-GNEGGKEGGGSKKQCAWVEYKIGLLVGEVLGEVIEATRKFVEKKQTRTKEEREAELKQEAEGGLPEMRGEG--EDEDEDEDEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLMVPNTKHFHDITTIKDALALYGRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 555
MSG+TLERARA+HEDIEAYEAAIVAILEDKPRT KER+WQQ+RV+NLI QIQ RS+DL IY D HG MKEE+A+LRGRDAFP+FY+R+D AKEYHQKHP++PVKHHP VQEEAEPR+SFSGEEV+GKYLDLQA HMEFY++PQTPKWDYQ YL + DFS VP+GKKNAAWARYV NLY+YL SFIQRTQPLLN+E+++ G GGEE A+ KAEAAFEALWQAG+LP GWP P+ +GG EE G E + VDL FR A+++EVLGM+RLK GL ALG+KCGGTL+ERA RLF+TKGK+KE+ID KL AG GK+ K EG+G +NG+ G G EGGK G KKQCA E++I LLV EVL EV+EAT+KFVEKKQTRTKEE E EL+QE EG LPE+RGEG EDEDE+E+EDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCL +PNTKHFHDITTIKDALALY RIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL
Sbjct: 1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDAFPSFYARVDHAKEYHQKHPDVPVKHHPPVQEEAEPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVPAGKKNAAWARYVHNLYNYLLSFIQRTQPLLNVEEIL---DGNVDGGEEGATKKAEAAFEALWQAGKLPGGWPVPA---QGGGEE--KGAENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAG---NGKKKSKAEGNGPTSNGNGQGVGTDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPELRGEGEEEDEDEEEEEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G00640.1 ID=NO10G00640.1|Name=NO10G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2502bp
CCCCCATCAGGCCGGCACAATAAATTTAATCTGGCAAACTACATTGTCGC
AGTGTCTGTGTACTGTTGTGTGTTGGCAATTTTGAAATAAGGTGTGGCAG
TAGGACAATTCGATTGTTTGCCCATTCTCAAACTGGGCGAGCACGCTGGC
GAGTTCTTGGCTTGTCGGCGTCTCCGAGATGACGATGGTGAGACAGACAT
CAAAACGACATGGAGCACTGCACTGCACTCACCCACAAAGCACAACACGC
CACGATGCAATAGTGCTCTCACACCCTCTCACCCCCCCCACCCACCCAAT
TCAAGTTAAGCAGAAGCGGCCTCTTTGAGCCACCCACCCCCATCCGCCAC
TTCGCCTCCCCCTCTTCGCCTCCTCCCCTTGGATTTCTTCTCACGCAGCC
CCGTTCGACCGGCAGCACCACCCGCATTCATTCATACCATCATGTCGGGC
ATGACTCTGGAACGGGCACGAGCCAGCCACGAAGACATTGAGGCCTACGA
GGCTGCCATCGTTGCCATTTTGGAGGACAAACCACGGACGAACAAGGAAC
GCATATGGCAACAAAATCGCGTTGCCAACCTAATCGGTCAAATCCAAGCC
CGCTCCCAAGACCTCTTGAACATTTACCTCGACAAACACGGCGTAATGAA
AGAAGAAGTCGCCTCCCTGAGAGGCCGGGACGCTTTCCCCACTTTCTACT
