NO08G04130.4, NO08G04130.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04130.4
Unique NameNO08G04130.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2486
Alignment locationchr8:1185892..1188995 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1185892..1188995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04130.4 vs.
Match: XP_009038148.1 (hypothetical protein AURANDRAFT_11914, partial [Aureococcus anophagefferens]; EGB06904.1 hypothetical protein AURANDRAFT_11914, partial [Aureococcus anophagefferens])

HSP 1 Score: 244.2 bits (622), Expect = 5.800e-61
Identity = 144/336 (42.86%), Postives = 199/336 (59.23%), Query Frame = 0 
Query:    1 MELERHPFSVIKHEGNYSGVGFAMN----DETVTPEEVGAHVLRRLLDMTADYLGHRQVTKAVIAVPAKFNSRQKRATGEAYMRAGLKVMRVLEEPTAAAIAYGLHQKPNVHHILVYDFGGGTLDVSLLYVHEGFVTVEGIDGDDHLGGADFDHCLSHHLVATYGDVTSSIPSSSSLYDLEAGLGEGKEALFFDDDGDIPSSNSTRSSSPHALHDCASYTMLSIAEHLKKRLSSSPSASFSCLSNKK--DGGLSKNITVTRQAFEKACADVFARALAPVDLCLESNGMATSEIDEVVMVGGTTRIPKVREMLRVHLQVASLNTHIDPDITVAVGTA 331
            ++ +++ F V+K + N +G  FA++        TP +VGA V++ L+    D LGH  V +AVIAVPA F   Q  ATG+A+  AGLKV RV+ EP AAA+AYGLH+K +V+H+LVYDFGGGTLDVS+LYV +G + V    GD+ LGG DFD C++  L A   DV +   +  S+    A   E +E L                        CA + + S+ E LK  +S + SA  +CL+ ++  D  +      TR+ FEKAC  +F RA+  V   L+   +   +IDEVVMVGGT+R+P+VR+ LR HL+V  LNT IDPD+TVAVG A
Sbjct:   81 LQAKKYTFEVVK-DANSTGCAFALDVPGHPAAATPVDVGAEVVKALMRTVHDDLGHENVKRAVIAVPASFGPAQIAATGDAFKAAGLKVARVMPEPVAAAVAYGLHKKKDVNHVLVYDFGGGTLDVSILYVQDGSIEVVANGGDNDLGGTDFDQCVAEDLAA---DVAARTGAGDSV--ARAAGCEAREPL------------------------CARHVLASMGERLKIAVSDAASADAACLAPRESCDDLVRVEFAYTRKRFEKACDHLFVRAIDTVARTLDEGMLTHRDIDEVVMVGGTSRVPRVRDTLRDHLRVDKLNTEIDPDVTVAVGAA 386
The following BLAST results are available for this feature:
