NO09G04270.1, NO09G04270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G04270.1
Unique NameNO09G04270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1203
Alignment locationchr9:1276627..1277829 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1276627..1277829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO09G04270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G04270NO09G04270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G04270.1NO09G04270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G04270.1.cds1NO09G04270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G04270.1 ID=NO09G04270.1|Name=NO09G04270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp
GGTACCCAATTTACTTAGGTACCCTATTACCCTCACGGTTTGTTACACGA
ATAGTTCCACGGGTCACGCCGGATACCCGGGAAACCGATACTTGTAGCCC
ATTCCTTATGCCATCTTTACAGCACTTTCAATTCGTTTACTTGATCTTTC
CAAACAGCATGCCTCATTCCAAATACGAAGAAAAATACACCCGCAAAAAG
CGAATCTCTTCACCCATCGTTATGGTGAGGGCTTGGATGGTTTTCATGGT
GATGACCGCTGGCATTATGTTTGTCGTATTCATGACCAAATGTCTGAATC
AAGCCTTCTCTCTAGGTCGTGAAGACCTTATTCGCGAAGCTAATCCTCTT
TCATGTGCTCCAGTCCGTACCAAGCTTGTGTTTGTGACGGCCTGGATCGA
CCTGGGACCTGAACACATAGAAAAGACGCCGGCTTCAAGGCTGGAGCATT
TTAGAAGATTGGCTTCGAGTGGTATTTCTTTGTTTGTATTTGTCAGTGCT
TCCTATGTCGCTGTCATGGAGGAAGTTCAGACCGAATTCCCCAACATTGT
CGGGCTACAGTCCGTGGAAGTGGATGACTTGCAATCGGTGCAAACCATAA
GGTCTTTTATCGACTTGAGGCTTCCTACTTCCTTAAACGACAACAAGGAC
ACGCACGTATTTCTAGAGCTCATGCTGGCAAAAATTGACTTTGTCTACCA
AGCCCTCGCATATACGGATGCAACCCACCTTGCATGGATAGACTTTAATA
TAGCCCACGTGTTTGATGATTCGGTAAACGCTCTGGAAGCATTGCAAGAT
TTGCAGCAAAGGGATCTCGTGCCTTACATTCTCATATTCCCTACCATCTG
GGATCGCTCCAACATCAATATGGAGGAACTGATCCAACGAGTCAACTGGC
GTTTCGCAGGGGGACTATTTTTAGGCGATCGAAGATCTCTGGAGCAGTGG
TACAACTTGTGCTCTGACACCCTCAGGCTATTCCTTGCCCAGACCCAAAC
CCTTGTGTGGGAGGTAAACTTTTGGGCATGGCTTGAAAACGTTTACCCTA
ATTCTTTTCATCCGCAGGTGTACACATCGGATCATGACAACAGCCTTGTG
GTAATTCCTCCGACATCGTTTGGTACCTTTTGACGATGGCAGAATGGCTT
CTAGGTCTCAAACAAGCAAAGAATAAACGAGCATCACGATCGTGAGAATA
ACG
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protein sequence of NO09G04270.1

>NO09G04270.1-protein ID=NO09G04270.1-protein|Name=NO09G04270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MPSLQHFQFVYLIFPNSMPHSKYEEKYTRKKRISSPIVMVRAWMVFMVMT
AGIMFVVFMTKCLNQAFSLGREDLIREANPLSCAPVRTKLVFVTAWIDLG
PEHIEKTPASRLEHFRRLASSGISLFVFVSASYVAVMEEVQTEFPNIVGL
QSVEVDDLQSVQTIRSFIDLRLPTSLNDNKDTHVFLELMLAKIDFVYQAL
AYTDATHLAWIDFNIAHVFDDSVNALEALQDLQQRDLVPYILIFPTIWDR
SNINMEELIQRVNWRFAGGLFLGDRRSLEQWYNLCSDTLRLFLAQTQTLV
WEVNFWAWLENVYPNSFHPQVYTSDHDNSLVVIPPTSFGTF*
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mRNA from alignment at chr9:1276627..1277829+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G04270.1 ID=NO09G04270.1|Name=NO09G04270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp|location=Sequence derived from alignment at chr9:1276627..1277829+ (Nannochloropsis oceanica)
