NO09G01360.4, NO09G01360.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01360.4
Unique NameNO09G01360.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1648
Alignment locationchr9:444195..446013 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:444195..446013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01360.4 vs.
Match: EWM27649.1 (hypothetical protein Naga_100059g10 [Nannochloropsis gaditana])

HSP 1 Score: 128.6 bits (322), Expect = 3.600e-26
Identity = 97/265 (36.60%), Postives = 152/265 (57.36%), Query Frame = 0 
Query:   71 TIDPNGVRGLFDVQQKRGKTLQRQLARLSGLQQRLSAEHTELEAAYHTAEDELNAAGETVRRLQDLEKELETRFKRLVEAHQLRIDAEAAQRVALSTELKVTVEEMENEQRRVHEEAATLRAKRHALETYLRMEFAEIDKERLVKEDRKKAAEAEIAGYKGNIEELEGAFEAMEVEIKERKLVTQEYDERTERTRKLLSKTNSCVDSLLKRA---KGAFEER--KDTGGEGGNDGGDEWDEKKWEKKRMVTKHDLARLQKKVKVI 331
            ++D   VR LF  Q +R   L  +  +L  L QR+  +H  LE    TAE EL    ++++RLQ LEK+LE R++ L+E  Q  ++AEAA+  A S  L+  VEE + EQ RV+E+  +LRA+R  L T +R E A +DK    K+ +++A E ++A YK   EEL+ AFE M  E+K+     Q  ++R   +R+ L+++NS +  +++     +  F++R   D   E   +G  E        K ++T+ DLARLQKKVK++
Sbjct:   51 SMDMGEVRRLFFKQTQRANILLCRQTKLDSLYQRMHKKHLNLENDSSTAETELETVQDSLQRLQGLEKKLERRYENLIENRQSEMEAEAARCSARSKRLQALVEEFQAEQNRVYEKRESLRAQRDNLATQVRSELAAVDKITSEKKVKEQARETQMAIYKEQWEELDKAFEGMNAEMKDLDCKLQADEKRIALSREHLAQSNSKISHMMREGNEMESEFDKRSGSDVNMETSREGSKE------TNKNVLTEGDLARLQKKVKML 309
The following BLAST results are available for this feature:
BLAST of NO09G01360.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27649.13.600e-2636.60hypothetical protein Naga_100059g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01360NO09G01360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01360.4NO09G01360.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01360.4.cds1NO09G01360.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01360.4 ID=NO09G01360.4|Name=NO09G01360.4|organism=Nannochloropsis oceanica|type=mRNA|length=1648bp
CACAGGCCTGTCAAGACTTGCAATCGAGCCCTCCATATTTGTCGCTCGGC
CCCCTCTTTCCTTGTGTGCGCGTGGTTACTTGTTCTACGCAATGCCCCCA
ACCAAGTCTCCCACAGTCACGAGTACTCCACTTACAACGTCGCTGGATAA
GCTGCCGCTAGAGTGTGATAACCATAACGACGAAAACGACGATATGCGAA
AGGGAGAAGCATTTGTGGCCAGCAGAGGTAACACCAGCAGTAACACGACC
AGCAGTGCGCCTCCTCCTGTGCCTCCCTCAGACGATGAAGACCTCGCCTA
CACGATAGACCCCAACGGCGTGCGTGGCTTGTTTGACGTGCAACAGAAGC
GGGGCAAGACTCTGCAGCGACAGCTAGCCAGGCTGAGTGGGCTACAACAA
CGCTTGAGTGCCGAACACACCGAGCTTGAGGCAGCCTACCACACCGCCGA
AGACGAACTAAACGCGGCGGGAGAGACGGTACGTCGGCTTCAGGACCTGG
AAAAGGAATTGGAGACACGATTTAAGCGCCTGGTAGAGGCGCATCAGTTG
CGTATAGATGCGGAGGCTGCGCAGCGCGTTGCCTTGTCTACCGAATTGAA
AGTCACGGTGGAGGAAATGGAGAATGAGCAGAGGCGGGTGCACGAGGAGG