BLAST of NO08G04130.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009038148.15.800e-6142.86hypothetical protein AURANDRAFT_11914, partial [Au... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04130NO08G04130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04130.4NO08G04130.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04130.4.cds1NO08G04130.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04130.4.cds2NO08G04130.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04130.4.cds3NO08G04130.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04130.4.cds4NO08G04130.4.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04130.4.cds5NO08G04130.4.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04130.4 ID=NO08G04130.4|Name=NO08G04130.4|organism=Nannochloropsis oceanica|type=mRNA|length=2486bp
CTTTAAATAGGGACGGGCGGCTGCACTTTCCCTGCCTAAACTTTGCGAAG
TCCACACAGCTCCATCCAACCCGAGCTGCCGACGGACACGACTCGTTCTA
CAAGACTCTCATAGGACAGCGAGGGGCAGCCATGGACAGTGCGGCTGGTC
GAATTGCCATTCTCATTCCTGTGCTAGGTGGTACGTACAAACTGCGAAAA
TATGCCTTCTTCGCCCTCGACTCAATTACATCTTTTTCCCTTTCATTCCC
TCTCACCTATTTCGCAGTGGCCATCTGTGCGGGTATGGCTGCCTTTGGAT
TCAAGGGGAGGGTCAATGTCGTTGGAGTCGACCTCGGCACGACCTTCTCT
GTTGTAGCCGTCAACGAGCACGGCACCGTCCGAGTCATCAAAGATAAATA
TGGTGATCCTCTCGTGCCTTCCATCGTGTCGTTTGCGCCGGGCGGAAACG
TGTTGGTGGGGAAAGAGGCGAGGAGACGGCTTGCTCTCGATCCAACACAC
ACCATTTACGACGCCAAGCGGTTCATTGGTCGAGAGTACGAGTACTGGGA
GGGGAGAGGGACGAGGAAGAGAGGAGTTATATGCGTTAAATAGGGCATCA
TTCAGCTAATTTGAGGCGTGTGTCTTGTGCCTGGGTCGATTCCTCATGCA
CATCCTCTTCTCCGCCCCTCCCTCCCTCCGTGCCTCCTTCACGCCCCTCA
CAGTTTCGACGATCCTACCGTACGTATGGAGCTGGAGCGTCACCCCTTCT
CGGTGATTAAGCACGAAGGCAACTATTCGGGTGTTGGCTTTGCTATGAAT
GACGAGACTGTAACGCCTGAGGAAGTGGGGGCACACGTGCTTCGGCGATT
GCTGGATATGACTGCTGACTATCTCGGCCATCGACAGGTGACCAAGGCCG
TGATTGCAGTTCCCGCCAAATTCAACTCGCGTCAAAAACGCGCCACTGGT
GAGGCATACATGCGCGCGGGGCTCAAGGTAATGCGCGTCTTGGAAGAGCC
AACAGCTGCTGCGATCGCATACGGGCTGCATCAAAAACCCAATGTCCACC
ACATTCTGGTCTATGACTTTGGGGGGGGCACACTTGACGTATCGCTCTTA
TATGTGCACGAGGGCTTTGTGACGGTGGAGGGCATTGATGGCGATGATCA
CTTGGGGGGTGCGGACTTCGATCATTGCCTTTCCCACCATCTAGTAGCTA
CCTACGGCGATGTCACATCCTCTATACCCTCGTCTTCTTCCCTGTACGAC
CTTGAAGCAGGGCTAGGTGAAGGAAAGGAAGCATTGTTCTTCGATGACGA
TGGAGACATACCTTCCTCTAACTCCACTCGTTCCTCCTCTCCTCATGCCC
TCCATGACTGTGCATCCTACACCATGCTCTCCATCGCTGAGCACTTGAAG
AAGCGCCTCTCTTCTTCTCCCTCTGCCTCTTTTTCTTGCCTGTCCAACAA
GAAGGACGGTGGTCTATCAAAGAACATCACAGTAACCCGGCAAGCCTTCG
AGAAGGCGTGCGCTGACGTATTTGCGAGGGCCCTTGCTCCGGTAGATTTG
