NO09G03310.1, NO09G03310.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G03310.1
Unique Name	NO09G03310.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2841
Alignment location	chr9:950461..954324 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:950461..954324 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO09G03310.1 vs.
Match: EWM27463.1 (mitochondrial tricarboxylate transport protein [Nannochloropsis gaditana])

HSP 1 Score: 529.3 bits (1362), Expect = 8.200e-147
Identity = 261/308 (84.74%), Postives = 286/308 (92.86%), Query Frame = 0

Query:    2 SSSTTAAASIVPLAASTSA---TKKKPTQMISLMAGSIAGGIEATCVWPMEFIKTQLQLQEKLPAGEKPKFTGMIGGMRYTVANHGFLALYRGLTPTLISAFPKAGIRFGSNAYFKKMLMDENGKLTPGKNFLAGVGAGTIESIFVVTPVETVKTKLIHLNMEFVGGVKHIVAKEGLSGVYQGLGATIMKQGSNQGLRFMFFNEYKNWITDNGKVPLTPITSFLGGMSAGCFSTLCNNPLDVIKTRMQGLDAAKYSNALDCARQLTKTEGFGVFLRGLVPRLGRVVPGQGIIFMSFESIQNKLVEVLL 307
            + +TTAA  +VP+  STSA   +KKKPTQ+ISL+AG+IAGG+EATCVWPME+IKTQLQLQE+LPAGEKPKFTGMI GMRYTV NHGFLALYRGLTPTLISAFPKAGIRFGSNAYFKK LMD+ GKLTPGKNFLAGVGAG IESIFVVTPVETVKTKLIHLNM F GGVKHIVA EG++GVYQGLGATIMKQGSNQGLRFMFFNEYKNW+T+NG+  LTP+TSFLGGMSAGCFSTLCNNPLDVIKTRMQGLDAAKY NALDCA+QL + EG GVFL+GL+PRLGRVVPGQGIIFMSFE+IQNKLV++LL
Sbjct:   28 ADATTAAVPLVPVPISTSAISPSKKKPTQVISLLAGAIAGGMEATCVWPMEYIKTQLQLQERLPAGEKPKFTGMISGMRYTVQNHGFLALYRGLTPTLISAFPKAGIRFGSNAYFKKQLMDDQGKLTPGKNFLAGVGAGIIESIFVVTPVETVKTKLIHLNMSFFGGVKHIVAHEGMAGVYQGLGATIMKQGSNQGLRFMFFNEYKNWVTNNGQHNLTPLTSFLGGMSAGCFSTLCNNPLDVIKTRMQGLDAAKYKNALDCAQQLMRHEGAGVFLKGLIPRLGRVVPGQGIIFMSFETIQNKLVDILL 335

The following BLAST results are available for this feature:

BLAST of NO09G03310.1 vs.

BLAST of NO09G03310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27463.1	8.200e-147	84.74	mitochondrial tricarboxylate transport protein [Na...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G03310	NO09G03310	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G03310.1	NO09G03310.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G03310.1.cds1	NO09G03310.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G03310.1.cds2	NO09G03310.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G03310.1.cds3	NO09G03310.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G03310.1.cds4	NO09G03310.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G03310.1.cds5	NO09G03310.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G03310.1.cds6	NO09G03310.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:950461..954324-
coding sequence from alignment at chr9:950461..954324-

