NO09G01000.1, NO09G01000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01000.1
Unique NameNO09G01000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1320
Alignment locationchr9:336910..338229 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:336910..338229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01000.1 vs.
Match: EWM27696.1 (mitochondrial inner membrane protein oxa1l [Nannochloropsis gaditana])

HSP 1 Score: 431.0 bits (1107), Expect = 4.400e-117
Identity = 234/375 (62.40%), Postives = 280/375 (74.67%), Query Frame = 0 
Query:   64 SSYRAFSVSSSVPTTDLST--SPLSHSSLEDSTTWHAWIYDSIPVQGMQGLLETIQDTTGFPWWASIVVSTLAFRITLLPIVRYQAHALARLAKAGPLLVALNQALSKRLDGIRPGDVKATTATCKTYAAGVNAALKVHQVGLLAAVASPLIQLPVFITFALANRRMIDTHVPGLETGGLAWFEDLTEADSLLILPALCLGSTYMNLELGFARLHESQTILRFLKDNLQLLLILGAPVSSTLPAGVFVYWFTSSMYGHAQHFALRNASVREMLGFPVIPVPGASAGAPPVGTKEEKSSLPPPSESPSSSGRGGGAALVDPRLLSQALQAIKKYEIRVAARLKQKGNNRQQEGKEGDGKKQSGGPVLSTTPPPRSK 437
            S+ R FS S S P T   +  +P+S     D TTWHAW++DSIPV+ MQ LLE   + TG PWWASIV+STLAFR+ LLP+VRYQAHALARLA+A PL++ALN+ALSKRLDG+R GD   TTA C+ YAAGV AALK+HQV LLAA+ASP++QLPVF+TFALANRRMID  VPGLE GG+AWFEDLTEAD LLILP LCLGSTY+NLELGFARLHESQ ILRFLKDNLQL LILGAPVSSTLPAGVF+YWFTSS+YGHAQHFALRN  VR +LGFP +P     +G    G  +E  +      +P+ S    G   V+ R+  +ALQA+  YE R  ARLKQ  ++  +E K+ +G ++   P LS  P  +S+
Sbjct:   54 SARRGFSASPSPPPTGTPSDLAPVSQIPQIDPTTWHAWVFDSIPVRSMQTLLEVTHEATGLPWWASIVLSTLAFRLALLPVVRYQAHALARLARAAPLVLALNRALSKRLDGVRAGDWAGTTAVCQDYAAGVRAALKLHQVSLLAAIASPIVQLPVFVTFALANRRMIDQQVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGFARLHESQIILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSVYGHAQHFALRNPDVRLLLGFPTVPKERLQSG----GAAKEGPASGHTVSTPAGSEADAG-VFVEKRIFLKALQALDAYESRRKARLKQTKSD-GEELKKQEGSRKEKSPELSIRPVSKSR 422
The following BLAST results are available for this feature:
BLAST of NO09G01000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27696.14.400e-11762.40mitochondrial inner membrane protein oxa1l [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01000NO09G01000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01000.1NO09G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01000.1.cds1NO09G01000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01000.1 ID=NO09G01000.1|Name=NO09G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp
ATGATGAGGCTGGGGGGCCAAGGCACGAAGATCCTTTCAAGACGGCGGCC
ACCACCATCACCAAGCGCAGCAGAAGCAGTACATTCAAGACAAGGAGCAA
AAGCAGTGCGGCAACATTTATCAGCATGCATGGCAACATTTTCCCCTTCA
CACCGCAGAGCCCATCGCCTCGCCCCAACCTTTGCCCTGTCGTCGTACCG
AGCATTTAGCGTCTCCTCCTCAGTACCCACCACCGATCTCTCAACTTCAC
