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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:520419..524348 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G01660.2 vs.
Match: EWM27544.1 (dnaj subfamily b member 4 [Nannochloropsis gaditana]) HSP 1 Score: 581.3 bits (1497), Expect = 2.200e-162 Identity = 297/363 (81.82%), Postives = 320/363 (88.15%), Query Frame = 0
Query: 1 MSAGDDGLVSFFFYILFVYPTTSWILKPGRFPKKTGLMYAIGFLAILALGKTYLEFQERGPNYYNELNINRASSPLEIKKAYKKMSLELHPDKNKSPNAADMFARVKDAYDTLMDPELREVYNKFGPEGIKHNRRFDETQLLLEIAVYYATWGMLAFVLTLGKASSSARNWIFTGQIVMLIAEISLMLQETKLPGWLLPAWTEHEFVFLMHSLFPAFMNGCRCLGGFLYVDFDEQARQKMEHLDAQNKDILLVLRDIQVNIQSIAVSGGSSGLGGSSSRGAGGGGSSAAGTLSGAPVVKATPTGKIKEMEERLRQQRERLGAGAGRVSEPVKPAAV--AGSGMGMWWAIIMYVVFHFVFNNSS 362
MS G+DGLVSFFFYILFVYP TSW LKPGRFP+K G+ YAI FLAILALGKTYLEFQ+RGPN+YNEL+I RAS+PLEIKKAYKKMSLELHPDKNKSP AA+ FARVK+AYDTLMDPELREVYNKFG EGIK NRRFDETQLLLEIAV+Y TWGMLAFVLTLGKASS+ARNWI+TGQI MLIAEISLMLQETKLP WLLP WTEHEFVFLM SLFPAFMNGCRCL GFLYVD DEQARQKMEHL+AQNKDIL+VLRDIQVN+QSI SGGS G + + GGGSSAAGTLSG PV+KATPTGKIKEMEERLRQQRER G+ RVSEPVK A AG G +WWAI++YVVFHFVF N+S
Sbjct: 1 MSQGEDGLVSFFFYILFVYPLTSWFLKPGRFPRKRGITYAISFLAILALGKTYLEFQDRGPNHYNELHITRASTPLEIKKAYKKMSLELHPDKNKSPTAAEEFARVKEAYDTLMDPELREVYNKFGAEGIKQNRRFDETQLLLEIAVFYVTWGMLAFVLTLGKASSTARNWIYTGQIAMLIAEISLMLQETKLPSWLLPTWTEHEFVFLMRSLFPAFMNGCRCLCGFLYVDVDEQARQKMEHLEAQNKDILMVLRDIQVNMQSIQASGGSGG-----NYRSLGGGSSAAGTLSGGPVIKATPTGKIKEMEERLRQQRER---GSSRVSEPVKAGAAEKAGGGFQVWWAILLYVVFHFVFANNS 355
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G01660.2 ID=NO09G01660.2|Name=NO09G01660.2|organism=Nannochloropsis oceanica|type=mRNA|length=3448bp TGAGTGTATGCACGTAACGTTCTTCTTTTTCTTGTTACTTATTCCTGTGA GAAGGTATTTTGACTTGCTTCTGTTTCAACAACGTGGTAAGAACGGCTGA AATGACATCTGCCCCTTCCATAACGTCCCTTTACATCCTTTTCCAATGAA CACTAGCCTTCATTTTTCGAGTCATGTCTTACACTAGTCCACCATACTTA CACCCATCAAGGAGCGCATCAAGACCTCTCTCCTCCCTTCTTCCTCCGCA