NO09G01400.1, NO09G01400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01400.1
Unique NameNO09G01400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1517
Alignment locationchr9:452555..454071 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:452555..454071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01400.1 vs.
Match: EWM27631.1 (hypothetical protein Naga_100059g14 [Nannochloropsis gaditana])

HSP 1 Score: 156.0 bits (393), Expect = 2.100e-34
Identity = 125/282 (44.33%), Postives = 176/282 (62.41%), Query Frame = 0 
Query:   47 SSSTIMTTISKAMAH-RPPRSSSPPTPHPASPPNPS-SSFSSSISSS-SSSSSSSSYRLLTFVNNLRQSTDEATTSLNEALAHMSSLSAELKLEQKEEKQILSELKETLHQTRKVQAIASETQSKIFELERHNSLLSWQVGMVRVLEEEATEFLDGFRGRLASVQERHGKEMEVEMKKARKTHMHMTEASKGLVVAVAGVQAAKEEGEEAAAQFLAMEQQRDEVRAEMRKEQEETRKLLEEVKEVNLKIQQTDEAVGELETYVMALKNERMRAAAAASKEGG 326
            SSS   TT S +++  R P +S  P      P +P+ ++F SS SSS SSSSSSSSYRLLTFVN+LRQSTDEA+  L  ALA   SL AEL  E+KEE+++L  +   +  TR+ Q  A+  Q+ +  LE   + L+W+VG+VR LE E   F  GF  ++A +QE++ +EM  EM+KA  TH  + E  + L VA  GV++AKE+  EA  +   +E++RD    E+  EQEETR+L+  +K ++ +I  T+E V ELETY  A+++ RMR A  A    G
Sbjct:   86 SSSCPSTTCSSSVSTPRHPPASREPNASNIRPESPTIAAFGSSFSSSSSSSSSSSSYRLLTFVNDLRQSTDEASKDLKAALAENESLGAELVAEKKEEQRLLEGMATVISDTRQAQDRAAAIQTTLSNLEARRTDLAWRVGLVRALEGEIHSFYTGFIDKMALLQEQYRREMGEEMEKAAGTHARLMEVRRELKVAAKGVRSAKEDCLEAEKRQEIIEKERDMFSEELGAEQEETRRLVGGMKAMDKEITGTEETVSELETYTTAIRDARMRIAGEAECRAG 367
The following BLAST results are available for this feature:
BLAST of NO09G01400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27631.12.100e-3444.33hypothetical protein Naga_100059g14 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01400NO09G01400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01400.1NO09G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01400.1.cds1NO09G01400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01400.1 ID=NO09G01400.1|Name=NO09G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp
ATGCATGTAAACATATCAGACAATTACCTTCTCACCTACTTCTTCACAGA
CTACACCCACCCATCACATCACCGTAAACAGCAGCAAAGGAGCAGCAGCA
GCAGGACCAGAAGCGGCAGTACAATTTATAGCAGTAATAGCAGCAGTACC
ATCATGACGACAATTTCCAAAGCCATGGCTCATCGCCCCCCCCGCTCCTC
CTCCCCCCCTACCCCCCACCCTGCGTCCCCCCCAAACCCCTCCTCCTCTT
TCTCCTCTTCTATATCCTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTAC
CGTCTCCTCACCTTTGTCAATAACCTCCGTCAATCCACCGATGAAGCCAC
CACAAGCCTCAACGAGGCCCTGGCGCATATGTCATCCCTCTCCGCCGAAC
TCAAGCTTGAGCAAAAGGAAGAAAAACAAATCTTGTCAGAGCTTAAAGAG