CACTATCGCATTCGTCGTTGGAAGATTCTACCACCTGGCACGCCTGGATC
TACGACTCCATCCCCGTGCAGGGCATGCAAGGCCTCCTTGAGACAATACA
GGACACCACGGGTTTTCCCTGGTGGGCGTCCATCGTCGTCTCCACCTTGG
CCTTCCGCATAACCTTGCTCCCTATTGTGAGGTACCAAGCACATGCCCTC
GCACGCTTGGCCAAGGCCGGGCCGTTGCTCGTGGCGCTGAATCAAGCCCT
TTCCAAGCGTCTCGACGGAATTCGCCCGGGGGACGTTAAGGCGACGACTG
CAACCTGCAAGACTTATGCTGCCGGGGTTAATGCCGCACTGAAGGTCCAC
CAGGTCGGACTGCTGGCTGCAGTCGCTTCGCCGTTGATTCAACTACCCGT
TTTTATAACTTTTGCGTTGGCGAATCGTCGCATGATTGACACGCACGTCC
CAGGGCTAGAAACCGGAGGCCTGGCGTGGTTTGAAGACCTAACCGAGGCC
GACTCCCTCCTTATCCTCCCTGCACTCTGCCTGGGCTCCACCTACATGAA
TTTAGAGTTGGGGTTTGCCCGCTTGCATGAATCGCAAACGATTCTGCGTT
TTCTGAAGGATAATTTACAGTTGTTGCTCATATTGGGAGCTCCGGTTTCG
TCCACCCTCCCGGCGGGTGTCTTTGTGTACTGGTTCACTTCCAGCATGTA
TGGCCATGCCCAGCATTTTGCTCTGCGCAACGCAAGTGTCCGTGAGATGT
TAGGTTTTCCTGTCATACCAGTACCAGGTGCTAGTGCGGGGGCTCCACCT
GTCGGTACAAAAGAGGAGAAGTCGTCCCTACCTCCTCCCTCGGAGTCGCC
GTCATCATCAGGAAGAGGAGGCGGGGCGGCCTTGGTCGATCCGCGGCTTT
TGTCCCAAGCGCTGCAGGCTATCAAAAAGTACGAAATAAGAGTCGCCGCT
CGTTTGAAGCAAAAGGGCAACAATCGCCAACAGGAAGGGAAGGAGGGCGA
CGGAAAGAAACAGAGCGGCGGTCCGGTGCTCTCGACTACCCCGCCACCAA
GAAGTAAAGGGGGAATGTGA
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protein sequence of NO09G01000.1

>NO09G01000.1-protein ID=NO09G01000.1-protein|Name=NO09G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MMRLGGQGTKILSRRRPPPSPSAAEAVHSRQGAKAVRQHLSACMATFSPS
HRRAHRLAPTFALSSYRAFSVSSSVPTTDLSTSPLSHSSLEDSTTWHAWI
YDSIPVQGMQGLLETIQDTTGFPWWASIVVSTLAFRITLLPIVRYQAHAL
ARLAKAGPLLVALNQALSKRLDGIRPGDVKATTATCKTYAAGVNAALKVH
QVGLLAAVASPLIQLPVFITFALANRRMIDTHVPGLETGGLAWFEDLTEA
DSLLILPALCLGSTYMNLELGFARLHESQTILRFLKDNLQLLLILGAPVS
STLPAGVFVYWFTSSMYGHAQHFALRNASVREMLGFPVIPVPGASAGAPP
VGTKEEKSSLPPPSESPSSSGRGGGAALVDPRLLSQALQAIKKYEIRVAA
RLKQKGNNRQQEGKEGDGKKQSGGPVLSTTPPPRSKGGM*
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mRNA from alignment at chr9:336910..338229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01000.1 ID=NO09G01000.1|Name=NO09G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp|location=Sequence derived from alignment at chr9:336910..338229- (Nannochloropsis oceanica)
ATGATGAGGCTGGGGGGCCAAGGCACGAAGATCCTTTCAAGACGGCGGCC
ACCACCATCACCAAGCGCAGCAGAAGCAGTACATTCAAGACAAGGAGCAA
AAGCAGTGCGGCAACATTTATCAGCATGCATGGCAACATTTTCCCCTTCA
CACCGCAGAGCCCATCGCCTCGCCCCAACCTTTGCCCTGTCGTCGTACCG
AGCATTTAGCGTCTCCTCCTCAGTACCCACCACCGATCTCTCAACTTCAC
CACTATCGCATTCGTCGTTGGAAGATTCTACCACCTGGCACGCCTGGATC
TACGACTCCATCCCCGTGCAGGGCATGCAAGGCCTCCTTGAGACAATACA
GGACACCACGGGTTTTCCCTGGTGGGCGTCCATCGTCGTCTCCACCTTGG
CCTTCCGCATAACCTTGCTCCCTATTGTGAGGTACCAAGCACATGCCCTC