mRNA sequence

>NO09G03310.1 ID=NO09G03310.1|Name=NO09G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2841bp
AAGACAGGCTCGCAACTCCTCGCCCACCATGTCCAGCTCGACGACTGCCG
CGGCCTCGATTGTGCCTTTGGCGGCATCAACGTCCGCAACCAAGAAAAAG
CCCACCCAGATGATTTCCCTCATGGCGGGCTCCATTGCCGGCGGCATCGA
GGCTACCTGCGTATGGCCGATGGAGTTCATCAAGACACAGCTTCAGTTGC
AGGAAAAGCTGCCCGCGGGGGAGAAGCCCAAGTTTACGGGCATGATCGGG
GGTATGCGATATACGGTGGCAAATCACGGGTTCTTGGCGCTCTATCGGGG
GCTGACCCCGACGCTGATCAGCGCCTTCCCCAAGGCCGGTATCCGTTTTG
GCTCTAACGCTTACTTCAAAAAGATGTTGATGGACGAGAACGGGAAACTG
ACCCCGGGCAAGAATTTCTTGGCGGGCGTAGGCGCTGGCACCATCGAGAG
TATTTTTGTCGTGACTCCCGTCGAGACAGTAAAGACCAAGCTCATCCACT
TGAACATGGAATTCGTGGGAGGGGTGAAGCACATCGTGGCTAAGGAAGGG
CTGTCGGGCGTGTACCAGGGCCTGGGCGCCACCATCATGAAGCAGGGCTC
CAATCAAGGGCTGCGATTCATGTTCTTCAACGAGTACAAGAACTGGATTA
CAGACAACGGCAAGGTGCCTCTCACGCCCATCACCTCCTTCCTCGGCGGC
ATGTCGGCGGGTTGCTTCTCTACCCTCTGCAACAACCCCTTGGACGTGAT
CAAGACGCGCATGCAGGGCCTGGATGCAGCCAAGTACAGCAATGCCTTGG
ATTGCGCGCGACAGCTGACCAAAACCGAAGGTTTCGGAGTGTTTCTCCGG
GGACTGGTGCCGCGGCTGGGGAGGGTTGTGCCTGGGCAAGGGATTATTTT
TATGTCCTTCGAGAGCATTCAGAACAAGCTGGTTGAGGTGTTGTTGTGAG
GAGGGGAGGGAAACAGGGAGGGAAGGAGAAGTGAAGTGTAACCTATTGAT
TTTATGTATTTGAAAAGAGCAAGGTCATGTAGTGAGAGGAGGGCTGGTGG
AAAGACAGTGACGAGCCGATCTAAGGAGGGCAGGAGGAGAAAGAGGAGCA
AAAAGAAGAAATAGAGTGGGAGGAGGAGAGGAGAACAAGGAGAAGAAGTG
GCGGAGGGACTAGGAAATAGTGTGGCGTGAATGTGGTGCGTCACAAAGAT
AGGTGTGCGTTTATGTGTATGTGTGTATGTGTGTATGTGGGTGTGGGGGG
GGGTTAAGGTTTGGATCCGGGTCGCGCGTCACCGCCTGCCTGCCTGCTGC
CGCTCCTGCCGACAAGTCGATTTCGTGAATGCCGCTGTTGTCGGCATATA
TGCGTGTGCATGTGTGTGTGTCTTCCCAGCCGTGCGGGTGTGTGGCCGGG
GGAATGGAGCCCGTGGCGACGAGAAGTTAAATCACGGTTAGAAGAAGGAA
GGGAGGAGGGGGAAGGAAGGGGGTGAGGAAGGAAGGAAGGAAGGAAGGAA
GGAAGGGAGAGGAGCCTACATGACGCCACAAAATGAAATCAAGGCATTCT
ATGAAAGCACGATTGGGGAGATTTGATGGATGGCGGCTGACTATAGGCGT
CTTACAGGGGGTATCTGATCGAAGGCAGATCGAAAAAGCAACTCAGCAAA
AATGAAGATGAATAGGAGGAAGAGAAGGGAGTCATTTCCATTCACGAAGA
GAAAAAGAAAATAACTCAAACGTTTGAATGCTCAAGGATTTGTAACTGCC
TCCATGCGTGTGGTTTGTGGGACTTTTCTTGCCGTTTCACGCACTTATGC
GTACCCATTTTATACACCAATAGTACCGATTGCAGGCGCTGGTGCGGTTG
CTGCTGCATCTGCTGCTCCTTCTGCTGATGAAGGTGACGTAATTGGTGGA
TTGGGACGCTGCTTCTGGCTCGGTGTATTTCCTCTTGTTGCTGGCTTTGA
TACCTCCTGTCGCCATTCTCATCGACGCTCACTATATCTAGAGTATATGT
AAATAAAGATACATTAATCTTCTCTGCTAGTGTACATACACATATGTATA
GAGTGTCAGTTTTTTTTCAGTCGCTCTCCCATTTCCCCTTCTGACGATTT
TTCTTCCCTTTTCTCTGTGCTGGGGTCGTCCTCCCGTCTCTATTTTTCCT
CAACATCTTGGCTCATAGGTCTCCTTCTCTTACATTCTCTTCACAGTCAA
TTGTAACACTTCCACAGCACTATTTCACTATCAGATGAGTCATTCCTTCA
TCGTATTCCCTTTGTTCCCTCCCTTTGCTTTCGCTACTCTGCTCAGTTTT
CGTGCTTCTGGATATCCTTTTTGCTATTCGGTCCTGCCTTTGATATAAGG
CTGCCTTCAAGCTTTCTCCCTCTTCTCTCCAAGTAATAAACATATAAGAT
ACAACGGAAACTGACAATTCAGCAGTACCTAGTCTGCAATAAGGCCTTTG
GTGTTCTATCTCTCTCCTACTCCTCCTCCTACTCCTCCTCCTCCTCATTC
ATGCACCGCTTCTTTCTTCTTATGACAGGGATTTCCCTCTCTGGAGTACT
TCTCACCCGAGTAAGAATAACAATGGATGACAATGCGATCCCTCTGATTC
CACCTACCTATATCATCTGCTGCTGGGGCAAGTAAAATGAAGGAGGTCCC
GCCACTTCTCCTCATTCTCTGCTACCTATGAATCTCCTCCCCTCCCCTTC
CTCGTTTTTATCCTTTACTTGGAGGTTTACAACGATACAAGTGATATCGT
CGATCATTTGCGGCGACACCCTCTTCCACCGTTTCCTCGCAATTCTCACC
AAAGCTATCGCCGCCTCCTTTGCATCCCACTCCCCTCCCTC

