NO10G00530.1, NO10G00530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00530.1
Unique NameNO10G00530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length417
Alignment locationchr10:183264..183680 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:183264..183680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00530.1 vs.
Match: EWM25289.1 (obtusifoliol 14-alpha demethylase [Nannochloropsis gaditana])

HSP 1 Score: 254.6 bits (649), Expect = 1.800e-64
Identity = 120/137 (87.59%), Postives = 129/137 (94.16%), Query Frame = 0 
Query:    1 MHPPLIMLMRKCRQDLVVQSEEKKTYTVPKGSVVAVSPSVQQRLPHLFPNPDAFDPDRFAPPREEHKPLFAYAPFGGGLHACLGQQFAFVQLKTVLSLVLSKYELTLATPDGEVPPPNYHAMVVGPTAPCTVTYKRR 138
            MHPPLIMLMR+CRQDL+VQS+E K +TVPKGSVVAVSPSVQQRLP LFP PD+FDPDRFAPPREEHKPLFAY PFGGGLHACLGQQFA+VQLKTVLSL+ SK+ELTLATPDG VPPPNYHAMVVGPTAPCTV Y+RR
Sbjct:  414 MHPPLIMLMRQCRQDLLVQSQEGKAFTVPKGSVVAVSPSVQQRLPSLFPAPDSFDPDRFAPPREEHKPLFAYVPFGGGLHACLGQQFAYVQLKTVLSLLFSKFELTLATPDGAVPPPNYHAMVVGPTAPCTVKYRRR 550
The following BLAST results are available for this feature:
BLAST of NO10G00530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25289.11.800e-6487.59obtusifoliol 14-alpha demethylase [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00530NO10G00530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00530.1NO10G00530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00530.1.cds1NO10G00530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00530.1 ID=NO10G00530.1|Name=NO10G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=417bp
ATGCACCCGCCTCTGATCATGCTCATGCGGAAATGCAGGCAGGACCTAGT
AGTCCAGTCGGAGGAGAAGAAGACGTACACAGTGCCCAAGGGCAGCGTTG
TCGCGGTCTCTCCCTCCGTGCAGCAGCGGCTGCCGCACCTCTTCCCAAAC
CCCGATGCGTTTGATCCGGACCGCTTCGCCCCGCCCAGGGAAGAGCACAA
ACCGTTGTTTGCCTACGCGCCATTTGGGGGCGGGCTTCACGCGTGTCTAG
GCCAACAGTTTGCTTTTGTCCAGTTGAAGACGGTCTTGTCGCTGGTGCTG
TCGAAGTATGAGTTGACCTTGGCCACGCCCGATGGGGAGGTGCCACCGCC
CAACTACCATGCCATGGTGGTAGGGCCCACAGCGCCGTGTACTGTTACGT
ACAAAAGACGGAAGTAA
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protein sequence of NO10G00530.1

>NO10G00530.1-protein ID=NO10G00530.1-protein|Name=NO10G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MHPPLIMLMRKCRQDLVVQSEEKKTYTVPKGSVVAVSPSVQQRLPHLFPN
PDAFDPDRFAPPREEHKPLFAYAPFGGGLHACLGQQFAFVQLKTVLSLVL
SKYELTLATPDGEVPPPNYHAMVVGPTAPCTVTYKRRK*
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mRNA from alignment at chr10:183264..183680+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00530.1 ID=NO10G00530.1|Name=NO10G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=417bp|location=Sequence derived from alignment at chr10:183264..183680+ (Nannochloropsis oceanica)
ATGCACCCGCCTCTGATCATGCTCATGCGGAAATGCAGGCAGGACCTAGT
AGTCCAGTCGGAGGAGAAGAAGACGTACACAGTGCCCAAGGGCAGCGTTG
TCGCGGTCTCTCCCTCCGTGCAGCAGCGGCTGCCGCACCTCTTCCCAAAC
CCCGATGCGTTTGATCCGGACCGCTTCGCCCCGCCCAGGGAAGAGCACAA
ACCGTTGTTTGCCTACGCGCCATTTGGGGGCGGGCTTCACGCGTGTCTAG
GCCAACAGTTTGCTTTTGTCCAGTTGAAGACGGTCTTGTCGCTGGTGCTG
TCGAAGTATGAGTTGACCTTGGCCACGCCCGATGGGGAGGTGCCACCGCC
CAACTACCATGCCATGGTGGTAGGGCCCACAGCGCCGTGTACTGTTACGT
ACAAAAGACGGAAGTAA
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Coding sequence (CDS) from alignment at chr10:183264..183680+

>NO10G00530.1 ID=NO10G00530.1|Name=NO10G00530.1|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at chr10:183264..183680+ (Nannochloropsis oceanica)
ATGCACCCGCCTCTGATCATGCTCATGCGGAAATGCAGGCAGGACCTAGT
AGTCCAGTCGGAGGAGAAGAAGACGTACACAGTGCCCAAGGGCAGCGTTG
TCGCGGTCTCTCCCTCCGTGCAGCAGCGGCTGCCGCACCTCTTCCCAAAC
CCCGATGCGTTTGATCCGGACCGCTTCGCCCCGCCCAGGGAAGAGCACAA
ACCGTTGTTTGCCTACGCGCCATTTGGGGGCGGGCTTCACGCGTGTCTAG
GCCAACAGTTTGCTTTTGTCCAGTTGAAGACGGTCTTGTCGCTGGTGCTG
TCGAAGTATGAGTTGACCTTGGCCACGCCCGATGGGGAGGTGCCACCGCC
CAACTACCATGCCATGGTGGTAGGGCCCACAGCGCCGTGTACTGTTACGT
ACAAAAGACGGAAGTAA
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Synonyms
Publications