CTCTCCCGCACTTCTTCCTCATCACCGTCTTCTCCTTCATCTCCTTCGCT TTATCTTGGTCTCCTTTTTCTTCTCCTGCTTCCTCCTCGTCTTCTCCCTC CTTTACGGGTGCGCATCGGGAGACGTCGGACACCAGCACGACAGGTGGAC AAGACGACCACCCGGCTCCCTCGTCACCCAACAAATCCCACTCTATTTCT TGCTTGCTACGGGTCCACACGCCCAATCCTGAAAATCCTTTTCACATCTC GGTGTTTTTCCAAGGCCTTCGCGTCCTCCCCAACGTCCGACCACCACACG AACAACCACTTCTCCATAATTGCGCGACACCACGGAGTGAACTGAACAGG TCCTACTTCCTCCTCCTCCGTCCTCTTCTCTCCCACCTTCCCTTCTCCTC TTCCGCCCACTCTTTGCGTGCCTGCTGCCGCTTCCTCTGCCAAAAGATAT TCGCGGCTCACCCCTCTGTTAATCTCGGCCCGCCGGATCATTCCCCTAAG CTCGCGTGGGTCCACGTACCGCGTCTCGCTTACTTCATTCAAGTTAGGAT TCAATTCGACGTCTTTTCGAACCAAAAAAATATAGTCTATCTCATGTTCG CCCCACTCAGGGTTCGAGTCACTTATGTAGTGAATGCGGTTCATATAGGT GAAGTCGGAGGGCGCAAGGGAGGAAGAAGGGATACCAAGCTCCTGCTCAA GCTTCCGAATGGCCGCACGTTTGCACCCTAATACGGGATCATTTGGTTGG ACATCGTCGCCAAGTTCTGCTTGGGTCCACAGAGGGTGAGAACAGCAAGT GTTAGTCCACGTGCTGGGGAAAGTTATCTTGGCGGCTGCTCGTTTTTGGA GCAGCAGGCGGCCTAGCGTGTCAAAGAGAAAGACGGAGAAGGCTCGATGC AAAGGAGGACCTTTCTGATTGCGGTGGCCATTGCGCTTGGAGATGGCTTT GATTGGCTTATCATCAAAGGTTACGGCGATGATGCGCTCCTCTTCGAACA ACCGGGCTTGTTCGGGATCGAATGCTGTGGCTGAGGTGGTAGCGGCTCTG CTGCTGCTGCTGCTCGCACTGCCCCTGGGTCTTTGCAAGAAATTGGTGGT GGAAAACAGCCTCACATCTGTTGATCTTTCGATGGTGTCGCTGATACTAA TGCAGCGTACACTGGTTGTGCGTCTTGGCAACACAAAGGCATGTATGCAT GGGGCGCTGCGTGTTGCAGTTGAGATTAAGGCCTCGGACGTGCGGGCGAG GAGCAAAATCAGGGCCATGGCGAAGCTGGTAAGGATGTAGATTACAGATG TGATCCGAGCACAAGGGTGGTCGGTCATTCAAGGATTGTGACGCGTCAAA TACTGCATCATGCAATCGGCTCTAGGAGACAAACGTCATATTAGTCTCTA AGACGACTCTTCTTGATAGCTAAGGTTAGCACTCGATCACAGTTCGCAGC AGGGGCTAGAGTGTGGCGTGATCTTCCTGTACAGCGTGTGCCAAAAGGAG TGCGTGTTGTCAGACTACGAGATGCCTTGACACGTAAGACGATGTTTTGC TTCAAAGGCTCGCCGTTGTTGTGTGCAGCGATGAGGGTTTGTCATCATGA CTTTCGAGTGGATGAGACTCGTTGTGACGCCCTCTTCGTATGATAGCTGT CCTGACTACGCGCTTATTATGTGTCCGTCGTGCTTGCCCTTGTCTGACAT ACCCATTCTTCTTTTCCTGCGCCTACCCCTCCACAGGTTTTCAATAGCAG TAAGGAGGGCCAGCAACGGGCAGCTGCAACAGTAGCGGCAGCCGCACGTG ACTAGACGCGCAAGGACTTGGACACCACGTGCCTTGTCTTCGAGCATCAC