NO09G03660.1, NO09G03660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03660.1
Unique NameNO09G03660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1336
Alignment locationchr9:1054771..1057281 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1054771..1057281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03660.1 vs.
Match: XP_002499518.1 (vacuolar iron family transporter [Micromonas commoda]; ACO60776.1 vacuolar iron family transporter [Micromonas commoda])

HSP 1 Score: 118.6 bits (296), Expect = 3.800e-23
Identity = 84/236 (35.59%), Postives = 130/236 (55.08%), Query Frame = 0 
Query:  118 HVWRESEFSSYLITGAVGGIFGSLSLACASAGGHVPRHFVALLGVSQSLALSLGMAALHVVMNKEEVAYCQRERRREEWETENYPEGERREMVAIYTSRGGMSPPDATLVIDTLLQYPRFFIDNMVVWELGLLPFTKDFSVLRGTVALFSS-LFAGIIPLLPFCFRPLSSSLPSHLPVYLSAAFAFLLLFGLGVTKARLLDQP--RASTVGVLFGMGTAVAA--ISLGIGAGLGAV 349
            H     ++   L+ G + GI  + ++  AS GG +    + L+G +  +A  L M     + ++ EV Y + E RRE+WE ENYPEGE+REMV +Y  R GM+  DA  VID + +Y  FF+D M+V ELGL+P  +D S  +  V  F+S +F G IPLL +     + +  S +   ++     + +F LG  KA+  +Q   R++ + +L G   AVAA  +S GI + +G V
Sbjct:   44 HAGDAGKYVKSLVFGGLDGIITTFAVVAASVGGSLSSDVILLMGFANLIADGLSMGFGDYLSSQAEVDYTKAEHRREKWELENYPEGEKREMVELYMKR-GMTEEDAVSVIDVMAKYKNFFLDVMMVEELGLMPPDEDDSPWKNGVVTFASFVFFGFIPLLSYVLSSATGASDS-VNFVVACILTGVTMFLLGAAKAKFTNQSMLRSALLMLLNGGMAAVAAYLVSWGIASAMGGV 277
The following BLAST results are available for this feature:
BLAST of NO09G03660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002499518.13.800e-2335.59vacuolar iron family transporter [Micromonas commo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03660NO09G03660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03660.1NO09G03660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03660.1.cds1NO09G03660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03660.1.cds2NO09G03660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03660.1.cds3NO09G03660.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03660.1.cds4NO09G03660.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03660.1.cds5NO09G03660.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03660.1.cds6NO09G03660.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03660.1.cds7NO09G03660.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03660.1 ID=NO09G03660.1|Name=NO09G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1336bp