GCACGCTTGGCCAAGGCCGGGCCGTTGCTCGTGGCGCTGAATCAAGCCCT
TTCCAAGCGTCTCGACGGAATTCGCCCGGGGGACGTTAAGGCGACGACTG
CAACCTGCAAGACTTATGCTGCCGGGGTTAATGCCGCACTGAAGGTCCAC
CAGGTCGGACTGCTGGCTGCAGTCGCTTCGCCGTTGATTCAACTACCCGT
TTTTATAACTTTTGCGTTGGCGAATCGTCGCATGATTGACACGCACGTCC
CAGGGCTAGAAACCGGAGGCCTGGCGTGGTTTGAAGACCTAACCGAGGCC
GACTCCCTCCTTATCCTCCCTGCACTCTGCCTGGGCTCCACCTACATGAA
TTTAGAGTTGGGGTTTGCCCGCTTGCATGAATCGCAAACGATTCTGCGTT
TTCTGAAGGATAATTTACAGTTGTTGCTCATATTGGGAGCTCCGGTTTCG
TCCACCCTCCCGGCGGGTGTCTTTGTGTACTGGTTCACTTCCAGCATGTA
TGGCCATGCCCAGCATTTTGCTCTGCGCAACGCAAGTGTCCGTGAGATGT
TAGGTTTTCCTGTCATACCAGTACCAGGTGCTAGTGCGGGGGCTCCACCT
GTCGGTACAAAAGAGGAGAAGTCGTCCCTACCTCCTCCCTCGGAGTCGCC
GTCATCATCAGGAAGAGGAGGCGGGGCGGCCTTGGTCGATCCGCGGCTTT
TGTCCCAAGCGCTGCAGGCTATCAAAAAGTACGAAATAAGAGTCGCCGCT
CGTTTGAAGCAAAAGGGCAACAATCGCCAACAGGAAGGGAAGGAGGGCGA
CGGAAAGAAACAGAGCGGCGGTCCGGTGCTCTCGACTACCCCGCCACCAA
GAAGTAAAGGGGGAATGTGA
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Coding sequence (CDS) from alignment at chr9:336910..338229-

>NO09G01000.1 ID=NO09G01000.1|Name=NO09G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr9:336910..338229- (Nannochloropsis oceanica)
ATGATGAGGCTGGGGGGCCAAGGCACGAAGATCCTTTCAAGACGGCGGCC
ACCACCATCACCAAGCGCAGCAGAAGCAGTACATTCAAGACAAGGAGCAA
AAGCAGTGCGGCAACATTTATCAGCATGCATGGCAACATTTTCCCCTTCA
CACCGCAGAGCCCATCGCCTCGCCCCAACCTTTGCCCTGTCGTCGTACCG
AGCATTTAGCGTCTCCTCCTCAGTACCCACCACCGATCTCTCAACTTCAC
CACTATCGCATTCGTCGTTGGAAGATTCTACCACCTGGCACGCCTGGATC
TACGACTCCATCCCCGTGCAGGGCATGCAAGGCCTCCTTGAGACAATACA
GGACACCACGGGTTTTCCCTGGTGGGCGTCCATCGTCGTCTCCACCTTGG
CCTTCCGCATAACCTTGCTCCCTATTGTGAGGTACCAAGCACATGCCCTC
GCACGCTTGGCCAAGGCCGGGCCGTTGCTCGTGGCGCTGAATCAAGCCCT
TTCCAAGCGTCTCGACGGAATTCGCCCGGGGGACGTTAAGGCGACGACTG
CAACCTGCAAGACTTATGCTGCCGGGGTTAATGCCGCACTGAAGGTCCAC
CAGGTCGGACTGCTGGCTGCAGTCGCTTCGCCGTTGATTCAACTACCCGT
TTTTATAACTTTTGCGTTGGCGAATCGTCGCATGATTGACACGCACGTCC
CAGGGCTAGAAACCGGAGGCCTGGCGTGGTTTGAAGACCTAACCGAGGCC
GACTCCCTCCTTATCCTCCCTGCACTCTGCCTGGGCTCCACCTACATGAA
TTTAGAGTTGGGGTTTGCCCGCTTGCATGAATCGCAAACGATTCTGCGTT
TTCTGAAGGATAATTTACAGTTGTTGCTCATATTGGGAGCTCCGGTTTCG
TCCACCCTCCCGGCGGGTGTCTTTGTGTACTGGTTCACTTCCAGCATGTA
TGGCCATGCCCAGCATTTTGCTCTGCGCAACGCAAGTGTCCGTGAGATGT
TAGGTTTTCCTGTCATACCAGTACCAGGTGCTAGTGCGGGGGCTCCACCT
GTCGGTACAAAAGAGGAGAAGTCGTCCCTACCTCCTCCCTCGGAGTCGCC
GTCATCATCAGGAAGAGGAGGCGGGGCGGCCTTGGTCGATCCGCGGCTTT
TGTCCCAAGCGCTGCAGGCTATCAAAAAGTACGAAATAAGAGTCGCCGCT
CGTTTGAAGCAAAAGGGCAACAATCGCCAACAGGAAGGGAAGGAGGGCGA
CGGAAAGAAACAGAGCGGCGGTCCGGTGCTCTCGACTACCCCGCCACCAA
GAAGTAAAGGGGGAATGTGA
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Synonyms
Publications