GGTACCCAATTTACTTAGGTACCCTATTACCCTCACGGTTTGTTACACGA
ATAGTTCCACGGGTCACGCCGGATACCCGGGAAACCGATACTTGTAGCCC
ATTCCTTATGCCATCTTTACAGCACTTTCAATTCGTTTACTTGATCTTTC
CAAACAGCATGCCTCATTCCAAATACGAAGAAAAATACACCCGCAAAAAG
CGAATCTCTTCACCCATCGTTATGGTGAGGGCTTGGATGGTTTTCATGGT
GATGACCGCTGGCATTATGTTTGTCGTATTCATGACCAAATGTCTGAATC
AAGCCTTCTCTCTAGGTCGTGAAGACCTTATTCGCGAAGCTAATCCTCTT
TCATGTGCTCCAGTCCGTACCAAGCTTGTGTTTGTGACGGCCTGGATCGA
CCTGGGACCTGAACACATAGAAAAGACGCCGGCTTCAAGGCTGGAGCATT
TTAGAAGATTGGCTTCGAGTGGTATTTCTTTGTTTGTATTTGTCAGTGCT
TCCTATGTCGCTGTCATGGAGGAAGTTCAGACCGAATTCCCCAACATTGT
CGGGCTACAGTCCGTGGAAGTGGATGACTTGCAATCGGTGCAAACCATAA
GGTCTTTTATCGACTTGAGGCTTCCTACTTCCTTAAACGACAACAAGGAC
ACGCACGTATTTCTAGAGCTCATGCTGGCAAAAATTGACTTTGTCTACCA
AGCCCTCGCATATACGGATGCAACCCACCTTGCATGGATAGACTTTAATA
TAGCCCACGTGTTTGATGATTCGGTAAACGCTCTGGAAGCATTGCAAGAT
TTGCAGCAAAGGGATCTCGTGCCTTACATTCTCATATTCCCTACCATCTG
GGATCGCTCCAACATCAATATGGAGGAACTGATCCAACGAGTCAACTGGC
GTTTCGCAGGGGGACTATTTTTAGGCGATCGAAGATCTCTGGAGCAGTGG
TACAACTTGTGCTCTGACACCCTCAGGCTATTCCTTGCCCAGACCCAAAC
CCTTGTGTGGGAGGTAAACTTTTGGGCATGGCTTGAAAACGTTTACCCTA
ATTCTTTTCATCCGCAGGTGTACACATCGGATCATGACAACAGCCTTGTG
GTAATTCCTCCGACATCGTTTGGTACCTTTTGACGATGGCAGAATGGCTT
CTAGGTCTCAAACAAGCAAAGAATAAACGAGCATCACGATCGTGAGAATA
ACG
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Coding sequence (CDS) from alignment at chr9:1276627..1277829+

>NO09G04270.1 ID=NO09G04270.1|Name=NO09G04270.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr9:1276627..1277829+ (Nannochloropsis oceanica)
ATGCCATCTTTACAGCACTTTCAATTCGTTTACTTGATCTTTCCAAACAG
CATGCCTCATTCCAAATACGAAGAAAAATACACCCGCAAAAAGCGAATCT
CTTCACCCATCGTTATGGTGAGGGCTTGGATGGTTTTCATGGTGATGACC
GCTGGCATTATGTTTGTCGTATTCATGACCAAATGTCTGAATCAAGCCTT
CTCTCTAGGTCGTGAAGACCTTATTCGCGAAGCTAATCCTCTTTCATGTG
CTCCAGTCCGTACCAAGCTTGTGTTTGTGACGGCCTGGATCGACCTGGGA
CCTGAACACATAGAAAAGACGCCGGCTTCAAGGCTGGAGCATTTTAGAAG
ATTGGCTTCGAGTGGTATTTCTTTGTTTGTATTTGTCAGTGCTTCCTATG
TCGCTGTCATGGAGGAAGTTCAGACCGAATTCCCCAACATTGTCGGGCTA
CAGTCCGTGGAAGTGGATGACTTGCAATCGGTGCAAACCATAAGGTCTTT
TATCGACTTGAGGCTTCCTACTTCCTTAAACGACAACAAGGACACGCACG
TATTTCTAGAGCTCATGCTGGCAAAAATTGACTTTGTCTACCAAGCCCTC
GCATATACGGATGCAACCCACCTTGCATGGATAGACTTTAATATAGCCCA
CGTGTTTGATGATTCGGTAAACGCTCTGGAAGCATTGCAAGATTTGCAGC
AAAGGGATCTCGTGCCTTACATTCTCATATTCCCTACCATCTGGGATCGC
TCCAACATCAATATGGAGGAACTGATCCAACGAGTCAACTGGCGTTTCGC
AGGGGGACTATTTTTAGGCGATCGAAGATCTCTGGAGCAGTGGTACAACT
TGTGCTCTGACACCCTCAGGCTATTCCTTGCCCAGACCCAAACCCTTGTG
TGGGAGGTAAACTTTTGGGCATGGCTTGAAAACGTTTACCCTAATTCTTT
TCATCCGCAGGTGTACACATCGGATCATGACAACAGCCTTGTGGTAATTC
CTCCGACATCGTTTGGTACCTTTTGA
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Synonyms
Publications