TGTTTGGAAAGCAATGGAATGGCGACGAGTGAAATCGATGAGGTCGTCAT
GGTGGGGGGTACCACACGAATACCCAAAGTGAGAGAGATGCTGCGAGTGC
ACCTCCAAGTGGCAAGTTTGAACACACACATTGACCCGGACATAACGGTG
GCAGTAGGTACAGCGTGCGTGGTAGACTAGAAGAAATACGGAGAGAAATA
GGGGAAATATGGAAACGTATGCATAAAACGTCTAAAGTAAAGAAGCTTAG
AAACGCTGCACACTTTCAATTGTTGTAACATGCTCTCGTTGGTGTCATTC
ATAATTTGAATTATCTTTGTAAGCTCTACCATTTTTCTGCCATACACGGA
GTCCGAAATGTACAAGAAGAAAAACCGAAAAAGTTACAATTCCTAAATTC
AATTCCCGAGCTGTATCGATGGCAAATGTGAACACGAGCAAGTCGCTTTT
TCATGTACGCCTCACTGTGTACTAGACTCCATGGCCGATCGTAGATCGTC
TTTATTATTGGACATTCATTCCTCTTCTGAAACATGTTAAAGAGCGGTGG
GACATTTGAAGCTACGATAAATGTGGGCAGTTCATCTCGTGATTTCCAAA
GAAGCGCACTCTCACAATAGATAAAGGGGGGACGCAAGGGACATGAAAAC
CTCTCCTTGGCTTGAATGAATGCTCCACAGAGTAGACAATGAATTGAATG
CTGAACTTGGATTCCACACGAAGCCATCCAATGAGAGGCGGAAAATGCGC
AAAGACAGTACCTGCTCCTTGGTGACAGACAGAATGCTTGCCTTTGTCCA
TCTCTTCAAGAACGTCCTTCAACCTTATTTACCGGAACTCTTTTTTGGCC
ATAGGGGTGCTCTGTTTTTCGAGCCCTCTAAGATACACTCCATTACATGC
TCACCGACCTTTTTCTTCTGGGGGGTGGGTGGGTGG
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protein sequence of NO08G04130.4

>NO08G04130.4-protein ID=NO08G04130.4-protein|Name=NO08G04130.4|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MELERHPFSVIKHEGNYSGVGFAMNDETVTPEEVGAHVLRRLLDMTADYL
GHRQVTKAVIAVPAKFNSRQKRATGEAYMRAGLKVMRVLEEPTAAAIAYG
LHQKPNVHHILVYDFGGGTLDVSLLYVHEGFVTVEGIDGDDHLGGADFDH
CLSHHLVATYGDVTSSIPSSSSLYDLEAGLGEGKEALFFDDDGDIPSSNS
TRSSSPHALHDCASYTMLSIAEHLKKRLSSSPSASFSCLSNKKDGGLSKN
ITVTRQAFEKACADVFARALAPVDLCLESNGMATSEIDEVVMVGGTTRIP
KVREMLRVHLQVASLNTHIDPDITVAVGTACVVD*
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mRNA from alignment at chr8:1185892..1188995+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04130.4 ID=NO08G04130.4|Name=NO08G04130.4|organism=Nannochloropsis oceanica|type=mRNA|length=3104bp|location=Sequence derived from alignment at chr8:1185892..1188995+ (Nannochloropsis oceanica)
CTTTAAATAGGGACGGGCGGCTGCACTTTCCCTGCCTAAACTTTGCGAAG
TCCACACAGCTCCATCCAACCCGAGCTGCCGACGGACACGACTCGTTCTA
CAAGACTCTCATAGGACAGCGAGGGGCAGCCATGGACAGTGCGGCTGGTC
GAATTGCCATTCTCATTCCTGTGCTAGGTGGTACGTACAAACTGCGAAAA
