NO09G00520.1, NO09G00520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00520.1
Unique NameNO09G00520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1566
Alignment locationchr9:210817..212471 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:210817..212471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00520.1 vs.
Match: EWM27725.1 (tetratricopeptide repeat family protein [Nannochloropsis gaditana])

HSP 1 Score: 411.0 bits (1055), Expect = 4.000e-111
Identity = 223/342 (65.20%), Postives = 259/342 (75.73%), Query Frame = 0 
Query:   23 PMLCQGIGSMRPLERQSSAIHRHHISQRGFTVGPGRDNKKGTYLHSHAVDKAEDDECTIRQPSMETEKDVGLALREVQQLYQQGQYSEALQVSLGMRDWLERELGEDHPVYASCLNNIALMYKMTNELEDAVHYYAMALDKYKRTVGTAHRSYAATLNNLGLVFLLQAQQAEASGGKKLHAMASLESAEATLREALTIRTQVLEEDDPALLSTRSNLASVLQRTGRGAEAEEMLRTTLVLVLERTRGKKESPEVATAMNNLGYLLKAEGRWEEARVFYKDALRIRRAIFLPHHPQVIVSMNNLAELCLIIPGSEAEGKALQEEILGLLS-VNESGPGGGGNG 364
            P+    IGS        ++    H+  R F     R  +K T   +   D  +     +RQPSMETEKDVGLALREVQ LY++G+Y+EALQVSLGM+DWLERELGEDHPVYASCLNN+ALM+KMTNELEDAVHYYAMALD YKR+VG  HRSYA  LNNLGLVFL+QAQQAEA+ G K+ A+A  ESAEATLRE L IR Q+LE+DDPALL+TRSNLAS+LQRTGRG EAEEM+RTT+  V E+ RG K SPEVATAMNNLGYLLK EGR  E+R  YK+ALRIRRA++   HP VIVS+NNLAELCL+ PG E EG+ALQ+EIL LL+ V   G G    G
Sbjct:   33 PVFALMIGSCTSASILLNSPRASHVQHRLFLSSCHRSFRKETECEADLEDVDKMRNLDVRQPSMETEKDVGLALREVQDLYKEGKYTEALQVSLGMKDWLERELGEDHPVYASCLNNVALMHKMTNELEDAVHYYAMALDTYKRSVGVNHRSYATALNNLGLVFLMQAQQAEANKGGKMEALALFESAEATLREVLVIRAQLLEDDDPALLTTRSNLASILQRTGRGVEAEEMMRTTISRVQEKARG-KASPEVATAMNNLGYLLKEEGRLGESRALYKEALRIRRALYPKEHPLVIVSLNNLAELCLVTPGLEGEGRALQDEILKLLNPVRRDGDGSKSVG 373
The following BLAST results are available for this feature:
BLAST of NO09G00520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27725.14.000e-11165.20tetratricopeptide repeat family protein [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00520NO09G00520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00520.1NO09G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00520.1.cds1NO09G00520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00520.1.cds2NO09G00520.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00520.1 ID=NO09G00520.1|Name=NO09G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp
TAATGCCAGGGCCAACAGCCTGTGCATTGCGATGTTATTTAATTTTCCAC
CTGTTGTATGTATGCACGGACAAGAAAGGATAGCTTAGGGATGAAAAGGA
CGAGCAATGGCCCGCGCCCAGGAGGAGTCTACAGCGAGCAAGTTGACTTG
CAGACGTACTCACGTCAATATCTACACCTACGTTGTTGACCTACACCTAC
CACACAGGCAGAAACACATACCAAACATCCCTGTATAAAGCTGTCACAAC
CTACGGCTGGAAATGCGCGGCGTCCGAATTCTCTTGCACAGGCCATGGAC
TCTAAGCCGAGACGCGAACAGAAACGCACCCATGCTTTGTCAAGGCATCG
GTTCCATGCGACCACTTGAAAGACAATCATCTGCTATCCATCGACACCAC