TGGTACGCACCTCTGGTTGACCCCCCTTTAGGTAGTTTCTCCTACTTGGC GCCCACGCCGTGCTCCCTCAGTCGTCACCATGTCCGCAGGAGACGATGGA CTCGTCTCCTTCTTCTTCTACATCCTCTTCGTCTACCCCACCACCTCCTG GATCCTCAAACCTGGCCGCTTCCCGAAGAAAACTGGTCTGATGTATGCCA TAGGCTTCCTGGCCATTCTGGCTCTTGGGAAGACCTACCTCGAGTTCCAA GAACGCGGGCCTAACTATTACAACGAGCTAAACATCAACCGTGCCTCCAG TCCGTTGGAAATCAAAAAGGCCTATAAGAAGATGTCCTTGGAATTACACC CCGACAAGAACAAGAGCCCAAACGCCGCCGATATGTTTGCGCGGGTCAAG GATGCGTATGACACTTTAATGGACCCTGAATTGAGGGAGGTTTATAATAA ATTTGGTCCAGAGGGGATCAAGCATAACCGACGCTTCGACGAGACGCAGT TACTCTTGGAGATCGCGGTGTACTACGCGACCTGGGGTATGTTGGCTTTC GTGTTGACGCTGGGGAAGGCGAGTAGCAGTGCGCGGAACTGGATCTTCAC CGGTCAGATCGTCATGTTGATTGCGGAGATATCGTTGATGCTGCAAGAAA CGAAGCTCCCGGGATGGTTGTTGCCGGCTTGGACGGAGCATGAGTTTGTC TTCTTGATGCATTCTTTGTTCCCGGCTTTCATGAATGGATGTCGGTGTCT GGGTGGGTTTCTGTACGTTGATTTTGACGAGCAGGCAAGGCAGAAAATGG AGCATTTGGATGCGCAAAACAAGGACATATTGTTGGTGTTGAGAGACATC CAGGTTAACATTCAGTCGATTGCGGTCAGCGGCGGCAGCAGCGGGCTCGG TGGCAGCAGCAGCAGGGGGGCAGGTGGCGGGGGCTCGTCGGCGGCGGGTA CGCTAAGCGGTGCTCCCGTGGTAAAGGCCACGCCAACGGGCAAAATCAAA GAAATGGAAGAAAGGCTGCGCCAGCAACGGGAGCGGTTGGGAGCAGGCGC GGGTAGGGTCTCGGAACCGGTGAAACCAGCGGCGGTAGCAGGGAGTGGCA TGGGCATGTGGTGGGCCATCATTATGTATGTGGTTTTCCACTTTGTCTTC AACAACAGTAGCTCATGAGGGTAGGGAGGGAAGGAGGGGAGGAAGGGGAG GGATGGGATGCTGTGTAGCACTGACGCAAAGTTCACTTGAAGGAAAGGAA GGCGAAATAAGGAAAACAAAAGAAACGAAAAGACGACAAAGGCTGATGGA AAGACCATTCATTGTCCTCAGCCCGCGAAAACGAGACAACTGCAACTG back to topprotein sequence of NO09G01660.2 >NO09G01660.2-protein ID=NO09G01660.2-protein|Name=NO09G01660.2|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp MSAGDDGLVSFFFYILFVYPTTSWILKPGRFPKKTGLMYAIGFLAILALG KTYLEFQERGPNYYNELNINRASSPLEIKKAYKKMSLELHPDKNKSPNAA DMFARVKDAYDTLMDPELREVYNKFGPEGIKHNRRFDETQLLLEIAVYYA TWGMLAFVLTLGKASSSARNWIFTGQIVMLIAEISLMLQETKLPGWLLPA WTEHEFVFLMHSLFPAFMNGCRCLGGFLYVDFDEQARQKMEHLDAQNKDI LLVLRDIQVNIQSIAVSGGSSGLGGSSSRGAGGGGSSAAGTLSGAPVVKA TPTGKIKEMEERLRQQRERLGAGAGRVSEPVKPAAVAGSGMGMWWAIIMY VVFHFVFNNSSS* back