CCCGCCTGGACGCTGCCAAAGAATACCACCAAAAACATCCCAACCTTCCC
GTCAAACACCATCCGGCTGTCCAAGAAGAAGCGGAGCCTCGCCTGTCTTT
CTCCGGGGAGGAAGTGTGGGGGAAATACCTCGACCTCCAAGCATTGCACA
TGGAATTCTATTCCATGCCCCAAACGCCTAAATGGGACTATCAAATGTAC
CTGGAAAAATTTACTGACTTTTCGGCCGTTCCCTCCGGAAAGAAAAACGC
AGCATGGGCCAGATACGTCAAAAACCTGTACGACTATCTCTTTTCGTTCA
TTCAACGCACCCAGCCACTGCTCAACATCGAGGACGTCGTGGGCGGCGAG
GGCGGGAGGGAGGGTGGGGGGGAGGAAGCAGCATCAAGTAAAGCCGAAGC
AGCGTTTGAGGCGCTTTGGCAAGCAGGAGAATTACCGAGCGGCTGGCCCA
AGCCCTCTACAGCAGGCGAAGGTGGGAGGGAGGAAGGGCAGGGAGGGAAG
GAGGAAGCACGGCCGGTTGACTTGAGCAAATTTCGAGCCGCTGAGGATGT
GGAGGTGCTGGGGATGGAGAGGTTGAAGGAGGGATTGGTGGCTTTGGGCC
TTAAGTGCGGAGGAACGTTGAAGGAACGTGCGACCAGGTTGTTCTCGACA
AAGGGGAAGAGAAAGGAGGATATCGATAAGAAGCTGTGGGCAGGGGTGAA
GAAGGGAGGGAAGGAGGGAGGGAAGAAGGAGGGGAGTGGAGCAGCAGCGA
ATGGGAGTAGGAATGGACACGGAGGTAACGAGGGAGGAAAAGAGGGAGGG
GGCAGTAAGAAGCAGTGTGCTTGGGTGGAATATAAGATAGGGTTATTGGT
CGGGGAGGTCTTGGGGGAGGTGATCGAAGCGACCAGAAAGTTCGTCGAGA
AGAAACAGACAAGAACGAAGGAGGAGAGGGAGGCTGAGTTGAAGCAGGAG
GCGGAAGGGGGCTTGCCAGAGATGAGGGGCGAGGGGGAAGACGAGGACGA
GGACGAGGACGAGGACGAGGACGGGCCCATTTACAATCCATTGAATTTGC
CGTTAGGCTACGACGGGAAACCGATCCCTTACTGGCTGTACAAACTGCAT
GGTCTGGGCGTGGAGTACAAGTGTGAGATATGTGGCAATCATTCTTATTG
GGGCCGCCGAGCATTTGACAGACATTTCCAAGAATGGCGTCATGCCCATG
GGATGCGTTGTTTGATGGTGCCCAACACGAAGCACTTCCACGATATCACC
ACCATTAAAGACGCCTTGGCTCTGTACGGGCGGATCAAGGAGCAACTGAA
GGGCGAAGTTTACGATGCAGAGGTGGAGGAGGAGTTCGAGGACTCGGAGG
GTAACGTGTTGAATCGACGGACCTTCCAAGACCTGGCTCGGCAGGGTTTG
CTCTAGATGGTTGCTGGGTATCCTAATTATGTGATGGCCGACACCTGCCG
ACGTTCCTCCTGTTTTCTCACCTCTGCCCACTGTGTGGAAACCCCCTCGT
TCTCCCTGAGGTTCCCAGGCCAACGTATCTAAGAGACGGACCTTTCAAAA
CATGTATTCACAGGCGCGATTCTAGAACATGTATTCACAGGCGCGGTACT
AGAAGTGTCGCAGTGAGAAGGAGAAGGAGAAGGAGGAGGGGGAGGGAGGG
TGAACAGAAGGAGGAAGACGGAGGAAGAAAAAAGGAGGCTTGTGTGCGTG
CATGACAGCGGGGAACGGCAAGTGAAGGAGAAGAGGGTTGAAAACAAATG
AATAAAGAAAAGAAGCAAGCAAACGTTGTCAACGAAGCAACTTACCCAAG
AA back to topprotein sequence of NO10G00640.1 >NO10G00640.1-protein ID=NO10G00640.1-protein|Name=NO10G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MSGMTLERARASHEDIEAYEAAIVAILEDKPRTNKERIWQQNRVANLIGQ