protein sequence of NO09G03310.1

>NO09G03310.1-protein ID=NO09G03310.1-protein|Name=NO09G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MSSSTTAAASIVPLAASTSATKKKPTQMISLMAGSIAGGIEATCVWPMEF
IKTQLQLQEKLPAGEKPKFTGMIGGMRYTVANHGFLALYRGLTPTLISAF
PKAGIRFGSNAYFKKMLMDENGKLTPGKNFLAGVGAGTIESIFVVTPVET
VKTKLIHLNMEFVGGVKHIVAKEGLSGVYQGLGATIMKQGSNQGLRFMFF
NEYKNWITDNGKVPLTPITSFLGGMSAGCFSTLCNNPLDVIKTRMQGLDA
AKYSNALDCARQLTKTEGFGVFLRGLVPRLGRVVPGQGIIFMSFESIQNK
LVEVLL*

mRNA from alignment at chr9:950461..954324-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G03310.1 ID=NO09G03310.1|Name=NO09G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3864bp|location=Sequence derived from alignment at chr9:950461..954324- (Nannochloropsis oceanica)
AAGACAGGCTCGCAACTCCTCGCCCACCATGTCCAGCTCGACGACTGCCG
CGGCCTCGATTGTGCCTTTGGCGGCATCAACGTCCGCAACCAAGAAAAAG
CCCACCCAGATGATTTCCCTCATGGCGGGCTCCATTGCCGGCGGTACGTC
TTGTAGCTTCGTGTTGGCCAACGCGAGGGGACGACAGGCAGTGAGGGAGG
CACCACGTGCTGTACGAAACGAAGGGTTTACGATTCGTGAGGCAGGGTCT
ACGCAGCGACTTGTACCATTCATGCATGATTTCGGAATGCTGGGGGCATG
GACAACTGTACTGATCCCTCTTCGTTCCTCGGTCCGTTTCTTTCTCCTAC
ACACGTTCTGATTATTTTTAACAGGCATCGAGGCTACCTGCGTATGGCCG
ATGGAGTTCATCAAGACACAGCTTCAGTTGCAGGAAAAGCTGCCCGCGGG
GGAGAAGCCCAAGTTTACGGGCATGATCGGGGGTAAGGACATGGGGGCAG
GCAGAGAGGAGCTAGGGAGGGAGGGCGGGCGGGCGGGATGGTAGGAGAAG
ATGTGCGATTCGCTCGAAGGGAAGAGAACCAATGGACAACACATACATAT
ATGCACATAGGTATACCGAAAAAAGCCTGCCTTCATCGCGCACCCACCTT
TCCTTTCTACTCTCGTCTCCCTCTTGCCACCCTCTCTCCCAGGTATGCGA
TATACGGTGGCAAATCACGGGTTCTTGGCGCTCTATCGGGGGCTGACCCC
GACGCTGATCAGCGCCTTCCCCAAGGCCGGTATCCGTTTTGGCTCTAACG
CTTACTTCAAAAAGATGTTGATGGACGAGAACGGGAAACTGACCCCGGGC
AAGAATTTCTTGGCGGGCGTAGGCGCTGGTGAGCTAAGAGAGGGAGGGAG
GGAGGGCGGGAGGGAGGTGATGAGAAAAGGGTCAAGTGCGACTGCATGCG
TTGACTTTGAGATTAGCGAGCTGTTTTCGAGCTTCTCCACCGCATGGAAG
ATGTGAGTGGCTTTCATTTGAAAATAACCTGTCATGGCTTACTCACTCTT
ACTCTCCCCTTTCCTCCCTCCCTCCTTGCCTCCCTCAGGCACCATCGAGA
GTATTTTTGTCGTGACTCCCGTCGAGACAGTAAAGACCAAGCTCATCCAC
TTGAACATGGAATTCGTGGGAGGGGTGAAGCACATCGTGGCTAAGGAAGG
GCTGTCGGGCGTGTACCAGGTGAGGAGGGAAGGAGGGAGGATGGGAGGAA
AGGAGGGAGGGAGAGAGTTCGAGTATTTGGAGTGTCTAGCAAAGGAAGAG
CCGAAGGGCTTGTTTTGCATCGAAAGAGGGAGGAAGTGAGAGGGGGATGG
AGAGAGGAGAGGCCTTATATCAGCGGCTCCGTAGATGATTATCATGTCTC
ACCCTCCCTTCTTCCCTACCTCCCCTCTCCCTCTTTCCCTCCTCAGGGCC
TGGGCGCCACCATCATGAAGCAGGGCTCCAATCAAGGGCTGCGATTCATG
TTCTTCAACGAGTACAAGAACTGGATTACAGACAACGGCAAGGTGCCTCT
CACGCCCATCACCTCCTTCCTCGGCGGCATGTCGGCGGGTTGCTTCTCTA