CAGCGACGTTACGTGCGAAGCGCCACGCTCTTGAAACGTACTTACGGATG
GAATTTGCCGAGATCGACAAGGAGAGATTAGTAAAGGAGGACAGGAAGAA
GGCAGCGGAGGCTGAGATAGCTGGGTACAAGGGGAACATAGAAGAGTTGG
AGGGGGCGTTTGAGGCTATGGAGGTAGAGATAAAGGAGAGAAAATTGGTG
ACGCAGGAATACGACGAACGGACCGAACGTACCCGAAAGCTGTTGTCAAA
GACGAATAGTTGTGTGGACTCGCTGTTGAAAAGAGCTAAAGGGGCGTTTG
AGGAAAGGAAAGACACAGGAGGGGAAGGGGGGAATGATGGTGGCGATGAA
TGGGATGAGAAAAAATGGGAGAAGAAGAGAATGGTGACAAAACATGATTT
GGCAAGACTACAGAAGAAGGTCAAGGTAATTTTAATGGCAGGGAGGACAG
GGTGAGGGTGTCGTTGGTGGGATTTGGGGGAAATATGTCATGGGGAAGGA
GAGGAGGGGCGGTAGACATGTACACATGCCGATGGTCCCAAATCTACAGT
ACACATGGTTAAGATGGCAAATAAATTTATTGGCAACAAAATCGTCGAGT
ACCGGGTACAGGGGTTATAAGAGAGTGGGCCTGTGAATCACCACACACCG
ACATGCACTTACTCCTCAAATTCTCTTCGCAATAAAATTCAGGGGCTCGA
CCAAGAGCGCAAGCGGCAGGAGGCACGTAAAGACCGGCAAATCCGGGCGT
TTTCTGACTTGCGCACGAAGGAGTTGAAATTTAAGACTGAGGTGGAGGAG
TTAGAGACCAAGAAGCATCGCCTGGAAAAACTCGTGGCCAAGCTACTGGA
AGAGGACGCGATGCTGTGTGTGAAAATCCTGAAAGCGTCGCAATCGCAAT
AAATATAAAAAATGAAAAGGGAAAGCAGTTGTAAAAAGAGCAGCAAAGGA
AAGATGCAAAGAATCATAAATGAGGAAAAGGGAAAATGACGGGGAGGG
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protein sequence of NO09G01360.4

>NO09G01360.4-protein ID=NO09G01360.4-protein|Name=NO09G01360.4|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MPPTKSPTVTSTPLTTSLDKLPLECDNHNDENDDMRKGEAFVASRGNTSS
NTTSSAPPPVPPSDDEDLAYTIDPNGVRGLFDVQQKRGKTLQRQLARLSG
LQQRLSAEHTELEAAYHTAEDELNAAGETVRRLQDLEKELETRFKRLVEA
HQLRIDAEAAQRVALSTELKVTVEEMENEQRRVHEEAATLRAKRHALETY
LRMEFAEIDKERLVKEDRKKAAEAEIAGYKGNIEELEGAFEAMEVEIKER
KLVTQEYDERTERTRKLLSKTNSCVDSLLKRAKGAFEERKDTGGEGGNDG
GDEWDEKKWEKKRMVTKHDLARLQKKVKVILMAGRTG*
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mRNA from alignment at chr9:444195..446013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01360.4 ID=NO09G01360.4|Name=NO09G01360.4|organism=Nannochloropsis oceanica|type=mRNA|length=1819bp|location=Sequence derived from alignment at chr9:444195..446013- (Nannochloropsis oceanica)
CACAGGCCTGTCAAGACTTGCAATCGAGCCCTCCATATTTGTCGCTCGGC
CCCCTCTTTCCTTGTGTGCGCGTGGTTACTTGTTCTACGCAATGCCCCCA
ACCAAGTCTCCCACAGTCACGAGTACTCCACTTACAACGTCGCTGGATAA
GCTGCCGCTAGAGTGTGATAACCATAACGACGAAAACGACGATATGCGAA
AGGGAGAAGCATTTGTGGCCAGCAGAGGTAACACCAGCAGTAACACGACC
AGCAGTGCGCCTCCTCCTGTGCCTCCCTCAGACGATGAAGACCTCGCCTA
CACGATAGACCCCAACGGCGTGCGTGGCTTGTTTGACGTGCAACAGAAGC
GGGGCAAGACTCTGCAGCGACAGCTAGCCAGGCTGAGTGGGCTACAACAA
CGCTTGAGTGCCGAACACACCGAGCTTGAGGCAGCCTACCACACCGCCGA
AGACGAACTAAACGCGGCGGGAGAGACGGTACGTCGGCTTCAGGACCTGG
AAAAGGAATTGGAGACACGATTTAAGCGCCTGGTAGAGGCGCATCAGTTG
CGTATAGATGCGGAGGCTGCGCAGCGCGTTGCCTTGTCTACCGAATTGAA
AGTCACGGTGGAGGAAATGGAGAATGAGCAGAGGCGGGTGCACGAGGAGG