IQARSQDLLNIYLDKHGVMKEEVASLRGRDAFPTFYSRLDAAKEYHQKHP
NLPVKHHPAVQEEAEPRLSFSGEEVWGKYLDLQALHMEFYSMPQTPKWDY
QMYLEKFTDFSAVPSGKKNAAWARYVKNLYDYLFSFIQRTQPLLNIEDVV
GGEGGREGGGEEAASSKAEAAFEALWQAGELPSGWPKPSTAGEGGREEGQ
GGKEEARPVDLSKFRAAEDVEVLGMERLKEGLVALGLKCGGTLKERATRL
FSTKGKRKEDIDKKLWAGVKKGGKEGGKKEGSGAAANGSRNGHGGNEGGK
EGGGSKKQCAWVEYKIGLLVGEVLGEVIEATRKFVEKKQTRTKEEREAEL
KQEAEGGLPEMRGEGEDEDEDEDEDEDGPIYNPLNLPLGYDGKPIPYWLY
KLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLMVPNTKHFH
DITTIKDALALYGRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLAR
QGLL* back to topmRNA from alignment at chr10:214736..217805- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G00640.1 ID=NO10G00640.1|Name=NO10G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=3070bp|location=Sequence derived from alignment at chr10:214736..217805- (Nannochloropsis oceanica)
CCCCCATCAGGCCGGCACAATAAATTTAATCTGGCAAACTACATTGTCGC
AGTGTCTGTGTACTGTTGTGTGTTGGCAATTTTGAAATAAGGTGTGGCAG
TAGGACAATTCGATTGTTTGCCCATTCTCAAACTGGGCGAGCACGCTGGC
GAGTTCTTGGCTTGTCGGCGTCTCCGAGATGACGATGGTGAGACAGACAT
CAAAACGACATGGAGCACTGCACTGCACTCACCCACAAAGCACAACACGC
CACGATGCAATAGTGCTCTCACACCCTCTCACCCCCCCCACCCACCCAAT
TCAAGTTAAGCAGAAGCGGCCTCTTTGAGCCACCCACCCCCATCCGCCAC
TTCGCCTCCCCCTCTTCGCCTCCTCCCCTTGGATTTCTTCTCACGCAGCC
CCGTTCGACCGGCAGCACCACCCGCATTCATTCATACCATCATGTCGGGC
ATGACTCTGGAACGGGCACGAGCCAGCCACGAAGACATTGAGGCCTACGA
GGCTGCCATCGTTGCCATTTTGGAGGACAAACCACGGACGGTACGTGTTG
TTATCCCCCCCTCCTCTTCGCATGCCTCTTTGCTTGCCTCCAGGTCGACT
GTCTTGTGAGAAACAAGTGTCAAGCATGTACCTTACAGCGTCACCGTCCC
ACAAAGAAAGGTTGGACTGGAGTATGCAGTATATACTGCTCTTATCGCAT
TTCTGTCTTGCCTTCTATGACTGAACTGTCAGTCCATAACATAAGCCTCC
TCCCAAGTGCTCCCTCCCTTCCTTCCCCCACCCACCCGGAATAGAACAAG
GAACGCATATGGCAACAAAATCGCGTTGCCAACCTAATCGGTCAAATCCA
AGCCCGCTCCCAAGACCTCTTGAACATTTACCTCGACAAACACGGCGTAA
TGAAAGAAGAAGTCGCCTCCCTGAGAGGCCGGGACGCTTTCCCCACTTTC
TACTCCCGCCTGGACGCTGCCAAAGAATACCACCAAAAACATCCCAACCT
TCCCGTCAAACACCATCCGGCTGTCCAAGAAGAAGCGGAGCCTCGCCTGT
CTTTCTCCGGGGAGGAAGTGTGGGGGAAATACCTCGACCTCCAAGCATTG