to topmRNA from alignment at chr9:520419..524348+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G01660.2 ID=NO09G01660.2|Name=NO09G01660.2|organism=Nannochloropsis oceanica|type=mRNA|length=3930bp|location=Sequence derived from alignment at chr9:520419..524348+ (Nannochloropsis oceanica) TGAGTGTATGCACGTAACGTTCTTCTTTTTCTTGTTACTTATTCCTGTGA
GAAGGTATTTTGACTTGCTTCTGTTTCAACAACGTGGTAAGAACGGCTGA
AATGACATCTGCCCCTTCCATAACGTCCCTTTACATCCTTTTCCAATGAA
CACTAGCCTTCATTTTTCGAGTCATGTCTTACACTAGTCCACCATACTTA
CACCCATCAAGGAGCGCATCAAGACCTCTCTCCTCCCTTCTTCCTCCGCA
CTCTCCCGCACTTCTTCCTCATCACCGTCTTCTCCTTCATCTCCTTCGCT
TTATCTTGGTCTCCTTTTTCTTCTCCTGCTTCCTCCTCGTCTTCTCCCTC
CTTTACGGGTGCGCATCGGGAGACGTCGGACACCAGCACGACAGGTGGAC
AAGACGACCACCCGGCTCCCTCGTCACCCAACAAATCCCACTCTATTTCT
TGCTTGCTACGGGTCCACACGCCCAATCCTGAAAATCCTTTTCACATCTC
GGTGTTTTTCCAAGGCCTTCGCGTCCTCCCCAACGTCCGACCACCACACG
AACAACCACTTCTCCATAATTGCGCGACACCACGGAGTGAACTGAACAGG
TCCTACTTCCTCCTCCTCCGTCCTCTTCTCTCCCACCTTCCCTTCTCCTC
TTCCGCCCACTCTTTGCGTGCCTGCTGCCGCTTCCTCTGCCAAAAGATAT
TCGCGGCTCACCCCTCTGTTAATCTCGGCCCGCCGGATCATTCCCCTAAG
CTCGCGTGGGTCCACGTACCGCGTCTCGCTTACTTCATTCAAGTTAGGAT
TCAATTCGACGTCTTTTCGAACCAAAAAAATATAGTCTATCTCATGTTCG
CCCCACTCAGGGTTCGAGTCACTTATGTAGTGAATGCGGTTCATATAGGT
GAAGTCGGAGGGCGCAAGGGAGGAAGAAGGGATACCAAGCTCCTGCTCAA
GCTTCCGAATGGCCGCACGTTTGCACCCTAATACGGGATCATTTGGTTGG
ACATCGTCGCCAAGTTCTGCTTGGGTCCACAGAGGGTGAGAACAGCAAGT
GTTAGTCCACGTGCTGGGGAAAGTTATCTTGGCGGCTGCTCGTTTTTGGA
GCAGCAGGCGGCCTAGCGTGTCAAAGAGAAAGACGGAGAAGGCTCGATGC
AAAGGAGGACCTTTCTGATTGCGGTGGCCATTGCGCTTGGAGATGGCTTT
GATTGGCTTATCATCAAAGGTTACGGCGATGATGCGCTCCTCTTCGAACA
ACCGGGCTTGTTCGGGATCGAATGCTGTGGCTGAGGTGGTAGCGGCTCTG
CTGCTGCTGCTGCTCGCACTGCCCCTGGGTCTTTGCAAGAAATTGGTGGT
GGAAAACAGCCTCACATCTGTTGATCTTTCGATGGTGTCGCTGATACTAA
TGCAGCGTACACTGGTTGTGCGTCTTGGCAACACAAAGGCATGTATGCAT
GGGGCGCTGCGTGTTGCAGTTGAGATTAAGGCCTCGGACGTGCGGGCGAG
GAGCAAAATCAGGGCCATGGCGAAGCTGGTAAGGATGTAGATTACAGATG
