NO09G01820.1, NO09G01820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01820.1
Unique NameNO09G01820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2428
Alignment locationchr9:557292..560230 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:557292..560230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01820.1 vs.
Match: EWM27603.1 (Micro-fibrillar-associated 1 [Nannochloropsis gaditana])

HSP 1 Score: 434.1 bits (1115), Expect = 7.000e-118
Identity = 256/369 (69.38%), Postives = 294/369 (79.67%), Query Frame = 0 
Query:  237 EVGGVEEE---DGPVDEDDEDAIARRRAAIRERLKNLQMEEKAAAAAGGGARADAKPESDTEEDEDGGEDEDDDSEYETDSDDESEEEGGGGGGLFALPRPVFIPKHKRELVQQREQEEREEAEKESKAVLAKERRIRDTRNLVAEEVRKEAEGAAALEGGGEDGYGSDEGAPDDTDRPEEDALEFENWRLRELGRVKRDKEMREARAREKMEVARRRAMTEGERDAEDRRLGRGVYAKP--EVQKTKRRFMQKYYHKGAFYMDEESIREKDDVRRRAADDATGEDKFNRAALPQVMQVKKFGRAGQTKYTHLLDQDTTRAEKHKTGSVWQQRDQDKRQGVVGEAKNRFAHKLGGTGDIDSAGRRKKQG 601
            +VG  EEE   +   DE++EDAIARRRAAIRERLK+L++EE+AA AA              EE+E+  E+E++DSEYE +S++  EE  GG   LFAL RPVFIPK KREL + RE+EE+EE EKE KA  A+E R R+TR +VAEEVRKE+EGA   EG  E GYGSD GAPDD+DRPEEDALEFENWRLREL R+KR+ E R+AR ++K EVARRR MTE ERDAEDRRLG GVYAK   + +K K +FMQKYYHKGAFYMDEES+   DDVRRRAAD+ATGEDKFNRAALP VMQVK FGRAGQTKYTHLLDQDTTRAEKHKTGSVWQQ DQDKR G+VG+AKN+F HKL GTGDID AGRRKK+G
Sbjct:   31 DVGKKEEEPVEEDEEDEEEEDAIARRRAAIRERLKSLRVEEEAATAAA------------EEEEEEAEEEEEEDSEYEEESEESEEERAGG---LFALARPVFIPKGKRELDRDREREEQEEVEKERKAAAARESRRRETRLMVAEEVRKESEGAVGSEGAME-GYGSDAGAPDDSDRPEEDALEFENWRLRELARMKREMEARQAREKDKAEVARRRGMTEAERDAEDRRLGVGVYAKQGGKGEKAKWKFMQKYYHKGAFYMDEESVARPDDVRRRAADEATGEDKFNRAALPSVMQVKNFGRAGQTKYTHLLDQDTTRAEKHKTGSVWQQMDQDKRFGMVGDAKNKFVHKLAGTGDIDQAGRRKKKG 383
The following BLAST results are available for this feature:
BLAST of NO09G01820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27603.17.000e-11869.38Micro-fibrillar-associated 1 [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01820NO09G01820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01820.1NO09G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01820.1.cds1NO09G01820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01820.1.cds2NO09G01820.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01820.1.cds3NO09G01820.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01820.1 ID=NO09G01820.1|Name=NO09G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2428bp