CACATGGAATTCTATTCCATGCCCCAAACGCCTAAATGGGACTATCAAAT
GTACCTGGAAAAATTTACTGACTTTTCGGCCGTTCCCTCCGGAAAGAAAA
ACGCAGCATGGGCCAGGTGAGGGGGGAGGGGGGGAAGTGAAGGAAGAAAG
GAGTGAGGATACCCGGCTTGAGTATAGGTGCGAACGGTACAAACTCACCC
CCCATCCATTCCTCCCTCCGTACCTATCGATTCTACAACTTTCCCTCTTA
GATACGTCAAAAACCTGTACGACTATCTCTTTTCGTTCATTCAACGCACC
CAGCCACTGCTCAACATCGAGGACGTCGTGGGCGGCGAGGGCGGGAGGGA
GGGTGGGGGGGAGGAAGCAGCATCAAGTAAAGCCGAAGCAGCGTTTGAGG
CGCTTTGGCAAGCAGGAGAATTACCGAGCGGCTGGCCCAAGCCCTCTACA
GCAGGCGAAGGTGGGAGGGAGGAAGGGCAGGGAGGGAAGGAGGAAGCACG
GCCGGTTGACTTGAGCAAATTTCGAGCCGCTGAGGATGTGGAGGTGCTGG
GGATGGAGAGGTTGAAGGAGGGATTGGTGGCTTTGGGCCTTAAGTGCGGA
GGAACGTTGAAGGAACGTGCGACCAGGTTGTTCTCGACAAAGGGGAAGAG
AAAGGAGGATATCGATAAGAAGCTGTGGGCAGGGGTGAAGAAGGGAGGGA
AGGAGGGAGGGAAGAAGGAGGGGAGTGGAGCAGCAGCGAATGGGAGTAGG
AATGGACACGGAGGTAACGAGGGAGGAAAAGAGGGAGGGGGCAGTAAGAA
GCAGTGTGCTTGGGTGGAATATAAGATAGGGTTATTGGTCGGGGAGGTCT
TGGGGGAGGTGATCGAAGCGACCAGAAAGTTCGTCGAGAAGAAACAGACA
AGAACGAAGGAGGAGAGGGAGGCTGAGTTGAAGCAGGAGGCGGAAGGGGG
CTTGCCAGAGATGAGGGGCGAGGGGGAAGACGAGGACGAGGACGAGGACG
AGGACGAGGACGGGCCCATTTACAATCCATTGAATTTGCCGTTAGGCTAC
GACGGGAAACCGATCCCTTACTGGCTGTACAAACTGCATGGTCTGGGCGT
GGAGTACAAGTGTGAGATATGTGGCAATCATTCTTATTGGGGCCGCCGAG
CATTTGACAGGTTCGTTTCGTTCGCTGCTCCGCCCTCTTTCCAACCCCCC
TTCCTACCTTCCATGCTCATAGGATGCTTTGGAAATGTAACACGGCGCGT
TGGTTGAAGAGAGTCATATCGTATTCCTCATTATCACTATCCCTCCCTTT
CTCCTTCCCTCCCTCTCTCTCTTCCTCCTGTCCCACCAGACATTTCCAAG
AATGGCGTCATGCCCATGGGATGCGTTGTTTGATGGTGCCCAACACGAAG
CACTTCCACGATATCACCACCATTAAAGACGCCTTGGCTCTGTACGGGCG
GATCAAGGAGCAACTGAAGGGCGAAGTTTACGATGCAGAGGTGGAGGAGG
AGTTCGAGGACTCGGAGGGTAACGTGTTGAATCGACGGACCTTCCAAGAC
CTGGCTCGGCAGGGTTTGCTCTAGATGGTTGCTGGGTATCCTAATTATGT
GATGGCCGACACCTGCCGACGTTCCTCCTGTTTTCTCACCTCTGCCCACT
GTGTGGAAACCCCCTCGTTCTCCCTGAGGTTCCCAGGCCAACGTATCTAA
GAGACGGACCTTTCAAAACATGTATTCACAGGCGCGATTCTAGAACATGT
ATTCACAGGCGCGGTACTAGAAGTGTCGCAGTGAGAAGGAGAAGGAGAAG
GAGGAGGGGGAGGGAGGGTGAACAGAAGGAGGAAGACGGAGGAAGAAAAA
AGGAGGCTTGTGTGCGTGCATGACAGCGGGGAACGGCAAGTGAAGGAGAA
GAGGGTTGAAAACAAATGAATAAAGAAAAGAAGCAAGCAAACGTTGTCAA
