NO09G02990.1, NO09G02990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02990.1
Unique NameNO09G02990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length789
Alignment locationchr9:875779..877021 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:875779..877021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G02990.1 vs.
Match: EWM27490.1 (hypothetical protein Naga_100099g5 [Nannochloropsis gaditana])

HSP 1 Score: 109.8 bits (273), Expect = 9.500e-21
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0
Query:  120 IYNAGNPDLPPPYYAVAFALVLLVVSGIQQLSLGNVFDEEEKSASSSGAVARRMALRNRSFFK 183
            +YN  N +LPPPYYAVAFALVLLVVSGIQQLSLGNVFD+EEKSASSSGAVARRM +RNRSFFK
Sbjct:  148 VYNGVNTELPPPYYAVAFALVLLVVSGIQQLSLGNVFDDEEKSASSSGAVARRMNMRNRSFFK 210          
The following BLAST results are available for this feature:
BLAST of NO09G02990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27490.19.500e-2187.30hypothetical protein Naga_100099g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02990NO09G02990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02990.1NO09G02990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02990.1.cds1NO09G02990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02990.1.cds2NO09G02990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02990.1.cds3NO09G02990.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02990.1 ID=NO09G02990.1|Name=NO09G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=789bp
CAGAACCATCGTCGCGCCTCGTCGTCTTGTCGCCTTGTCAACCCCCAGCA
CCCACCATCATCATCATGCTTCAACGGGCAGGTAAACTTGCGGTGGGAGC
CCTCCTGCTTCTCGTCTGCGTCGTCTTGTCCACGCAAGCCTTTGTCTTAC
CCAGCTGTAGCCGCTTCATCACCAGCAGTCGAAGCACCCGAAGATTGTCC
AAGGCTAGGGACGGGGTCAAGATGATGCTGCTTCCGCCCGAAGCGCCCCA
GTCGTTCCTCTCCTCCTCTGCAGGCCTCATGGTTGCTGTGTCCCGTTTCG
TGAAGGACGTGCCTTCCACGCTAACAGACATGGCGGACGGGGCCGCTGAT
GCCGTTGGAGCTACTGCCACGGGCACCAACGCTGATGGCTCCTACACGAA
TGCGGGAGAAGCAGTCGAGGAGATCTACAATGCGGGCAACCCCGACTTGC
CCCCTCCTTATTACGCCGTGGCCTTTGCGTTGGTCCTATTGGTGGTCTCG
GGTATTCAGCAATTGTCTTTAGGCAATGTTTTTGACGAGGAGGAGAAATC
TGCCTCGTCTAGTGGCGCGGTGGCTCGTCGGATGGCCCTGCGAAATCGTA
GTTTTTTCAAGGGGGGGAAGAAGAAGTAGAGAGGGCATGAGAATTGAGAG
CTGAGAGGGGTGTACAGATGGGAGGAAGACAGACAGGAGGTTAATTGGAG
GGCGTGGTCGAAAGAATCAAGAGAAGACGAGAATTTACGAAGCGTTTCCA
AGAAGGCAAAGAAGGAAACAACCAAATGTCAGAATCCTG
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protein sequence of NO09G02990.1

