NO09G04230.1, NO09G04230.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G04230.1
Unique Name	NO09G04230.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1273
Alignment location	chr9:1263244..1264692 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:1263244..1264692 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO09G04230.1 vs.

BLAST of NO09G04230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G04230	NO09G04230	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G04230.1	NO09G04230.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G04230.1.cds1	NO09G04230.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G04230.1.cds2	NO09G04230.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:1263244..1264692-
coding sequence from alignment at chr9:1263244..1264692-

mRNA sequence

>NO09G04230.1 ID=NO09G04230.1|Name=NO09G04230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1273bp
ATGTTCGTAGCGGTAAATGAAGTACTTCGCGAGGATGGGCTCGACGGAAT
GGAGTATGGGCTTGCGTTCACGCGGATTGATTTGAAGCGTGTCCTTCTTC
AACATTTGCGCTCGAAGGGAGGAAATGGGACGCCGCTAAGGAGGGCGGCT
GCTGCGACGTCCATTTGGCTAAAGGTCGACGACGGACGAAGAATTTTGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGG
AGGAGGAGGAGGAGGAGGAAGAGGATGTAGACCTAGGCCCAGAGCTGGCA
GGAAGCACACGGTCGTATGATGTCGGACACTGCGATTTCAATTATTCCCT
GGTAAGGTTGTAGTCTTCGTGATGATTGAAGATGAAGACCTCATTCTTGT
TTTAGAATGAAAAATGAAAAATAATACGGCGTGACAGGATAAAGCCTGCG
GACTTTCGAGTGAAACTACAAGAAGGACTACCATAAACCAGATTGGAAAC
GAACCTCATGGAAAAAGGAATAAAAAGCACGACACAGGTACGAGAAATTC
ATCTAATGGCACTCCAATCCCAATCAACCAGCTTTTCGTCGGTACACATC
GCTGCGACCTCCTTGTCCATACAGTTGTTTGATGGGGAAAGTCCAAGGCG
AAAATTTCGTCTATCATGAAGTAGGATCTTGGATATTCTATGGTTGGATC
CGCAGGCCTTGCATTCCGCATATAGTATATAACATGTGGGGACATTGCCA
CTTTTATACTTGCATCGAACATACATAACAAGCAAAAATCCTCTGCGGGT
TCAGACTCAGACCAAAGACCAGCTTCAAAAAATCGTCTTTTGATTGCAAA
ACTGCCAACGCGAGCCCTTTCGAATAGGACATCCCTCTTGGAAGGACGCA
CATGAAATCCATCCGCCATGCGAAATATACTGCTTCAACCATTGTATCCA
TACTACTTTCCTCCAGAAGTCCAGTGACGTGGTCGGGGGACAGAACATCG
TCATCATCAACGAATGCGAGCCGTTCCGAGCATTCAATCCTGCTCATCCC
ATAATTTCGAAGAGTGTAGGCAAAGTTCGATTCTCCTACTTTGGGAATGG
CATGTAAATATTATCTGATCCTCGGGTCCGATAGGTAGCCAGAAGTCGCA
GAAGTTATTTGTTGTTTGCCATAAAAAACAATCACGTTGTTCGATATGTT
GTGGGTTTGAATGAGAAGAGAACTGTTCGGTCAATAGTATCTCGTCCCTT
CGATGGGATTACGAAGGTCACAG

protein sequence of NO09G04230.1

>NO09G04230.1-protein ID=NO09G04230.1-protein|Name=NO09G04230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MFVAVNEVLREDGLDGMEYGLAFTRIDLKRVLLQHLRSKGGNGTPLRRAA
AATSIWLKVDDGRRILEEEEEEEEEEEEEEKEEEEEEEEEEDVDLGPELA
GSTRSYDVGHCDFNYSLVRL*