CCCTCTGCAACAACCCCTTGGGTGAGTACGCCCGCCCTCCCTCCCTCCCT
CCCTCCCTTTCTGCCTGCCCGCCCATTTTCCTCGCTTGCCTTTCTCTCAC
TTGGAAAGCGCCCTCCACGAAACCCGACCAATCACTCCCTCCCCCCCGCC
CTCCCTCCCCCCCTAGACGTGATCAAGACGCGCATGCAGGGCCTGGATGC
AGCCAAGTACAGCAATGCCTTGGATTGCGCGCGACAGCTGACCAAAACCG
AAGGTTTCGGAGTGTTTCTCCGGGGACTGGTGCCGCGGCTGGGGAGGGTT
GTGCCTGGGCAAGGGATTATTTTTATGTCCTTCGAGAGCATTCAGAACAA
GCTGGTTGAGGTGTTGTTGTGAGGAGGGGAGGGAAACAGGGAGGGAAGGA
GAAGTGAAGTGTAACCTATTGATTTTATGTATTTGAAAAGAGCAAGGTCA
TGTAGTGAGAGGAGGGCTGGTGGAAAGACAGTGACGAGCCGATCTAAGGA
GGGCAGGAGGAGAAAGAGGAGCAAAAAGAAGAAATAGAGTGGGAGGAGGA
GAGGAGAACAAGGAGAAGAAGTGGCGGAGGGACTAGGAAATAGTGTGGCG
TGAATGTGGTGCGTCACAAAGATAGGTGTGCGTTTATGTGTATGTGTGTA
TGTGTGTATGTGGGTGTGGGGGGGGGTTAAGGTTTGGATCCGGGTCGCGC
GTCACCGCCTGCCTGCCTGCTGCCGCTCCTGCCGACAAGTCGATTTCGTG
AATGCCGCTGTTGTCGGCATATATGCGTGTGCATGTGTGTGTGTCTTCCC
AGCCGTGCGGGTGTGTGGCCGGGGGAATGGAGCCCGTGGCGACGAGAAGT
TAAATCACGGTTAGAAGAAGGAAGGGAGGAGGGGGAAGGAAGGGGGTGAG
GAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGAGGAGCCTACATGACGCC
ACAAAATGAAATCAAGGCATTCTATGAAAGCACGATTGGGGAGATTTGAT
GGATGGCGGCTGACTATAGGCGTCTTACAGGGGGTATCTGATCGAAGGCA
GATCGAAAAAGCAACTCAGCAAAAATGAAGATGAATAGGAGGAAGAGAAG
GGAGTCATTTCCATTCACGAAGAGAAAAAGAAAATAACTCAAACGTTTGA
ATGCTCAAGGATTTGTAACTGCCTCCATGCGTGTGGTTTGTGGGACTTTT
CTTGCCGTTTCACGCACTTATGCGTACCCATTTTATACACCAATAGTACC
GATTGCAGGCGCTGGTGCGGTTGCTGCTGCATCTGCTGCTCCTTCTGCTG
ATGAAGGTGACGTAATTGGTGGATTGGGACGCTGCTTCTGGCTCGGTGTA
TTTCCTCTTGTTGCTGGCTTTGATACCTCCTGTCGCCATTCTCATCGACG
CTCACTATATCTAGAGTATATGTAAATAAAGATACATTAATCTTCTCTGC
TAGTGTACATACACATATGTATAGAGTGTCAGTTTTTTTTCAGTCGCTCT
CCCATTTCCCCTTCTGACGATTTTTCTTCCCTTTTCTCTGTGCTGGGGTC
GTCCTCCCGTCTCTATTTTTCCTCAACATCTTGGCTCATAGGTCTCCTTC
TCTTACATTCTCTTCACAGTCAATTGTAACACTTCCACAGCACTATTTCA
CTATCAGATGAGTCATTCCTTCATCGTATTCCCTTTGTTCCCTCCCTTTG
CTTTCGCTACTCTGCTCAGTTTTCGTGCTTCTGGATATCCTTTTTGCTAT
TCGGTCCTGCCTTTGATATAAGGCTGCCTTCAAGCTTTCTCCCTCTTCTC
TCCAAGTAATAAACATATAAGATACAACGGAAACTGACAATTCAGCAGTA
CCTAGTCTGCAATAAGGCCTTTGGTGTTCTATCTCTCTCCTACTCCTCCT
CCTACTCCTCCTCCTCCTCATTCATGCACCGCTTCTTTCTTCTTATGACA
GGGATTTCCCTCTCTGGAGTACTTCTCACCCGAGTAAGAATAACAATGGA
TGACAATGCGATCCCTCTGATTCCACCTACCTATATCATCTGCTGCTGGG
GCAAGTAAAATGAAGGAGGTCCCGCCACTTCTCCTCATTCTCTGCTACCT
ATGAATCTCCTCCCCTCCCCTTCCTCGTTTTTATCCTTTACTTGGAGGTT
TACAACGATACAAGTGATATCGTCGATCATTTGCGGCGACACCCTCTTCC
ACCGTTTCCTCGCAATTCTCACCAAAGCTATCGCCGCCTCCTTTGCATCC
CACTCCCCTCCCTC

