NO09G01370.1, NO09G01370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01370.1
Unique NameNO09G01370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1140
Alignment locationchr9:446190..447757 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:446190..447757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01370.1 vs.
Match: EWM27647.1 (hypothetical protein Naga_100059g11 [Nannochloropsis gaditana])

HSP 1 Score: 250.0 bits (637), Expect = 9.900e-63
Identity = 139/293 (47.44%), Postives = 189/293 (64.51%), Query Frame = 0 
Query:   27 SFVGADAE---ERTSAQVLLLDITLPPMTPKQYIDTFWHDAKFYEDFLKKSGDRDVDIQPWSPA-PSSQFNEHSKC--QLRTVVTKHPVKTRMPGIPSHVKSTKIQTLSEGEAGLGGKKSLPVIKVHETNVVEGVPFSDRFFVVLVWTVKWGEDTAGGSGSSSKPPYHSERR-NSKADGSKAIVRLTVHQHIVFRRPFWLERVVEKETASETLSTLKLWSLLAHQKVAVPVDGKSPAPTPMR-----KEGGTTTGFKCRLLSVARHLLLTGLLTSLVVLVTKGASYVPELVHR 308
            SFV A ++   +RTSA +LLLD+ LP +TP +Y+++FWHD  FYE+FLK+SGDRDV IQPWSPA PS+    H K   + RT+VTKHPVK +MPGIPSHV+STK Q LSE +    G     +I+VHETN VEGVPF+DRF V +VWT  W + T+             ER+ N K       VRLTVHQH++FR+ F LE++VE+++  ETL T+KLWS L HQ+V       +P+ TP++     +E       +C L++V R +L+TG     ++LV K A Y+P+ + R
Sbjct:  117 SFVAASSDPEIKRTSAPILLLDLNLPSITPDEYLESFWHDTSFYENFLKESGDRDVSIQPWSPAQPSTHSVAHHKMTHRTRTIVTKHPVKAKMPGIPSHVRSTKTQVLSEEKINRNGS---VIIRVHETNEVEGVPFADRFLVAVVWTATWTDHTS-----------EEERKFNPKT------VRLTVHQHVIFRQSFLLEKMVERDSRKETLDTVKLWSTLVHQQVM--ASEGAPSSTPLQGGDEGQEAKARRDHECILMAVTRKVLVTGAAAVFILLVGKTAFYLPDELAR 387
The following BLAST results are available for this feature:
BLAST of NO09G01370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27647.19.900e-6347.44hypothetical protein Naga_100059g11 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01370NO09G01370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01370.1NO09G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01370.1.cds1NO09G01370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01370.1.cds2NO09G01370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01370.1 ID=NO09G01370.1|Name=NO09G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1140bp
CAGCGCGAGGTATAGCAAGAACCTTGCCTGTACGTCAGTTAAAGAGAAAC
GGCGGCAAGCGTCAACTAAGCTCCGACGGCCCATCCACTGGAGCACGCAG
CCCACACACAGCCTATAGACAGCCCCCTTGCAATATAAGCGGCGGCATCA
TGACGTCCTCGCATAGTCACAAGTGGTTTTGGTCACGAAGACTGCTGTCT
GTAACTATGACCTACTTATTGTCAAGGAGCTTCGTCGGCGCAGACGCCGA