TGATCCGAGCACAAGGGTGGTCGGTCATTCAAGGATTGTGACGCGTCAAA
TACTGCATCATGCAATCGGCTCTAGGAGACAAACGTCATATTAGTCTCTA
AGACGACTCTTCTTGATAGCTAAGGTTAGCACTCGATCACAGTTCGCAGC
AGGGGCTAGAGTGTGGCGTGATCTTCCTGTACAGCGTGTGCCAAAAGGAG
TGCGTGTTGTCAGACTACGAGATGCCTTGACACGTAAGACGATGTTTTGC
TTCAAAGGCTCGCCGTTGTTGTGTGCAGCGATGAGGGTTTGTCATCATGA
CTTTCGAGTGGATGAGACTCGTTGTGACGCCCTCTTCGTATGATAGCTGT
CCTGACTACGCGCTTATTATGTGTCCGTCGTGCTTGCCCTTGTCTGACAT
ACCCATTCTTCTTTTCCTGCGCCTACCCCTCCACAGGTTTTCAATAGCAG
TAAGGAGGGCCAGCAACGGGCAGCTGCAACAGTAGCGGCAGCCGCACGTG
ACTAGACGCGCAAGGACTTGGACACCACGTGCCTTGTCTTCGAGCATCAC
TGGTACGCACCTCTGGTTGACCCCCCTTTAGGTAGTTTCTCCTACTTGGC
GCCCACGCCGTGCTCCCTCAGTCGTCACCATGTCCGCAGGAGACGATGGA
CTCGTCTCCTTCTTCTTCTACATCCTCTTCGTCTACCCCACCACCTCCTG
GATCCTCAAACCTGGCCGCTTCCCGAAGAAAACTGGTCTGATGTATGCCA
TAGGCTTCCTGGCCATTCTGGCTCTTGGGAAGACCTACCTCGAGTTCCAA
GAACGCGGGCCTAACTATTACAACGAGCTAAACATCAACCGTGCCTCCAG
TCCGTTGGAAATCAAAAAGGCCTATAAGAAGATGTCCTTGGAATTACACC
CCGACAAGAACAAGAGCCCAAACGCCGCCGATATGTTTGCGCGGGTCAAG
GATGCGTATGACACTTTAATGGACCCTGAATTGAGGGAGGTTTATAATAA
ATTTGGTCCAGAGGGGATCAAGCATAACCGACGCTTCGACGAGACGCAGT
TACTCTTGGAGATCGCGGTGTACTACGCGACCTGGGGTATGTTGGCTTTC
GTGTTGACGCTGGGGAAGGCGAGTAGCAGTGCGCGGAACTGGATCTTCAC
CGGTCAGATCGTCATGTTGATTGCGGAGATATCGTTGATGCTGCAAGAAA
CGAAGCTCCCGGGATGGTTGTTGCCGGCTTGGACGGAGCATGAGTTTGTC
TTCTTGATGCATTCTTTGTTCCCGGCTTTCATGAATGGATGTCGGTGTCT
GGGTGGGTTTCTGTACGTTGATTTTGACGAGCAGGCAAGGCAGAAAATGG
AGCATTTGGATGCGCAAAACAAGGACATATTGTTGGTGTTGAGAGACATC
CAGGTTAACATTCAGTCGATTGCGGTACGTACGGCCAGAACGAACATGTG
TCTTCGTCTATGATGTGTTTTGGTCTTTATTTGTGTGATGTGTTTGTGTT
GGGTGGAAGTCGCAGAGAGCATGCGGTGTGTCGTGAACACACGCAGTCAA
TCGCGGTACGTTCGGGCAGGAGACGAGAGGATTAATCCTCTTAGCGTATC
GTGTGTTTGGATGTTGTTATGTTGCTTGTCGTTTCCTCCTTTCTCCCCTC
TGTGTGTATGTGATGAGTCTGTGTGCATGAGGAGCGGTGCGAGAGCGTTT
TCTTTATTCGACCCCCCCTCCTTCTCCCCCCCCTCTTTGGTAATCTATAT
ACAATAGACACGCCGCGCCGCTGCCTTGGCTAACCCCTCTTCCTCCTCCT
CTTCCTCTTCCTCCACCATTGTACCCACCATCCCGCCCTCTTCCTCTTCA
TCCACCACCACCAACAACTCCAACAACAACTACAACGACAACAACTACAA