GATTTAACAAACAAGGCTCACCAATTGAGCTCTTTGATTTTAAGACTTTC
TTACTTTCTTACGCGCTACCGGGCTTTCCACTACGCGGCGACTTTTTGTA
AAGCGCGTTACACTACCAAGATATAGAAAGGATGGAATGCGGGGTTCAGT
TGTGAGTCCCAAAAAGGGTTGCGAGCGATGGGGAGGTCGTTGTCGACAAG
CACTACACACCCGGAAGTGAAGTCTTCCTTCCGTCTAGCGCGGCACCACA
CCATCCACTCACGGCGCATCTTTCACTTTTCATCTCCCACACACAAATCA
TGCCTGGACAGAAGCGACGCGGAGGACGATCTCGATTGCCTGCCAGAGCG
TGCGGCTTCGTCCGCGGCATCATCATCCCGTCAGCCTTCCTTCTTAGCTA
GGAGCCACAAGGCAAGGCCAAAACCATGTTTAGCAAGCGTGACCTGGGCC
TCGCCCTGTCGGACAAGATCGAAGACAACGTGCTCACGCACACGCATGAC
GATACTGCCACCGATGTCACCGACCATGCCCTTCGTGTCAAGCGGGATCC
CACACGCAAGGTGCAACGACTGAGGCCCGGGGAGATGCCTGCATGGGTGG
GCGAGGCAGAGGAAGAGGAAGGCTTTGCGGCTGCTGCGGCTGCTCCTCCT
GCCATTACTTCCAGCAATCTGGGCTCTTCTCGTGCCAGCCGCTGGGAAGG
TGAAGAGGGTAGTATTGTGAAGGAAGAAAATGAATATGTGCCCGCGCAGA
CAGCCCAGAAGGAGGACAGGAGGCTTTTAAGGCTGGAGCAGGCGAGGCAG
GTGGCGTTGGAGGGAAGGAAAGGTCGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGAAAGCGGAGAAGGAGGACGACGACGACGGCCCGTG
TATGAAGCGGAGGTGATCGAGGGTGGGGAAGAGAAAGATGAGGAGGAGGA
AGACAAGGAGGAAAGAGAGGAACGGCGACAACGAGCGCGGCGGAGAGGGA
GGAAGGCGAATGACGAGCAAGTGGAGGGGGGAAGAGAGGAGTTTGTAGAA
GGCGATCTGGCGGGAAGGCCGACGGTGAAACTTGAAGTAGGGGGAGTGGA
GGAGGAGGACGGGCCCGTGGACGAGGACGACGAAGACGCCATAGCCCGTC
GGCGGGCGGCGATACGGGAGCGGCTCAAGAATCTACAGATGGAGGAAAAA
GCGGCGGCAGCAGCAGGAGGAGGGGCAAGAGCCGACGCCAAGCCGGAGAG
TGACACGGAGGAGGACGAGGACGGGGGGGAGGATGAGGATGACGACTCTG
AGTACGAGACAGACAGCGACGATGAGAGTGAGGAGGAGGGAGGGGGAGGA
GGCGGGTTGTTCGCCCTACCCCGGCCTGTATTCATTCCTAAGCACAAACG
GGAGCTGGTCCAGCAGAGGGAGCAAGAAGAGAGGGAGGAAGCTGAGAAGG
AAAGCAAGGCCGTGCTTGCTAAGGAGCGAAGAATACGCGATACCCGGAAC
CTGGTGGCGGAGGAGGTGAGGAAGGAGGCCGAGGGGGCGGCCGCGTTAGA
GGGAGGGGGAGAAGACGGTTATGGGTCTGACGAAGGAGCTCCCGATGACA
CGGACCGACCGGAAGAAGACGCCTTGGAGTTTGAAAACTGGCGGTTGAGG
GAGTTGGGGAGGGTGAAGAGGGACAAGGAGATGAGGGAGGCGAGGGCGAG
GGAGAAAATGGAGGTGGCGAGAAGGAGAGCAATGACGGAGGGGGAGCGAG
ATGCGGAGGACCGACGGTTGGGGCGGGGGGTGTATGCGAAGCCAGAGGTG
CAGAAGACGAAGAGGAGGTTTATGCAGAAATACTACCATAAAGGAGCTTT
CTACATGGACGAGGAGAGCATCAGGGAGAAGGACGACGTGAGAAGGAGGG
CGGCGGATGACGCGACTGGGGAGGACAAGTTCAATCGTGCAGCGTTACCC
CAAGTGATGCAGGTGAAGAAGTTTGGACGAGCAGGACAGACGAAATATAC