CAGCGACGTTACGTGCGAAGCGCCACGCTCTTGAAACGTACTTACGGATG
GAATTTGCCGAGATCGACAAGGAGAGATTAGTAAAGGAGGACAGGAAGAA
GGCAGCGGAGGCTGAGATAGCTGGGTACAAGGGGAACATAGAAGAGTTGG
AGGGGGCGTTTGAGGCTATGGAGGTAGAGATAAAGGAGAGAAAATTGGTG
ACGCAGGAATACGACGAACGGACCGAACGTACCCGAAAGCTGTTGTCAAA
GACGAATAGTTGTGTGGACTCGCTGTTGAAAAGAGCTAAAGGGGCGTTTG
AGGAAAGGAAAGACACAGGAGGGGAAGGGGGGAATGATGGTGGCGATGAA
TGGGATGAGAAAAAATGGGAGAAGAAGAGAATGGTGACAAAACATGATTT
GGCAAGACTACAGAAGAAGGTCAAGGTAATTTTAATGGCAGGGAGGACAG
GGTGAGGGTGTCGTTGGTGGGATTTGGGGGAAATATGTCATGGGGAAGGA
GAGGAGGGGCGGTAGACATGTACACATGCCGATGGTCCCAAATCTACAGT
ACACATGGTTAAGATGGCAAATAAATTTATTGGCAACAAAATCGTCGAGT
ACCGGGTACAGGGGTTATAAGAGAGTGGGCCTGTGAATCACCACACACCG
ACATGCACTTACTCCTCAAATTCTCTTCGCAATAAAATTCAGGGGCTCGA
CCAAGAGCGCAAGCGGCAGGAGGCACGTAAAGACCGGCAAATCCGGGCGT
TTTCTGACTTGCGCACGAAGGAGTTGAAATTTAAGACTGAGGTGGAGGAG
TTAGAGGTGCGTAGGAAGGTAGTGTGGAAGAAAAGGTAGGATCGGGGGAT
GGAATTATGGAGGAACTGAAAGGGCGTTGACTGTATTTTCCAGTTCAATC
TGTCATACTTTAAGCAGAGTGACTCTTTCTCATCTTTTCTCCCTCATTTG
AACACAAAACAATGTATACATGTGCAGACCAAGAAGCATCGCCTGGAAAA
ACTCGTGGCCAAGCTACTGGAAGAGGACGCGATGCTGTGTGTGAAAATCC
TGAAAGCGTCGCAATCGCAATAAATATAAAAAATGAAAAGGGAAAGCAGT
TGTAAAAAGAGCAGCAAAGGAAAGATGCAAAGAATCATAAATGAGGAAAA
GGGAAAATGACGGGGAGGG
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Coding sequence (CDS) from alignment at chr9:444195..446013-

>NO09G01360.4 ID=NO09G01360.4|Name=NO09G01360.4|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at chr9:444195..446013- (Nannochloropsis oceanica)
ATGCCCCCAACCAAGTCTCCCACAGTCACGAGTACTCCACTTACAACGTC
GCTGGATAAGCTGCCGCTAGAGTGTGATAACCATAACGACGAAAACGACG
ATATGCGAAAGGGAGAAGCATTTGTGGCCAGCAGAGGTAACACCAGCAGT
AACACGACCAGCAGTGCGCCTCCTCCTGTGCCTCCCTCAGACGATGAAGA
CCTCGCCTACACGATAGACCCCAACGGCGTGCGTGGCTTGTTTGACGTGC
AACAGAAGCGGGGCAAGACTCTGCAGCGACAGCTAGCCAGGCTGAGTGGG
CTACAACAACGCTTGAGTGCCGAACACACCGAGCTTGAGGCAGCCTACCA
CACCGCCGAAGACGAACTAAACGCGGCGGGAGAGACGGTACGTCGGCTTC
AGGACCTGGAAAAGGAATTGGAGACACGATTTAAGCGCCTGGTAGAGGCG
CATCAGTTGCGTATAGATGCGGAGGCTGCGCAGCGCGTTGCCTTGTCTAC
CGAATTGAAAGTCACGGTGGAGGAAATGGAGAATGAGCAGAGGCGGGTGC
ACGAGGAGGCAGCGACGTTACGTGCGAAGCGCCACGCTCTTGAAACGTAC
TTACGGATGGAATTTGCCGAGATCGACAAGGAGAGATTAGTAAAGGAGGA
CAGGAAGAAGGCAGCGGAGGCTGAGATAGCTGGGTACAAGGGGAACATAG
AAGAGTTGGAGGGGGCGTTTGAGGCTATGGAGGTAGAGATAAAGGAGAGA
AAATTGGTGACGCAGGAATACGACGAACGGACCGAACGTACCCGAAAGCT
GTTGTCAAAGACGAATAGTTGTGTGGACTCGCTGTTGAAAAGAGCTAAAG
GGGCGTTTGAGGAAAGGAAAGACACAGGAGGGGAAGGGGGGAATGATGGT
GGCGATGAATGGGATGAGAAAAAATGGGAGAAGAAGAGAATGGTGACAAA
ACATGATTTGGCAAGACTACAGAAGAAGGTCAAGGTAATTTTAATGGCAG
GGAGGACAGGGTGA
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Synonyms
Publications