ATAGGAAATAAATAGAGATCACCAGTCAAGGGGTTGTCAAGGCGCAGCAT
CGCTTTCTGTTGCCTTTTTTGAGTCCTCTCAAACATGGCCGTGGGCAATG
GATCAACAACAGCAGAACTCGAGAGCGGTCTATCGTCGGGCGGTGGGGCA
GCGGAAACTCAGCAACACCACTCGCAGCCCTTGCAGCAGGAGGAAGATAT
CAAAGACAAGGACCCTGAAACGCTGATAAAAATGGCGTTTGCTGCCCAGA
ATGCCAAGCTTTCAAAGGAAGCCCACAACGCCAAGGCGGCGGCATTGTCC
ATGAGCGGCCCTCCATCCTCCTCCCCCACCATGCCCACGGGTGTGCTTCC
TTCCACTTCACTTTCCTCCTCTCCCTCTGCTTTCGCCCCTGGGAAGTCTG
CCCTGCCTTCTACGCCAATGCCCGCTGAAGGCGGGCATGTTTGGAGAGAG
TCCGAATTCTCATCTTACTTGATTACAGGAGCCGTCGGAGGCATTTTCGG
ATCTCTGTCGTTGGCGTGCGCGAGTGCAGGCGGTCACGTCCCTCGTCATT
TTGTCGCCCTGCTGGGGGTGTCGCAGTCCCTGGCACTTTCCCTGGGCATG
GCCGCGCTCCACGTGGTGATGAACAAGGAGGAGGTGGCATACTGCCAACG
AGAGCGACGGCGAGAGGAGTGGGAGACGGAAAACTACCCGGAAGGCGAAA
GGCGTGAGATGGTCGCAATCTACACAAGCAGGGGAGGCATGTCCCCTCCC
GACGCCACACTAGTCATTGACACCCTCCTCCAGTACCCTCGGTTCTTCAT
CGACAACATGGTGGTGTGGGAGCTTGGGCTGCTGCCTTTCACGAAAGATT
TCAGTGTTCTGCGCGGGACTGTCGCTCTATTCTCCTCCCTTTTTGCCGGC
ATCATCCCCTTGCTGCCCTTCTGCTTTCGCCCTCTCTCCTCCTCTTTGCC
TTCCCATCTCCCCGTCTATCTTTCCGCCGCCTTTGCCTTCCTCCTCCTCT
TTGGGCTGGGCGTGACCAAGGCCCGTCTGCTTGACCAGCCGCGTGCTTCC
ACCGTCGGTGTTTTATTCGGAATGGGGACTGCTGTAGCTGCTATTAGTCT
CGGTATCGGTGCCGGGCTCGGCGCAGTGTTGGTTTGAGTGAAAGTGTGAA
AGAAGGAGCGAAAGGAGGGATGGAGGGACAGAGCAACAGCGATGTGTGTA
TAGAACAGAATGAGGTACATCACTGTGAGGAGATGAAGGCGATGAGAGAG
GAGTGAAATGACCACTGAATGATTACAAAGGAGAAAGAAATAAATGCTAA
TAAGTGATGAACAGCGAAACGACGAAGAAAACAGGA
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protein sequence of NO09G03660.1

>NO09G03660.1-protein ID=NO09G03660.1-protein|Name=NO09G03660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MAVGNGSTTAELESGLSSGGGAAETQQHHSQPLQQEEDIKDKDPETLIKM
AFAAQNAKLSKEAHNAKAAALSMSGPPSSSPTMPTGVLPSTSLSSSPSAF
APGKSALPSTPMPAEGGHVWRESEFSSYLITGAVGGIFGSLSLACASAGG
HVPRHFVALLGVSQSLALSLGMAALHVVMNKEEVAYCQRERRREEWETEN
YPEGERREMVAIYTSRGGMSPPDATLVIDTLLQYPRFFIDNMVVWELGLL
PFTKDFSVLRGTVALFSSLFAGIIPLLPFCFRPLSSSLPSHLPVYLSAAF
AFLLLFGLGVTKARLLDQPRASTVGVLFGMGTAVAAISLGIGAGLGAVLV
*