ACACTTGCTTGACCAGGACACGACACGGGCGGAGAAGCACAAGACGGGGT
CAGTCTGGCAGCAACGAGACCAGGATAAGCGCCAGGGCGTAGTGGGGGAG
GCCAAGAATCGATTTGCGCACAAGCTGGGTGGTACGGGCGACATTGACTC
TGCGGGGCGGCGGAAAAAGCAGGGGTAGTGATGGGAAGGAACAAAGACGG
AAGGCGGGAGGCGGGGGGTGGCGGGGTTGTAGATGTGCGCGTGGTGCTAT
AGCAATACATGTACGGGGCAGGAGAGGGAGGCACATATGAACAGAACAGC
GAGAAGACTAAGACATGATAGGAAAAGCATTTTTTCTTCTTTAAAAAAGG
AACAGGCAAAGAAGACGAACCAAGAAAG
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protein sequence of NO09G01820.1

>NO09G01820.1-protein ID=NO09G01820.1-protein|Name=NO09G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=601bp
MFSKRDLGLALSDKIEDNVLTHTHDDTATDVTDHALRVKRDPTRKVQRLR
PGEMPAWVGEAEEEEGFAAAAAAPPAITSSNLGSSRASRWEGEEGSIVKE
ENEYVPAQTAQKEDRRLLRLEQARQVALEGRKGRGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGESGEGGRRRRPVYEAEVIEGGEEKDEEEEDKEEREER
RQRARRRGRKANDEQVEGGREEFVEGDLAGRPTVKLEVGGVEEEDGPVDE
DDEDAIARRRAAIRERLKNLQMEEKAAAAAGGGARADAKPESDTEEDEDG
GEDEDDDSEYETDSDDESEEEGGGGGGLFALPRPVFIPKHKRELVQQREQ
EEREEAEKESKAVLAKERRIRDTRNLVAEEVRKEAEGAAALEGGGEDGYG
SDEGAPDDTDRPEEDALEFENWRLRELGRVKRDKEMREARAREKMEVARR
RAMTEGERDAEDRRLGRGVYAKPEVQKTKRRFMQKYYHKGAFYMDEESIR
EKDDVRRRAADDATGEDKFNRAALPQVMQVKKFGRAGQTKYTHLLDQDTT
RAEKHKTGSVWQQRDQDKRQGVVGEAKNRFAHKLGGTGDIDSAGRRKKQG
*
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mRNA from alignment at chr9:557292..560230+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01820.1 ID=NO09G01820.1|Name=NO09G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2939bp|location=Sequence derived from alignment at chr9:557292..560230+ (Nannochloropsis oceanica)
GATTTAACAAACAAGGCTCACCAATTGAGCTCTTTGATTTTAAGACTTTC
TTACTTTCTTACGCGCTACCGGGCTTTCCACTACGCGGCGACTTTTTGTA
AAGCGCGTTACACTACCAAGATATAGAAAGGATGGAATGCGGGGTTCAGT
TGTGAGTCCCAAAAAGGGTTGCGAGCGATGGGGAGGTCGTTGTCGACAAG
CACTACACACCCGGAAGTGAAGTCTTCCTTCCGTCTAGCGCGGCACCACA
CCATCCACTCACGGCGCATCTTTCACTTTTCATCTCCCACACACAAATCA
TGCCTGGACAGAAGCGACGCGGAGGACGATCTCGATTGCCTGCCAGAGCG
TGCGGCTTCGTCCGCGGCATCATCATCCCGTCAGCCTTCCTTCTTAGCTA
GGAGCCACAAGGCAAGGCCAAAACCATGTTTAGCAAGCGTGACCTGGGCC
TCGCCCTGTCGGACAAGATCGAAGACAACGTGCTCACGCACACGCATGAC
GAGTAAGTGTCGTTCTGGCTGGGTGTCTGTGATAGAGAGCAGGAGGTTGA
GCCCGAGCTTGGGGGAAAACAAGGCAATGATGGGGGGCGAGTGAAAGAGG
CCATGCTTGCGCTTATTCCTCTACAGTGGAGTTGTCACTTGCTCCTCTGT