mRNA from alignment at chr9:1263244..1264692-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G04230.1 ID=NO09G04230.1|Name=NO09G04230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1449bp|location=Sequence derived from alignment at chr9:1263244..1264692- (Nannochloropsis oceanica)
ATGTTCGTAGCGGTAAATGAAGTACTTCGCGAGGATGGGCTCGACGGAAT
GGAGTATGGGCTTGCGTTCACGCGGATTGATTTGAAGCGTGTCCTTCTTC
AACATTTGCGCTCGAAGGGAGGAAATGGGACGCCGTGCTTATAGGCGATG
GCCCGCTTAATGGCCTCAAATCCTTCCGTTCGTTGGGCCAGCACCTCCAC
CACCGCCGCCTGCATATTCCCTGTCCTAGCAGCCGGATCGGGCTTAGATG
TGACGGCACTTCCACCGCTTGTGGTGGATGACGTAGTTGCCGGGGTTGCT
TGTCGGTTAGGCTAAGGAGGGCGGCTGCTGCGACGTCCATTTGGCTAAAG
GTCGACGACGGACGAAGAATTTTGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGG
ATGTAGACCTAGGCCCAGAGCTGGCAGGAAGCACACGGTCGTATGATGTC
GGACACTGCGATTTCAATTATTCCCTGGTAAGGTTGTAGTCTTCGTGATG
ATTGAAGATGAAGACCTCATTCTTGTTTTAGAATGAAAAATGAAAAATAA
TACGGCGTGACAGGATAAAGCCTGCGGACTTTCGAGTGAAACTACAAGAA
GGACTACCATAAACCAGATTGGAAACGAACCTCATGGAAAAAGGAATAAA
AAGCACGACACAGGTACGAGAAATTCATCTAATGGCACTCCAATCCCAAT
CAACCAGCTTTTCGTCGGTACACATCGCTGCGACCTCCTTGTCCATACAG
TTGTTTGATGGGGAAAGTCCAAGGCGAAAATTTCGTCTATCATGAAGTAG
GATCTTGGATATTCTATGGTTGGATCCGCAGGCCTTGCATTCCGCATATA
GTATATAACATGTGGGGACATTGCCACTTTTATACTTGCATCGAACATAC
ATAACAAGCAAAAATCCTCTGCGGGTTCAGACTCAGACCAAAGACCAGCT
TCAAAAAATCGTCTTTTGATTGCAAAACTGCCAACGCGAGCCCTTTCGAA
TAGGACATCCCTCTTGGAAGGACGCACATGAAATCCATCCGCCATGCGAA
ATATACTGCTTCAACCATTGTATCCATACTACTTTCCTCCAGAAGTCCAG
TGACGTGGTCGGGGGACAGAACATCGTCATCATCAACGAATGCGAGCCGT
TCCGAGCATTCAATCCTGCTCATCCCATAATTTCGAAGAGTGTAGGCAAA
GTTCGATTCTCCTACTTTGGGAATGGCATGTAAATATTATCTGATCCTCG
GGTCCGATAGGTAGCCAGAAGTCGCAGAAGTTATTTGTTGTTTGCCATAA
AAAACAATCACGTTGTTCGATATGTTGTGGGTTTGAATGAGAAGAGAACT
GTTCGGTCAATAGTATCTCGTCCCTTCGATGGGATTACGAAGGTCACAG

Coding sequence (CDS) from alignment at chr9:1263244..1264692-

>NO09G04230.1 ID=NO09G04230.1|Name=NO09G04230.1|organism=Nannochloropsis oceanica|type=CDS|length=363bp|location=Sequence derived from alignment at chr9:1263244..1264692- (Nannochloropsis oceanica)
ATGTTCGTAGCGGTAAATGAAGTACTTCGCGAGGATGGGCTCGACGGAAT
GGAGTATGGGCTTGCGTTCACGCGGATTGATTTGAAGCGTGTCCTTCTTC
AACATTTGCGCTCGAAGGGAGGAAATGGGACGCCGCTAAGGAGGGCGGCT
GCTGCGACGTCCATTTGGCTAAAGGTCGACGACGGACGAAGAATTTTGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGG
AGGAGGAGGAGGAGGAGGAAGAGGATGTAGACCTAGGCCCAGAGCTGGCA
GGAAGCACACGGTCGTATGATGTCGGACACTGCGATTTCAATTATTCCCT
GGTAAGGTTGTAG

Synonyms

Publications