Coding sequence (CDS) from alignment at chr9:950461..954324-

>NO09G03310.1 ID=NO09G03310.1|Name=NO09G03310.1|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at chr9:950461..954324- (Nannochloropsis oceanica)
ATGTCCAGCTCGACGACTGCCGCGGCCTCGATTGTGCCTTTGGCGGCATC
AACGTCCGCAACCAAGAAAAAGCCCACCCAGATGATTTCCCTCATGGCGG
GCTCCATTGCCGGCGGCATCGAGGCTACCTGCGTATGGCCGATGGAGTTC
ATCAAGACACAGCTTCAGTTGCAGGAAAAGCTGCCCGCGGGGGAGAAGCC
CAAGTTTACGGGCATGATCGGGGGTATGCGATATACGGTGGCAAATCACG
GGTTCTTGGCGCTCTATCGGGGGCTGACCCCGACGCTGATCAGCGCCTTC
CCCAAGGCCGGTATCCGTTTTGGCTCTAACGCTTACTTCAAAAAGATGTT
GATGGACGAGAACGGGAAACTGACCCCGGGCAAGAATTTCTTGGCGGGCG
TAGGCGCTGGCACCATCGAGAGTATTTTTGTCGTGACTCCCGTCGAGACA
GTAAAGACCAAGCTCATCCACTTGAACATGGAATTCGTGGGAGGGGTGAA
GCACATCGTGGCTAAGGAAGGGCTGTCGGGCGTGTACCAGGGCCTGGGCG
CCACCATCATGAAGCAGGGCTCCAATCAAGGGCTGCGATTCATGTTCTTC
AACGAGTACAAGAACTGGATTACAGACAACGGCAAGGTGCCTCTCACGCC
CATCACCTCCTTCCTCGGCGGCATGTCGGCGGGTTGCTTCTCTACCCTCT
GCAACAACCCCTTGGACGTGATCAAGACGCGCATGCAGGGCCTGGATGCA
GCCAAGTACAGCAATGCCTTGGATTGCGCGCGACAGCTGACCAAAACCGA
AGGTTTCGGAGTGTTTCTCCGGGGACTGGTGCCGCGGCTGGGGAGGGTTG
TGCCTGGGCAAGGGATTATTTTTATGTCCTTCGAGAGCATTCAGAACAAG
CTGGTTGAGGTGTTGTTGTGA

Synonyms

Publications