GTGTTACTCTACTTTGTCGAGCGCTGAACGGGCCGGAAGCGAAAGCAAAA
GCCTGGCAACTGCGCAACAAACCCATACTTACCCATCCCTTCCTCATGCG
CTCCCCTTCTTCCTGTCTTATCTCCATCTCCCTCATTAGTACTGCCACCG
ATGTCACCGACCATGCCCTTCGTGTCAAGCGGGATCCCACACGCAAGGTG
CAACGACTGAGGCCCGGGGAGATGCCTGCATGGGTGGGCGAGGCAGAGGA
AGAGGAAGGCTTTGCGGCTGCTGCGGCTGCTCCTCCTGCCATTACTTCCA
GCAATCTGGGCTCTTCTCGTGCCAGCCGCTGGGAAGGTGAAGAGGGTAGT
ATTGTGAAGGAAGAAAATGAATATGTGCCCGCGCAGACAGCCCAGAAGGA
GGACAGGAGGCTTTTAAGGCTGGAGCAGGCGAGGCAGGTGGCGTTGGAGG
GAAGGAAAGGTCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGAAAGCGGAGAAGGAGGACGACGACGACGGCCCGTGTATGAAGCGGAGG
TGATCGAGGGTGGGGAAGAGAAAGATGAGGAGGAGGAAGACAAGGAGGAA
AGAGAGGAACGGCGACAACGAGCGCGGCGGAGAGGGAGGAAGGCGAATGA
CGAGCAAGTGGAGGGGGGAAGAGAGGAGTTTGTAGAAGGCGATCTGGCGG
GAAGGCCGACGGTGAAACTTGAAGTAGGGGGAGTGGAGGAGGAGGACGGG
CCCGTGGACGAGGACGACGAAGACGCCATAGCCCGTCGGCGGGCGGCGAT
ACGGGAGCGGCTCAAGAATCTACAGATGGAGGAAAAAGCGGCGGCAGCAG
CAGGAGGAGGGGCAAGAGCCGACGCCAAGCCGGAGAGTGACACGGAGGAG
GACGAGGACGGGGGGGAGGATGAGGATGACGACTCTGAGTACGAGACAGA
CAGCGACGATGAGAGTGAGGAGGAGGGAGGGGGAGGAGGCGGGTTGTTCG
CCCTACCCCGGCCTGTATTCATTCCTAAGCACAAACGGGAGCTGGTCCAG
CAGAGGGAGCAAGAAGAGAGGGAGGAAGCTGAGAAGGAAAGCAAGGCCGT
GCTTGCTAAGGAGCGAAGAATACGCGATACCCGGAACCTGGTGGCGGAGG
AGGTGAGGAAGGAGGCCGAGGGGGCGGCCGCGTTAGAGGGAGGGGGAGAA
GACGGTTATGGGTCTGACGAAGGAGCTCCCGATGACACGGACCGACCGGA
AGAAGACGCCTTGGAGTTTGAAAACTGGCGGTTGAGGGAGTTGGGGAGGG
TGAAGAGGGACAAGGAGATGAGGGAGGCGAGGGCGAGGGAGAAAATGGAG
GTGGCGAGAAGGAGAGCAATGACGGAGGGGGAGCGAGATGCGGAGGACCG
ACGGTTGGGGCGGGGGGTGTATGCGAAGCCAGAGGTGCAGAAGACGAAGA
GGAGGTTTATGCAGAAATACTACCATAAAGGAGCTTTCTACATGGACGAG
GAGAGCATCAGGGAGAAGGACGACGTGAGAAGGAGGGCGGCGGATGACGC
GACTGGGGAGGACAAGTTCAATCGTGCAGCGTTACCCCAAGTGATGCAGG
TGAAGAAGTTTGGACGAGCAGGACAGACGAAATATACACACTTGCTTGAC
CAGGACACGACACGGGCGGAGGTACGTCCTTTGACGAGGGGGGTGGGGGA
GAGGAAGAGAGTCAAGGGCAGAGATGGGTTTTTGGTGTATCTGTGAATGT
CTCTGTATCAGCGTTTGCGTGTGTATACCCATGTATTTCTCATTCTGCCC
TCCCCTCCCCTTCCCGCCTCCCCACCTGATGACACCACTATCGACCTCCC
CTTAATTTTTCCTTGATACATTCCCCCTCAACCGAAAAATAACAGAAGCA
CAAGACGGGGTCAGTCTGGCAGCAACGAGACCAGGATAAGCGCCAGGGCG
TAGTGGGGGAGGCCAAGAATCGATTTGCGCACAAGCTGGGTGGTACGGGC
GACATTGACTCTGCGGGGCGGCGGAAAAAGCAGGGGTAGTGATGGGAAGG
AACAAAGACGGAAGGCGGGAGGCGGGGGGTGGCGGGGTTGTAGATGTGCG
CGTGGTGCTATAGCAATACATGTACGGGGCAGGAGAGGGAGGCACATATG
AACAGAACAGCGAGAAGACTAAGACATGATAGGAAAAGCATTTTTTCTTC