CGAAGCAACTTACCCAAGAA back to topCoding sequence (CDS) from alignment at chr10:214736..217805- >NO10G00640.1 ID=NO10G00640.1|Name=NO10G00640.1|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at chr10:214736..217805- (Nannochloropsis oceanica)
ATGTCGGGCATGACTCTGGAACGGGCACGAGCCAGCCACGAAGACATTGA
GGCCTACGAGGCTGCCATCGTTGCCATTTTGGAGGACAAACCACGGACGA
ACAAGGAACGCATATGGCAACAAAATCGCGTTGCCAACCTAATCGGTCAA
ATCCAAGCCCGCTCCCAAGACCTCTTGAACATTTACCTCGACAAACACGG
CGTAATGAAAGAAGAAGTCGCCTCCCTGAGAGGCCGGGACGCTTTCCCCA
CTTTCTACTCCCGCCTGGACGCTGCCAAAGAATACCACCAAAAACATCCC
AACCTTCCCGTCAAACACCATCCGGCTGTCCAAGAAGAAGCGGAGCCTCG
CCTGTCTTTCTCCGGGGAGGAAGTGTGGGGGAAATACCTCGACCTCCAAG
CATTGCACATGGAATTCTATTCCATGCCCCAAACGCCTAAATGGGACTAT
CAAATGTACCTGGAAAAATTTACTGACTTTTCGGCCGTTCCCTCCGGAAA
GAAAAACGCAGCATGGGCCAGATACGTCAAAAACCTGTACGACTATCTCT
TTTCGTTCATTCAACGCACCCAGCCACTGCTCAACATCGAGGACGTCGTG
GGCGGCGAGGGCGGGAGGGAGGGTGGGGGGGAGGAAGCAGCATCAAGTAA
AGCCGAAGCAGCGTTTGAGGCGCTTTGGCAAGCAGGAGAATTACCGAGCG
GCTGGCCCAAGCCCTCTACAGCAGGCGAAGGTGGGAGGGAGGAAGGGCAG
GGAGGGAAGGAGGAAGCACGGCCGGTTGACTTGAGCAAATTTCGAGCCGC
TGAGGATGTGGAGGTGCTGGGGATGGAGAGGTTGAAGGAGGGATTGGTGG
CTTTGGGCCTTAAGTGCGGAGGAACGTTGAAGGAACGTGCGACCAGGTTG
TTCTCGACAAAGGGGAAGAGAAAGGAGGATATCGATAAGAAGCTGTGGGC
AGGGGTGAAGAAGGGAGGGAAGGAGGGAGGGAAGAAGGAGGGGAGTGGAG
CAGCAGCGAATGGGAGTAGGAATGGACACGGAGGTAACGAGGGAGGAAAA
GAGGGAGGGGGCAGTAAGAAGCAGTGTGCTTGGGTGGAATATAAGATAGG
GTTATTGGTCGGGGAGGTCTTGGGGGAGGTGATCGAAGCGACCAGAAAGT
TCGTCGAGAAGAAACAGACAAGAACGAAGGAGGAGAGGGAGGCTGAGTTG
AAGCAGGAGGCGGAAGGGGGCTTGCCAGAGATGAGGGGCGAGGGGGAAGA
CGAGGACGAGGACGAGGACGAGGACGAGGACGGGCCCATTTACAATCCAT
TGAATTTGCCGTTAGGCTACGACGGGAAACCGATCCCTTACTGGCTGTAC
AAACTGCATGGTCTGGGCGTGGAGTACAAGTGTGAGATATGTGGCAATCA
TTCTTATTGGGGCCGCCGAGCATTTGACAGACATTTCCAAGAATGGCGTC
ATGCCCATGGGATGCGTTGTTTGATGGTGCCCAACACGAAGCACTTCCAC
GATATCACCACCATTAAAGACGCCTTGGCTCTGTACGGGCGGATCAAGGA
GCAACTGAAGGGCGAAGTTTACGATGCAGAGGTGGAGGAGGAGTTCGAGG
ACTCGGAGGGTAACGTGTTGAATCGACGGACCTTCCAAGACCTGGCTCGG
CAGGGTTTGCTCTAG back to top
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