AGAGCGTACCTCCGCCCAAGTCCTCCTCCTCGACATCACCCTGCCCCCAA
TGACCCCAAAGCAATACATTGACACTTTTTGGCACGATGCAAAATTTTAT
GAGGACTTCTTGAAAAAATCAGGCGACCGAGATGTCGATATCCAGCCCTG
GTCTCCCGCCCCTTCATCCCAATTCAACGAGCACAGCAAATGCCAACTCC
GTACGGTCGTGACCAAGCACCCAGTCAAGACTCGAATGCCAGGAATCCCC
AGCCATGTCAAAAGTACCAAAATCCAGACTTTATCTGAGGGAGAAGCAGG
GTTGGGAGGGAAGAAGAGCTTACCGGTTATCAAGGTCCATGAAACCAACG
TCGTGGAAGGCGTGCCATTTTCCGATCGTTTTTTTGTTGTGCTGGTATGG
ACGGTCAAGTGGGGGGAAGATACAGCGGGTGGCAGCGGCAGCAGCAGTAA
ACCTCCATATCATTCGGAGAGAAGAAACTCCAAAGCCGACGGCAGCAAAG
CGATAGTACGGCTTACAGTGCACCAACACATCGTTTTCAGAAGGCCTTTT
TGGCTAGAGAGGGTAGTGGAGAAGGAGACAGCCAGCGAGACTTTGTCGAC
CCTTAAATTGTGGAGTCTCTTGGCACACCAGAAGGTTGCCGTGCCCGTCG
ACGGCAAGTCGCCTGCACCCACGCCGATGAGAAAGGAAGGAGGGACGACG
ACAGGATTTAAATGTAGGCTACTTTCTGTCGCCAGGCATCTCTTGCTTAC
GGGATTGTTGACATCACTCGTGGTATTGGTGACCAAAGGAGCTTCGTACG
TGCCTGAATTGGTCCATCGCAGCAGGCAGATCAAAAGCAAGTAGGATAAA
GAAACACATACACATGTGATAAGAGATAAGGAATAAGATA
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protein sequence of NO09G01370.1

>NO09G01370.1-protein ID=NO09G01370.1-protein|Name=NO09G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MTSSHSHKWFWSRRLLSVTMTYLLSRSFVGADAEERTSAQVLLLDITLPP
MTPKQYIDTFWHDAKFYEDFLKKSGDRDVDIQPWSPAPSSQFNEHSKCQL
RTVVTKHPVKTRMPGIPSHVKSTKIQTLSEGEAGLGGKKSLPVIKVHETN
VVEGVPFSDRFFVVLVWTVKWGEDTAGGSGSSSKPPYHSERRNSKADGSK
AIVRLTVHQHIVFRRPFWLERVVEKETASETLSTLKLWSLLAHQKVAVPV
DGKSPAPTPMRKEGGTTTGFKCRLLSVARHLLLTGLLTSLVVLVTKGASY
VPELVHRSRQIKSK*
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mRNA from alignment at chr9:446190..447757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01370.1 ID=NO09G01370.1|Name=NO09G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1568bp|location=Sequence derived from alignment at chr9:446190..447757- (Nannochloropsis oceanica)
CAGCGCGAGGTATAGCAAGAACCTTGCCTGTACGTCAGTTAAAGAGAAAC
GGCGGCAAGCGTCAACTAAGCTCCGACGGCCCATCCACTGGAGCACGCAG
CCCACACACAGCCTATAGACAGCCCCCTTGCAATATAAGCGGCGGCATCA
TGACGTCCTCGCATAGTCACAAGTGGTTTTGGTCACGAAGACTGCTGTCT
GTAACTATGACCTACTTATTGTCAAGGAGCTTCGTCGGCGCAGACGCCGA
AGAGCGTACCTCCGCCCAAGTCCTCCTCCTCGACATCACCCTGCCCCCAA
TGACCCCAAAGCAATACATTGACACTTTTTGGCACGATGCAAAATTTTAT
GAGGACTTCTTGAAAAAATCAGGTACGCCTCGGATTTAAGTTGCTCACAG
ACAGGATTTACATCGTCTTCTCTTTCTTCCCTTGAAGCTCTTTCTTCGTT
TTGCTCAGCGCGGCCATCCCTCCGTGCGTGTGTGTCGTGTGTGAAGGGAA
AATGTGTTATCTTTCACGGTAAAGTGAACGTATTACTTCTGGATTTGAAG