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mRNA from alignment at chr9:1054771..1057281+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03660.1 ID=NO09G03660.1|Name=NO09G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2511bp|location=Sequence derived from alignment at chr9:1054771..1057281+ (Nannochloropsis oceanica)
ATAGGAAATAAATAGAGATCACCAGTCAAGGGGTTGTCAAGGCGCAGCAT
CGCTTTCTGTTGCCTTTTTTGAGTCCTCTCAAACATGGCCGTGGGCAATG
GATCAACAACAGCAGAACTCGAGAGCGGTCTATCGTCGGGCGGTGGGGCA
GCGGAAACTCAGCAACACCACTCGCAGCCCTTGCAGCAGGAGGAAGATAT
CAAAGACAAGGACCCTGAAACGCTGATAAAAATGGTGAGAGGGCCGCCAG
AATGGGGGAGGGAGGGAGTGATGGCATGGGGAGGGGAGGAAGAGAGGGGA
AAGTGGGGGGATCAAGAGAGTGCATGAACTGGTGAATGAAAAAATAGGTG
GCTGCTCCTAGATTTCAGCTCGTTTCGATTTTTCCTACAGTCACACGGAG
TCTGCCTACGTGGACATAGGATGTGAAAGTTGACGTGATGTGTCTCGTAT
CCCATTTCCCCTTCCCTTTGCCTGCCCGGCAACCCCCCTCCCACTCACGC
ACTCCTTCCGCAATCCACAGGCGTTTGCTGCCCAGAATGCCAAGCTTTCA
AAGGAAGCCCACAACGCCAAGGCGGCGGCATTGTCCATGAGGTAGGCAAG
GAGGGGAACGGGGGAGGAAGGTGGGAAGGAGGGAGGGAAAGAGGTAGAGA
GGAAGGACTGGAACTGAGAGATATACTGGAGGGGATGGTACGTTGTTGAC
CATAGAAAAAGGTAGCAGCGTTTGTCGCCATAGCAGACGCAGCAGCCACA
GCAGCAGCAGGCGCAGGAGCTTGTATTTGTTCTCACTTTCCTCTTCACTC
TATCCCTTCACAGCGGCCCTCCATCCTCCTCCCCCACCATGCCCACGGGT
GTGCTTCCTTCCACTTCACTTTCCTCCTCTCCCTCTGCTTTCGCCCCTGG
GAAGTCTGCCCTGCCTTCTACGCCAATGCCCGCTGAAGGCGGGCATGTTT
GGAGAGAGTCCGAATTCTCATCTTACTTGATTACAGGAGCCGTCGGAGGT
GAGGAAGGAGTGAGGCAAGGAGGGAAGGAGGCAAGGAGGGAAGGAGGGAG
GGAAGACGGGAGGAAAAAAAGGTAGGGGGTGCAGGCGGAGGAAATGATCC
CTCTCAAAATTCTAATTATAGCGTCAATTGACTTCTCTCACCTTAAATCA
TAGCCTTGACTAGTTATAATTAAATTCCCCCAAAAATCTAACCATACCCC
TCTTTCCCCCCCCCCTTTTCAATCAGGCATTTTCGGATCTCTGTCGTTGG
CGTGCGCGAGTGCAGGCGGTCACGTCCCTCGTCATTTTGTCGCCCTGCTG
GGGGTGTCGCAGTCCCTGGCACTTTCCCTGGGCATGGCCGCGCTCCACGT
GGTGATGAACAAGGAGGAGGTGGCATACTGCCAACGGTGAGGGAGGAAGA
GTGAGGGAGAGAGAGGGGGAGGGAAAGTAAAATGATGTACTGGATGTGAG
CACGGGGGGAATAATTTTGTCAGTCACACGACCCATTAATCTCCAACCAC
TCCCACGCCCGCACAGAGAGCGACGGCGAGAGGAGTGGGAGACGGAAAAC
TACCCGGAAGGTAAGAAAAAGAAGACATCATGGAATCAAGGAGCGAAGGA
GGGAGGGAGGGAGGGTAAGGCAAGGGGGAGAATAGCGTTAAAAGTTTTGT
AGCTGTACCTCATTTCTGCCTCCTCCCTTCCCCCTTCTCCCTCCCTCCGG
CCCTTCATCCCCTCCTGCAGGCGAAAGGCGTGAGATGGTCGCAATCTACA
CAAGCAGGGGAGGCATGTCCCCTCCCGACGCCACACTAGTCATTGACACC