ATTTCCCAAAGAGGTTTTACTGTCGGTCCTGGCAGAGACAACAAAAAGGG
GACCTACCTCCATTCCCATGCCGTGGACAAGGCCGAGGATGACGAGTGCA
CGATTCGGCAGCCGAGCATGGAGACTGAAAAGGACGTGGGACTGGCCCTG
CGCGAGGTACAGCAGCTTTATCAGCAGGGGCAGTACAGTGAAGCCTTGCA
AGTCTCCTTGGGCATGCGAGACTGGCTGGAACGAGAGCTGGGGGAAGATC
ACCCCGTTTATGCTTCGTGCTTGAACAACATTGCTTTGATGTATAAAATG
ACGAATGAATTGGAGGACGCGGTACATTATTACGCGATGGCCCTTGACAA
ATACAAACGCACCGTCGGGACCGCCCACCGGTCGTACGCTGCCACACTCA
ACAACTTGGGATTGGTCTTCTTGCTGCAAGCACAGCAAGCCGAGGCTAGC
GGCGGAAAAAAGCTTCATGCAATGGCATCCTTGGAAAGCGCAGAAGCAAC
GCTGCGGGAAGCCCTGACCATTCGTACGCAGGTCTTGGAGGAGGACGATC
CGGCGTTGCTAAGCACGAGGAGTAACCTGGCGTCGGTCTTGCAGCGTACG
GGCCGCGGAGCGGAGGCGGAGGAGATGTTGCGCACGACATTGGTGTTGGT
GTTAGAACGGACGCGGGGTAAGAAGGAGTCCCCCGAAGTGGCGACTGCCA
TGAACAACCTTGGGTATTTGCTCAAGGCGGAGGGGCGGTGGGAAGAGGCT
CGGGTTTTTTATAAGGATGCATTGCGCATTCGCCGGGCCATTTTCCTCCC
TCATCACCCCCAAGTCATTGTTTCAATGAATAATTTGGCGGAGTTGTGTT
TGATTATCCCGGGCTCGGAGGCCGAGGGCAAGGCGCTGCAGGAGGAGATT
TTGGGGTTGCTGAGTGTAAATGAGAGTGGGCCTGGTGGTGGAGGGAATGG
ATATGATGGAAAGGAAACTCGGCAAAAGTAATTCAATTGACAGAACTAGT
TTTCCCACATGAAGGACGGTGTTTAGGGTGTTGGTCTCCTTTCATTAAAA
TATGGGGCTAGAGAGTGCGGGAAGTTTTGTCATATATAACTACCCAGGCC
GGCGAGCCCGACTGATTTCTTTGAGAAAAAGATGAGGAGAAAGAGATTTC
GGATATGTGAGCATCG
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protein sequence of NO09G00520.1

>NO09G00520.1-protein ID=NO09G00520.1-protein|Name=NO09G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MRGVRILLHRPWTLSRDANRNAPMLCQGIGSMRPLERQSSAIHRHHISQR
GFTVGPGRDNKKGTYLHSHAVDKAEDDECTIRQPSMETEKDVGLALREVQ
QLYQQGQYSEALQVSLGMRDWLERELGEDHPVYASCLNNIALMYKMTNEL
EDAVHYYAMALDKYKRTVGTAHRSYAATLNNLGLVFLLQAQQAEASGGKK
LHAMASLESAEATLREALTIRTQVLEEDDPALLSTRSNLASVLQRTGRGA
EAEEMLRTTLVLVLERTRGKKESPEVATAMNNLGYLLKAEGRWEEARVFY
KDALRIRRAIFLPHHPQVIVSMNNLAELCLIIPGSEAEGKALQEEILGLL
SVNESGPGGGGNGYDGKETRQK*
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mRNA from alignment at chr9:210817..212471-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00520.1 ID=NO09G00520.1|Name=NO09G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1655bp|location=Sequence derived from alignment at chr9:210817..212471- (Nannochloropsis oceanica)
TAATGCCAGGGCCAACAGCCTGTGCATTGCGATGTTATTTAATTTTCCAC
CTGTTGTATGTATGCACGGACAAGAAAGGATAGCTTAGGGATGAAAAGGA
CGAGCAATGGCCCGCGCCCAGGAGGAGTCTACAGCGAGCAAGTTGACTTG
CAGACGTACTCACGTCAATATCTACACCTACGTTGTTGACCTACACCTAC
CACACAGGCAGAAACACATACCAAACATCCCTGTATAAAGCTGTCACAAC
CTACGGCTGGAAATGCGCGGCGTCCGAATTCTCTTGGTACGTTGAGGGGG
AGGGGAGAGGGGCGCTATTATGGAATAGCCAGCTTTGCACCCTTTCATCA
TCACAAAATCGCCCCCAAACATTAGCACAGGCCATGGACTCTAAGCCGAG
ACGCGAACAGAAACGCACCCATGCTTTGTCAAGGCATCGGTTCCATGCGA
CCACTTGAAAGACAATCATCTGCTATCCATCGACACCACATTTCCCAAAG
AGGTTTTACTGTCGGTCCTGGCAGAGACAACAAAAAGGGGACCTACCTCC