>NO09G02990.1-protein ID=NO09G02990.1-protein|Name=NO09G02990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MLQRAGKLAVGALLLLVCVVLSTQAFVLPSCSRFITSSRSTRRLSKARDG
VKMMLLPPEAPQSFLSSSAGLMVAVSRFVKDVPSTLTDMADGAADAVGAT
ATGTNADGSYTNAGEAVEEIYNAGNPDLPPPYYAVAFALVLLVVSGIQQL
SLGNVFDEEEKSASSSGAVARRMALRNRSFFKGGKKK*
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mRNA from alignment at chr9:875779..877021+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02990.1 ID=NO09G02990.1|Name=NO09G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp|location=Sequence derived from alignment at chr9:875779..877021+ (Nannochloropsis oceanica)
CAGAACCATCGTCGCGCCTCGTCGTCTTGTCGCCTTGTCAACCCCCAGCA CCCACCATCATCATCATGCTTCAACGGGCAGGTAAACTTGCGGTGGGAGC CCTCCTGCTTCTCGTCTGCGTCGTCTTGTCCACGCAAGCCTTTGTCTTAC CCAGCTGTAGCCGCTTCATCACCAGCAGTCGAAGCACCCGAAGATTGTCC AAGGCTAGGGACGGGGTCAAGATGATGCTGCTTCCGCCCGAAGCGCCCCA GTCGTTCCTCTCCTCCTCTGCAGGCCTCATGGTATGTGTATAATTTGCGT TCGTGGTGTGGAGGGGAGAGGATGTGAAGTGAAGGCTCAGATAAGCAACG CAGGTTTGTTGTATTGAGAATGCTGGTTTGCTTGCTGTTTTTATGGTCAT TCGCATCCGCCCGCACAGAGGAAGGGTGGAAGACACCACGCTCGAAAAGG ACGGCAGATTAGCACCCCTCCAACAGTGTCATTATCGTTGGTCTGCTACG ATGGTATTCACAGTCCCTCATTCCGACCCCTCTTCTATACCTATCTGCCT TTCTTGTACAGGTTGCTGTGTCCCGTTTCGTGAAGGACGTGCCTTCCACG CTAACAGACATGGCGGACGGGGCCGCTGATGCCGTTGGAGCTACTGCCAC GGGCACCAACGCTGATGGCTCCTACACGAATGCGGGAGAAGCAGTCGAGG TATGTGCATTACCTGGCCTTCGGTGCGGTTTGTGGCTCTTCTCCTGTCCT GTAATGTGCTGGCGTTGACATAGGCATGTGCTTACGCCTCAGCCTTCACA TATTCTCTGCCCTCCTCATCTTTTTTCACTTACACATGTCTATTGAACGT ATATTACTACTGCACATATACAGGAGATCTACAATGCGGGCAACCCCGAC TTGCCCCCTCCTTATTACGCCGTGGCCTTTGCGTTGGTCCTATTGGTGGT CTCGGGTATTCAGCAATTGTCTTTAGGCAATGTTTTTGACGAGGAGGAGA AATCTGCCTCGTCTAGTGGCGCGGTGGCTCGTCGGATGGCCCTGCGAAAT CGTAGTTTTTTCAAGGGGGGGAAGAAGAAGTAGAGAGGGCATGAGAATTG AGAGCTGAGAGGGGTGTACAGATGGGAGGAAGACAGACAGGAGGTTAATT GGAGGGCGTGGTCGAAAGAATCAAGAGAAGACGAGAATTTACGAAGCGTT TCCAAGAAGGCAAAGAAGGAAACAACCAAATGTCAGAATCCTG
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Coding sequence (CDS) from alignment at chr9:875779..877021+

>NO09G02990.1 ID=NO09G02990.1|Name=NO09G02990.1|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at chr9:875779..877021+ (Nannochloropsis oceanica)
ATGCTTCAACGGGCAGGTAAACTTGCGGTGGGAGCCCTCCTGCTTCTCGT
CTGCGTCGTCTTGTCCACGCAAGCCTTTGTCTTACCCAGCTGTAGCCGCT
TCATCACCAGCAGTCGAAGCACCCGAAGATTGTCCAAGGCTAGGGACGGG
GTCAAGATGATGCTGCTTCCGCCCGAAGCGCCCCAGTCGTTCCTCTCCTC
CTCTGCAGGCCTCATGGTTGCTGTGTCCCGTTTCGTGAAGGACGTGCCTT
CCACGCTAACAGACATGGCGGACGGGGCCGCTGATGCCGTTGGAGCTACT
GCCACGGGCACCAACGCTGATGGCTCCTACACGAATGCGGGAGAAGCAGT
CGAGGAGATCTACAATGCGGGCAACCCCGACTTGCCCCCTCCTTATTACG
CCGTGGCCTTTGCGTTGGTCCTATTGGTGGTCTCGGGTATTCAGCAATTG
TCTTTAGGCAATGTTTTTGACGAGGAGGAGAAATCTGCCTCGTCTAGTGG
CGCGGTGGCTCGTCGGATGGCCCTGCGAAATCGTAGTTTTTTCAAGGGGG
GGAAGAAGAAGTAG
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Synonyms
Publications