ACCTTGCACCAAACCCGCAAAGTCCAAGCAATAGCCAGCGAAACCCAGTC
GAAAATATTCGAATTGGAGAGACATAATTCTTTGTTGTCGTGGCAGGTAG
GTATGGTGAGGGTTCTTGAAGAAGAGGCGACAGAGTTTTTGGATGGATTT
AGGGGGAGATTAGCTTCGGTCCAGGAGAGACATGGTAAGGAGATGGAGGT
GGAGATGAAGAAAGCGAGGAAGACGCATATGCATATGACGGAAGCAAGCA
AGGGATTGGTGGTTGCGGTGGCGGGAGTGCAAGCAGCGAAGGAGGAGGGG
GAGGAGGCAGCGGCACAATTCCTGGCGATGGAGCAGCAGAGGGATGAGGT
GAGGGCGGAAATGAGGAAGGAGCAGGAGGAGACGCGGAAGCTGTTGGAAG
AGGTGAAAGAGGTCAATTTGAAAATACAACAGACAGATGAGGCGGTGGGA
GAGCTGGAAACGTATGTCATGGCATTGAAGAATGAACGGATGCGCGCGGC
GGCAGCGGCATCGAAGGAGGGGGGGGAGGAAAAGGAGGGGGGAGGGAGGT
GAGGGAGTTGGGAGGCTGAATTAAGGGGGGGCGGAGTGTCCGAGGGAAAA
TAGATGACTGACGGAAGGGATAATGAGAGTGAATTCAATTCATGAGACGA
AAAAGCGGCGACATAGAGTGAGTGTACATCAGTATATGTGCCCAGTTTGC
GGAAATATGGAGGAAGGGCGCGACATAAAGTAAAAGGATGAAGTATAAGA
AAGTCAGTGGACAGATGTTGGGCCGAAAGAATGTTTGGTGGTATAAAAGA
TTGAGGAGAAGGCAAGGAAGTGAGTTAGTCGGACATACATGGCCGTGTAG
TATATTACAGTGGGGAGAAGCGACGGATTTGTGTTTGGCAGTCATGGGAT
GCAGAAAAATAAAGTGTGGTGAGAATGAGAAGGTGGGCATGTCATCAAAG
AGAGTTAGCGGCGATAGCATGAGAGAGACCGGCGGAGAAGAGTACGCCAA
GCGAAAAGAAAGAGTTGTGAGTATGTGTGTCTGCGGACATAAAGAAAGTG
AAGACATAAACGGCTTG
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protein sequence of NO09G01400.1

>NO09G01400.1-protein ID=NO09G01400.1-protein|Name=NO09G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MHVNISDNYLLTYFFTDYTHPSHHRKQQQRSSSSRTRSGSTIYSSNSSST
IMTTISKAMAHRPPRSSSPPTPHPASPPNPSSSFSSSISSSSSSSSSSSY
RLLTFVNNLRQSTDEATTSLNEALAHMSSLSAELKLEQKEEKQILSELKE
TLHQTRKVQAIASETQSKIFELERHNSLLSWQVGMVRVLEEEATEFLDGF
RGRLASVQERHGKEMEVEMKKARKTHMHMTEASKGLVVAVAGVQAAKEEG
EEAAAQFLAMEQQRDEVRAEMRKEQEETRKLLEEVKEVNLKIQQTDEAVG
ELETYVMALKNERMRAAAAASKEGGEEKEGGGR*
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mRNA from alignment at chr9:452555..454071+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01400.1 ID=NO09G01400.1|Name=NO09G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp|location=Sequence derived from alignment at chr9:452555..454071+ (Nannochloropsis oceanica)
ATGCATGTAAACATATCAGACAATTACCTTCTCACCTACTTCTTCACAGA
CTACACCCACCCATCACATCACCGTAAACAGCAGCAAAGGAGCAGCAGCA
GCAGGACCAGAAGCGGCAGTACAATTTATAGCAGTAATAGCAGCAGTACC
ATCATGACGACAATTTCCAAAGCCATGGCTCATCGCCCCCCCCGCTCCTC
CTCCCCCCCTACCCCCCACCCTGCGTCCCCCCCAAACCCCTCCTCCTCTT
TCTCCTCTTCTATATCCTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTAC
CGTCTCCTCACCTTTGTCAATAACCTCCGTCAATCCACCGATGAAGCCAC
CACAAGCCTCAACGAGGCCCTGGCGCATATGTCATCCCTCTCCGCCGAAC
TCAAGCTTGAGCAAAAGGAAGAAAAACAAATCTTGTCAGAGCTTAAAGAG