ATTCCCATGCCGTGGACAAGGCCGAGGATGACGAGTGCACGATTCGGCAG
CCGAGCATGGAGACTGAAAAGGACGTGGGACTGGCCCTGCGCGAGGTACA
GCAGCTTTATCAGCAGGGGCAGTACAGTGAAGCCTTGCAAGTCTCCTTGG
GCATGCGAGACTGGCTGGAACGAGAGCTGGGGGAAGATCACCCCGTTTAT
GCTTCGTGCTTGAACAACATTGCTTTGATGTATAAAATGACGAATGAATT
GGAGGACGCGGTACATTATTACGCGATGGCCCTTGACAAATACAAACGCA
CCGTCGGGACCGCCCACCGGTCGTACGCTGCCACACTCAACAACTTGGGA
TTGGTCTTCTTGCTGCAAGCACAGCAAGCCGAGGCTAGCGGCGGAAAAAA
GCTTCATGCAATGGCATCCTTGGAAAGCGCAGAAGCAACGCTGCGGGAAG
CCCTGACCATTCGTACGCAGGTCTTGGAGGAGGACGATCCGGCGTTGCTA
AGCACGAGGAGTAACCTGGCGTCGGTCTTGCAGCGTACGGGCCGCGGAGC
GGAGGCGGAGGAGATGTTGCGCACGACATTGGTGTTGGTGTTAGAACGGA
CGCGGGGTAAGAAGGAGTCCCCCGAAGTGGCGACTGCCATGAACAACCTT
GGGTATTTGCTCAAGGCGGAGGGGCGGTGGGAAGAGGCTCGGGTTTTTTA
TAAGGATGCATTGCGCATTCGCCGGGCCATTTTCCTCCCTCATCACCCCC
AAGTCATTGTTTCAATGAATAATTTGGCGGAGTTGTGTTTGATTATCCCG
GGCTCGGAGGCCGAGGGCAAGGCGCTGCAGGAGGAGATTTTGGGGTTGCT
GAGTGTAAATGAGAGTGGGCCTGGTGGTGGAGGGAATGGATATGATGGAA
AGGAAACTCGGCAAAAGTAATTCAATTGACAGAACTAGTTTTCCCACATG
AAGGACGGTGTTTAGGGTGTTGGTCTCCTTTCATTAAAATATGGGGCTAG
AGAGTGCGGGAAGTTTTGTCATATATAACTACCCAGGCCGGCGAGCCCGA
CTGATTTCTTTGAGAAAAAGATGAGGAGAAAGAGATTTCGGATATGTGAG
CATCG
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Coding sequence (CDS) from alignment at chr9:210817..212471-

>NO09G00520.1 ID=NO09G00520.1|Name=NO09G00520.1|organism=Nannochloropsis oceanica|type=CDS|length=1119bp|location=Sequence derived from alignment at chr9:210817..212471- (Nannochloropsis oceanica)
ATGCGCGGCGTCCGAATTCTCTTGCACAGGCCATGGACTCTAAGCCGAGA
CGCGAACAGAAACGCACCCATGCTTTGTCAAGGCATCGGTTCCATGCGAC
CACTTGAAAGACAATCATCTGCTATCCATCGACACCACATTTCCCAAAGA
GGTTTTACTGTCGGTCCTGGCAGAGACAACAAAAAGGGGACCTACCTCCA
TTCCCATGCCGTGGACAAGGCCGAGGATGACGAGTGCACGATTCGGCAGC
CGAGCATGGAGACTGAAAAGGACGTGGGACTGGCCCTGCGCGAGGTACAG
CAGCTTTATCAGCAGGGGCAGTACAGTGAAGCCTTGCAAGTCTCCTTGGG
CATGCGAGACTGGCTGGAACGAGAGCTGGGGGAAGATCACCCCGTTTATG
CTTCGTGCTTGAACAACATTGCTTTGATGTATAAAATGACGAATGAATTG
GAGGACGCGGTACATTATTACGCGATGGCCCTTGACAAATACAAACGCAC
CGTCGGGACCGCCCACCGGTCGTACGCTGCCACACTCAACAACTTGGGAT
TGGTCTTCTTGCTGCAAGCACAGCAAGCCGAGGCTAGCGGCGGAAAAAAG
CTTCATGCAATGGCATCCTTGGAAAGCGCAGAAGCAACGCTGCGGGAAGC
CCTGACCATTCGTACGCAGGTCTTGGAGGAGGACGATCCGGCGTTGCTAA
GCACGAGGAGTAACCTGGCGTCGGTCTTGCAGCGTACGGGCCGCGGAGCG
GAGGCGGAGGAGATGTTGCGCACGACATTGGTGTTGGTGTTAGAACGGAC
GCGGGGTAAGAAGGAGTCCCCCGAAGTGGCGACTGCCATGAACAACCTTG
GGTATTTGCTCAAGGCGGAGGGGCGGTGGGAAGAGGCTCGGGTTTTTTAT
AAGGATGCATTGCGCATTCGCCGGGCCATTTTCCTCCCTCATCACCCCCA
AGTCATTGTTTCAATGAATAATTTGGCGGAGTTGTGTTTGATTATCCCGG
GCTCGGAGGCCGAGGGCAAGGCGCTGCAGGAGGAGATTTTGGGGTTGCTG
AGTGTAAATGAGAGTGGGCCTGGTGGTGGAGGGAATGGATATGATGGAAA
GGAAACTCGGCAAAAGTAA
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Synonyms
Publications