CTTCGCTTCCTGTTTTTAGGCTCCTTGTGCGACCCGGGAGCAGAATCGAC
CGTCTGTCTCGTCCCATCCATACCTCACACAAGCATGTGGTCCTTTCATC
ACTTACCCTCCTCCTCCTATCTCGAAAATCACAAAAGAATAAATCGAGGC
AGTCGCCATGTTATTCATTGCATTTTATAAACGACAATGTTGGAATTCTG
TCACGGCGAATTAGATGCCTCAACTTTGACCCTTCTCTCCTCGGAAATAG
GCGACCGAGATGTCGATATCCAGCCCTGGTCTCCCGCCCCTTCATCCCAA
TTCAACGAGCACAGCAAATGCCAACTCCGTACGGTCGTGACCAAGCACCC
AGTCAAGACTCGAATGCCAGGAATCCCCAGCCATGTCAAAAGTACCAAAA
TCCAGACTTTATCTGAGGGAGAAGCAGGGTTGGGAGGGAAGAAGAGCTTA
CCGGTTATCAAGGTCCATGAAACCAACGTCGTGGAAGGCGTGCCATTTTC
CGATCGTTTTTTTGTTGTGCTGGTATGGACGGTCAAGTGGGGGGAAGATA
CAGCGGGTGGCAGCGGCAGCAGCAGTAAACCTCCATATCATTCGGAGAGA
AGAAACTCCAAAGCCGACGGCAGCAAAGCGATAGTACGGCTTACAGTGCA
CCAACACATCGTTTTCAGAAGGCCTTTTTGGCTAGAGAGGGTAGTGGAGA
AGGAGACAGCCAGCGAGACTTTGTCGACCCTTAAATTGTGGAGTCTCTTG
GCACACCAGAAGGTTGCCGTGCCCGTCGACGGCAAGTCGCCTGCACCCAC
GCCGATGAGAAAGGAAGGAGGGACGACGACAGGATTTAAATGTAGGCTAC
TTTCTGTCGCCAGGCATCTCTTGCTTACGGGATTGTTGACATCACTCGTG
GTATTGGTGACCAAAGGAGCTTCGTACGTGCCTGAATTGGTCCATCGCAG
CAGGCAGATCAAAAGCAAGTAGGATAAAGAAACACATACACATGTGATAA
GAGATAAGGAATAAGATA
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Coding sequence (CDS) from alignment at chr9:446190..447757-

>NO09G01370.1 ID=NO09G01370.1|Name=NO09G01370.1|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at chr9:446190..447757- (Nannochloropsis oceanica)
ATGACGTCCTCGCATAGTCACAAGTGGTTTTGGTCACGAAGACTGCTGTC
TGTAACTATGACCTACTTATTGTCAAGGAGCTTCGTCGGCGCAGACGCCG
AAGAGCGTACCTCCGCCCAAGTCCTCCTCCTCGACATCACCCTGCCCCCA
ATGACCCCAAAGCAATACATTGACACTTTTTGGCACGATGCAAAATTTTA
TGAGGACTTCTTGAAAAAATCAGGCGACCGAGATGTCGATATCCAGCCCT
GGTCTCCCGCCCCTTCATCCCAATTCAACGAGCACAGCAAATGCCAACTC
CGTACGGTCGTGACCAAGCACCCAGTCAAGACTCGAATGCCAGGAATCCC
CAGCCATGTCAAAAGTACCAAAATCCAGACTTTATCTGAGGGAGAAGCAG
GGTTGGGAGGGAAGAAGAGCTTACCGGTTATCAAGGTCCATGAAACCAAC
GTCGTGGAAGGCGTGCCATTTTCCGATCGTTTTTTTGTTGTGCTGGTATG
GACGGTCAAGTGGGGGGAAGATACAGCGGGTGGCAGCGGCAGCAGCAGTA
AACCTCCATATCATTCGGAGAGAAGAAACTCCAAAGCCGACGGCAGCAAA
GCGATAGTACGGCTTACAGTGCACCAACACATCGTTTTCAGAAGGCCTTT
TTGGCTAGAGAGGGTAGTGGAGAAGGAGACAGCCAGCGAGACTTTGTCGA
CCCTTAAATTGTGGAGTCTCTTGGCACACCAGAAGGTTGCCGTGCCCGTC
GACGGCAAGTCGCCTGCACCCACGCCGATGAGAAAGGAAGGAGGGACGAC
GACAGGATTTAAATGTAGGCTACTTTCTGTCGCCAGGCATCTCTTGCTTA
CGGGATTGTTGACATCACTCGTGGTATTGGTGACCAAAGGAGCTTCGTAC
GTGCCTGAATTGGTCCATCGCAGCAGGCAGATCAAAAGCAAGTAG
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Synonyms
Publications