ACCTTGCACCAAACCCGCAAAGTCCAAGCAATAGCCAGCGAAACCCAGTC
GAAAATATTCGAATTGGAGAGACATAATTCTTTGTTGTCGTGGCAGGTAG
GTATGGTGAGGGTTCTTGAAGAAGAGGCGACAGAGTTTTTGGATGGATTT
AGGGGGAGATTAGCTTCGGTCCAGGAGAGACATGGTAAGGAGATGGAGGT
GGAGATGAAGAAAGCGAGGAAGACGCATATGCATATGACGGAAGCAAGCA
AGGGATTGGTGGTTGCGGTGGCGGGAGTGCAAGCAGCGAAGGAGGAGGGG
GAGGAGGCAGCGGCACAATTCCTGGCGATGGAGCAGCAGAGGGATGAGGT
GAGGGCGGAAATGAGGAAGGAGCAGGAGGAGACGCGGAAGCTGTTGGAAG
AGGTGAAAGAGGTCAATTTGAAAATACAACAGACAGATGAGGCGGTGGGA
GAGCTGGAAACGTATGTCATGGCATTGAAGAATGAACGGATGCGCGCGGC
GGCAGCGGCATCGAAGGAGGGGGGGGAGGAAAAGGAGGGGGGAGGGAGGT
GAGGGAGTTGGGAGGCTGAATTAAGGGGGGGCGGAGTGTCCGAGGGAAAA
TAGATGACTGACGGAAGGGATAATGAGAGTGAATTCAATTCATGAGACGA
AAAAGCGGCGACATAGAGTGAGTGTACATCAGTATATGTGCCCAGTTTGC
GGAAATATGGAGGAAGGGCGCGACATAAAGTAAAAGGATGAAGTATAAGA
AAGTCAGTGGACAGATGTTGGGCCGAAAGAATGTTTGGTGGTATAAAAGA
TTGAGGAGAAGGCAAGGAAGTGAGTTAGTCGGACATACATGGCCGTGTAG
TATATTACAGTGGGGAGAAGCGACGGATTTGTGTTTGGCAGTCATGGGAT
GCAGAAAAATAAAGTGTGGTGAGAATGAGAAGGTGGGCATGTCATCAAAG
AGAGTTAGCGGCGATAGCATGAGAGAGACCGGCGGAGAAGAGTACGCCAA
GCGAAAAGAAAGAGTTGTGAGTATGTGTGTCTGCGGACATAAAGAAAGTG
AAGACATAAACGGCTTG
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Coding sequence (CDS) from alignment at chr9:452555..454071+

>NO09G01400.1 ID=NO09G01400.1|Name=NO09G01400.1|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at chr9:452555..454071+ (Nannochloropsis oceanica)
ATGCATGTAAACATATCAGACAATTACCTTCTCACCTACTTCTTCACAGA
CTACACCCACCCATCACATCACCGTAAACAGCAGCAAAGGAGCAGCAGCA
GCAGGACCAGAAGCGGCAGTACAATTTATAGCAGTAATAGCAGCAGTACC
ATCATGACGACAATTTCCAAAGCCATGGCTCATCGCCCCCCCCGCTCCTC
CTCCCCCCCTACCCCCCACCCTGCGTCCCCCCCAAACCCCTCCTCCTCTT
TCTCCTCTTCTATATCCTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTAC
CGTCTCCTCACCTTTGTCAATAACCTCCGTCAATCCACCGATGAAGCCAC
CACAAGCCTCAACGAGGCCCTGGCGCATATGTCATCCCTCTCCGCCGAAC
TCAAGCTTGAGCAAAAGGAAGAAAAACAAATCTTGTCAGAGCTTAAAGAG
ACCTTGCACCAAACCCGCAAAGTCCAAGCAATAGCCAGCGAAACCCAGTC
GAAAATATTCGAATTGGAGAGACATAATTCTTTGTTGTCGTGGCAGGTAG
GTATGGTGAGGGTTCTTGAAGAAGAGGCGACAGAGTTTTTGGATGGATTT
AGGGGGAGATTAGCTTCGGTCCAGGAGAGACATGGTAAGGAGATGGAGGT
GGAGATGAAGAAAGCGAGGAAGACGCATATGCATATGACGGAAGCAAGCA
AGGGATTGGTGGTTGCGGTGGCGGGAGTGCAAGCAGCGAAGGAGGAGGGG
GAGGAGGCAGCGGCACAATTCCTGGCGATGGAGCAGCAGAGGGATGAGGT
GAGGGCGGAAATGAGGAAGGAGCAGGAGGAGACGCGGAAGCTGTTGGAAG
AGGTGAAAGAGGTCAATTTGAAAATACAACAGACAGATGAGGCGGTGGGA
GAGCTGGAAACGTATGTCATGGCATTGAAGAATGAACGGATGCGCGCGGC
GGCAGCGGCATCGAAGGAGGGGGGGGAGGAAAAGGAGGGGGGAGGGAGGT
GA
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Synonyms
Publications