CGACAGGTCAGCGGCGGCAGCAGCGGGCTCGGTGGCAGCAGCAGCAGGGG
GGCAGGTGGCGGGGGCTCGTCGGCGGCGGGTACGCTAAGCGGTGCTCCCG
TGGTAAAGGCCACGCCAACGGGCAAAATCAAAGAAATGGAAGAAAGGCTG
CGCCAGCAACGGGAGCGGTTGGGAGCAGGCGCGGGTAGGGTCTCGGAACC
GGTGAAACCAGCGGCGGTAGCAGGGAGTGGCATGGGCATGTGGTGGGCCA
TCATTATGTATGTGGTTTTCCACTTTGTCTTCAACAACAGTAGCTCATGA
GGGTAGGGAGGGAAGGAGGGGAGGAAGGGGAGGGATGGGATGCTGTGTAG
CACTGACGCAAAGTTCACTTGAAGGAAAGGAAGGCGAAATAAGGAAAACA
AAAGAAACGAAAAGACGACAAAGGCTGATGGAAAGACCATTCATTGTCCT
CAGCCCGCGAAAACGAGACAACTGCAACTG back to topCoding sequence (CDS) from alignment at chr9:520419..524348+ >NO09G01660.2 ID=NO09G01660.2|Name=NO09G01660.2|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr9:520419..524348+ (Nannochloropsis oceanica) ATGTCCGCAGGAGACGATGGACTCGTCTCCTTCTTCTTCTACATCCTCTT CGTCTACCCCACCACCTCCTGGATCCTCAAACCTGGCCGCTTCCCGAAGA AAACTGGTCTGATGTATGCCATAGGCTTCCTGGCCATTCTGGCTCTTGGG AAGACCTACCTCGAGTTCCAAGAACGCGGGCCTAACTATTACAACGAGCT AAACATCAACCGTGCCTCCAGTCCGTTGGAAATCAAAAAGGCCTATAAGA AGATGTCCTTGGAATTACACCCCGACAAGAACAAGAGCCCAAACGCCGCC GATATGTTTGCGCGGGTCAAGGATGCGTATGACACTTTAATGGACCCTGA ATTGAGGGAGGTTTATAATAAATTTGGTCCAGAGGGGATCAAGCATAACC GACGCTTCGACGAGACGCAGTTACTCTTGGAGATCGCGGTGTACTACGCG ACCTGGGGTATGTTGGCTTTCGTGTTGACGCTGGGGAAGGCGAGTAGCAG TGCGCGGAACTGGATCTTCACCGGTCAGATCGTCATGTTGATTGCGGAGA TATCGTTGATGCTGCAAGAAACGAAGCTCCCGGGATGGTTGTTGCCGGCT TGGACGGAGCATGAGTTTGTCTTCTTGATGCATTCTTTGTTCCCGGCTTT CATGAATGGATGTCGGTGTCTGGGTGGGTTTCTGTACGTTGATTTTGACG AGCAGGCAAGGCAGAAAATGGAGCATTTGGATGCGCAAAACAAGGACATA TTGTTGGTGTTGAGAGACATCCAGGTTAACATTCAGTCGATTGCGGTCAG CGGCGGCAGCAGCGGGCTCGGTGGCAGCAGCAGCAGGGGGGCAGGTGGCG GGGGCTCGTCGGCGGCGGGTACGCTAAGCGGTGCTCCCGTGGTAAAGGCC ACGCCAACGGGCAAAATCAAAGAAATGGAAGAAAGGCTGCGCCAGCAACG GGAGCGGTTGGGAGCAGGCGCGGGTAGGGTCTCGGAACCGGTGAAACCAG CGGCGGTAGCAGGGAGTGGCATGGGCATGTGGTGGGCCATCATTATGTAT GTGGTTTTCCACTTTGTCTTCAACAACAGTAGCTCATGA back to top
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