TTTAAAAAAGGAACAGGCAAAGAAGACGAACCAAGAAAG
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Coding sequence (CDS) from alignment at chr9:557292..560230+

>NO09G01820.1 ID=NO09G01820.1|Name=NO09G01820.1|organism=Nannochloropsis oceanica|type=CDS|length=1803bp|location=Sequence derived from alignment at chr9:557292..560230+ (Nannochloropsis oceanica)
ATGTTTAGCAAGCGTGACCTGGGCCTCGCCCTGTCGGACAAGATCGAAGA
CAACGTGCTCACGCACACGCATGACGATACTGCCACCGATGTCACCGACC
ATGCCCTTCGTGTCAAGCGGGATCCCACACGCAAGGTGCAACGACTGAGG
CCCGGGGAGATGCCTGCATGGGTGGGCGAGGCAGAGGAAGAGGAAGGCTT
TGCGGCTGCTGCGGCTGCTCCTCCTGCCATTACTTCCAGCAATCTGGGCT
CTTCTCGTGCCAGCCGCTGGGAAGGTGAAGAGGGTAGTATTGTGAAGGAA
GAAAATGAATATGTGCCCGCGCAGACAGCCCAGAAGGAGGACAGGAGGCT
TTTAAGGCTGGAGCAGGCGAGGCAGGTGGCGTTGGAGGGAAGGAAAGGTC
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGCGGAGA
AGGAGGACGACGACGACGGCCCGTGTATGAAGCGGAGGTGATCGAGGGTG
GGGAAGAGAAAGATGAGGAGGAGGAAGACAAGGAGGAAAGAGAGGAACGG
CGACAACGAGCGCGGCGGAGAGGGAGGAAGGCGAATGACGAGCAAGTGGA
GGGGGGAAGAGAGGAGTTTGTAGAAGGCGATCTGGCGGGAAGGCCGACGG
TGAAACTTGAAGTAGGGGGAGTGGAGGAGGAGGACGGGCCCGTGGACGAG
GACGACGAAGACGCCATAGCCCGTCGGCGGGCGGCGATACGGGAGCGGCT
CAAGAATCTACAGATGGAGGAAAAAGCGGCGGCAGCAGCAGGAGGAGGGG
CAAGAGCCGACGCCAAGCCGGAGAGTGACACGGAGGAGGACGAGGACGGG
GGGGAGGATGAGGATGACGACTCTGAGTACGAGACAGACAGCGACGATGA
GAGTGAGGAGGAGGGAGGGGGAGGAGGCGGGTTGTTCGCCCTACCCCGGC
CTGTATTCATTCCTAAGCACAAACGGGAGCTGGTCCAGCAGAGGGAGCAA
GAAGAGAGGGAGGAAGCTGAGAAGGAAAGCAAGGCCGTGCTTGCTAAGGA
GCGAAGAATACGCGATACCCGGAACCTGGTGGCGGAGGAGGTGAGGAAGG
AGGCCGAGGGGGCGGCCGCGTTAGAGGGAGGGGGAGAAGACGGTTATGGG
TCTGACGAAGGAGCTCCCGATGACACGGACCGACCGGAAGAAGACGCCTT
GGAGTTTGAAAACTGGCGGTTGAGGGAGTTGGGGAGGGTGAAGAGGGACA
AGGAGATGAGGGAGGCGAGGGCGAGGGAGAAAATGGAGGTGGCGAGAAGG
AGAGCAATGACGGAGGGGGAGCGAGATGCGGAGGACCGACGGTTGGGGCG
GGGGGTGTATGCGAAGCCAGAGGTGCAGAAGACGAAGAGGAGGTTTATGC
AGAAATACTACCATAAAGGAGCTTTCTACATGGACGAGGAGAGCATCAGG
GAGAAGGACGACGTGAGAAGGAGGGCGGCGGATGACGCGACTGGGGAGGA
CAAGTTCAATCGTGCAGCGTTACCCCAAGTGATGCAGGTGAAGAAGTTTG
GACGAGCAGGACAGACGAAATATACACACTTGCTTGACCAGGACACGACA
CGGGCGGAGAAGCACAAGACGGGGTCAGTCTGGCAGCAACGAGACCAGGA
TAAGCGCCAGGGCGTAGTGGGGGAGGCCAAGAATCGATTTGCGCACAAGC
TGGGTGGTACGGGCGACATTGACTCTGCGGGGCGGCGGAAAAAGCAGGGG
TAG
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Synonyms
Publications