CTCCTCCAGTACCCTCGGTTCTTCATCGACAACATGGTGGTGTGGGAGCT
TGGGCTGCTGCCTTTCACGAAAGATTTCAGTGTTCTGCGCGGTTAGGAGA
GAGGGAGGGAAGGGAGGAAGGCATTAAGGGAGGGGGAAAAGGAGGGAATG
GGCATGTACTTCGCATCGCCGCTTCAACCGTTGACTTTGAACACTCTTCT
CTCCACTTCCCTCCTATCCTCCATGCTACGCGCGAAACAGGGACTGTCGC
TCTATTCTCCTCCCTTTTTGCCGGCATCATCCCCTTGCTGCCCTTCTGCT
TTCGCCCTCTCTCCTCCTCTTTGCCTTCCCATCTCCCCGTCTATCTTTCC
GCCGCCTTTGCCTTCCTCCTCCTCTTTGGGCTGGGCGTGACCAAGGCCCG
TCTGCTTGACCAGCCGCGTGCTTCCACCGTCGGTGTTTTATTCGGAATGG
GGACTGCTGTAGCTGCTATTAGTCTCGGTATCGGTGCCGGGCTCGGCGCA
GTGTTGGTTTGAGTGAAAGTGTGAAAGAAGGAGCGAAAGGAGGGATGGAG
GGACAGAGCAACAGCGATGTGTGTATAGAACAGAATGAGGTACATCACTG
TGAGGAGATGAAGGCGATGAGAGAGGAGTGAAATGACCACTGAATGATTA
CAAAGGAGAAAGAAATAAATGCTAATAAGTGATGAACAGCGAAACGACGA
AGAAAACAGGA
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Coding sequence (CDS) from alignment at chr9:1054771..1057281+

>NO09G03660.1 ID=NO09G03660.1|Name=NO09G03660.1|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at chr9:1054771..1057281+ (Nannochloropsis oceanica)
ATGGCCGTGGGCAATGGATCAACAACAGCAGAACTCGAGAGCGGTCTATC
GTCGGGCGGTGGGGCAGCGGAAACTCAGCAACACCACTCGCAGCCCTTGC
AGCAGGAGGAAGATATCAAAGACAAGGACCCTGAAACGCTGATAAAAATG
GCGTTTGCTGCCCAGAATGCCAAGCTTTCAAAGGAAGCCCACAACGCCAA
GGCGGCGGCATTGTCCATGAGCGGCCCTCCATCCTCCTCCCCCACCATGC
CCACGGGTGTGCTTCCTTCCACTTCACTTTCCTCCTCTCCCTCTGCTTTC
GCCCCTGGGAAGTCTGCCCTGCCTTCTACGCCAATGCCCGCTGAAGGCGG
GCATGTTTGGAGAGAGTCCGAATTCTCATCTTACTTGATTACAGGAGCCG
TCGGAGGCATTTTCGGATCTCTGTCGTTGGCGTGCGCGAGTGCAGGCGGT
CACGTCCCTCGTCATTTTGTCGCCCTGCTGGGGGTGTCGCAGTCCCTGGC
ACTTTCCCTGGGCATGGCCGCGCTCCACGTGGTGATGAACAAGGAGGAGG
TGGCATACTGCCAACGAGAGCGACGGCGAGAGGAGTGGGAGACGGAAAAC
TACCCGGAAGGCGAAAGGCGTGAGATGGTCGCAATCTACACAAGCAGGGG
AGGCATGTCCCCTCCCGACGCCACACTAGTCATTGACACCCTCCTCCAGT
ACCCTCGGTTCTTCATCGACAACATGGTGGTGTGGGAGCTTGGGCTGCTG
CCTTTCACGAAAGATTTCAGTGTTCTGCGCGGGACTGTCGCTCTATTCTC
CTCCCTTTTTGCCGGCATCATCCCCTTGCTGCCCTTCTGCTTTCGCCCTC
TCTCCTCCTCTTTGCCTTCCCATCTCCCCGTCTATCTTTCCGCCGCCTTT
GCCTTCCTCCTCCTCTTTGGGCTGGGCGTGACCAAGGCCCGTCTGCTTGA
CCAGCCGCGTGCTTCCACCGTCGGTGTTTTATTCGGAATGGGGACTGCTG
TAGCTGCTATTAGTCTCGGTATCGGTGCCGGGCTCGGCGCAGTGTTGGTT
TGA
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Synonyms
Publications