TATGCCTTCTTCGCCCTCGACTCAATTACATCTTTTTCCCTTTCATTCCC
TCTCACCTATTTCGCAGTGGCCATCTGTGCGGGTATGGCTGCCTTTGGAT
TCAAGGGGAGGGTCAATGTCGTTGGTACGTCCGTAATCTTTTTGGATTAT
CTTAGCGGTGCTTGGGTTTGTGGGAAGATGCGCTATGGCCCTCACAGTAC
TCCCTTCCTCCCTCCTTCACCCCTTCAGGAGTCGACCTCGGCACGACCTT
CTCTGTTGTAGCCGTCAACGAGCACGGCACCGTCCGAGTCATCAAAGATA
AATATGGTGATCCTCTCGTGCCTTCCATCGTGTCGTTTGCGCCGGGCGGA
AACGTGTTGGTGGGGAAAGAGGCGAGGAGACGGCTTGCTCTCGATCCAAC
ACACACCATTTACGACGCCAAGCGGTTCATTGGTCGAGAGTACGAGTACT
GGGAGGGGAGAGGGACGAGGAAGAGAGGAGTTATATGCGTTAAATAGGGC
ATCATTCAGCTAATTTGAGGCGTGTGTCTTGTGCCTGGGTCGATTCCTCA
TGCACATCCTCTTCTCCGCCCCTCCCTCCCTCCGTGCCTCCTTCACGCCC
CTCACAGTTTCGACGATCCTACCGTACGTATGGAGCTGGAGCGTCACCCC
TTCTCGGTGATTAAGCACGAAGGCAACTATTCGGGTGTTGGCTTTGCTAT
GAATGACGAGGTGCGGAGAGCGGAGGAGCTGAGGGAGGGAGGGCAGGGAG
GATAGCTGGGTGAAGACGACCTCAGTTTCCAATTCTTTGGTCTTAGTCCC
CCTCTCCTTGATCTCGTTTTTCCATAGACTGTAACGCCTGAGGAAGTGGG
GGCACACGTGCTTCGGCGATTGCTGGATATGACTGCTGACTATCTCGGCC
ATCGACAGGTAGGGAGGAGGGGAGTGAGGGAGGGAGGAAGGCAGGGACGG
TGAGCGAGCAGGATGTGGGAGGAGATTAAATGGCGATTGACGGAATCTCT
TCCTCCCATCGTCGCTCCTACCTCTCACAGGTGACCAAGGCCGTGATTGC
AGTTCCCGCCAAATTCAACTCGCGTCAAAAACGCGCCACTGGTGAGGCAT
ACATGCGCGCGGGGCTCAAGGTAATCAGGAAATCAGGGAGAAGGAAATCG
TGAAACGTCGCTACGAAAGGAATGGGGGAGAAATTTATTTATTTTTTCTT
CCCTCACTCCCCCCCTCCCTCCCCACAGGTAATGCGCGTCTTGGAAGAGC
CAACAGCTGCTGCGATCGCATACGGGCTGCATCAAAAACCCAATGTCCAC
CACATTCTGGTCTATGACTTTGGGGGGGGCACACTTGACGTATCGCTCTT
ATATGTGCACGAGGGCTTTGTGACGGTGGAGGGCATTGATGGCGATGATC
ACTTGGGGGGTAAGTTTTTTTAATTCCTCTCCACCTTTAAAAATTCCTTA
TTTGTGTAATATAATCTGTGTGTATCTTTTGCGAGCGTTTTGGAGGTAGG
TGCCAAGGGGAGTGGAGGCAGGATGCGCCAGTTATACGTAACACCATATT
TATTTATACAAACTGTTGTACATTAGGTGCGGACTTCGATCATTGCCTTT
CCCACCATCTAGTAGCTACCTACGGCGATGTCACATCCTCTATACCCTCG
TCTTCTTCCCTGTACGACCTTGAAGCAGGGCTAGGTGAAGGAAAGGAAGC
ATTGTTCTTCGATGACGATGGAGACATACCTTCCTCTAACTCCACTCGTT
CCTCCTCTCCTCATGCCCTCCATGACTGTGCATCCTACACCATGCTCTCC
ATCGCTGAGCACTTGAAGAAGCGCCTCTCTTCTTCTCCCTCTGCCTCTTT
TTCTTGCCTGTCCAACAAGAAGGACGGTGGTCTATCAAAGAACATCACAG
TAACCCGGCAAGCCTTCGAGAAGGCGTGCGCTGACGTATTTGCGAGGGCC
CTTGCTCCGGTAGATTTGTGTTTGGAAAGCAATGGAATGGCGACGAGTGA
AATCGATGAGGTCGTCATGGTGGGGGGTACCACACGAATACCCAAAGTGA
GAGAGATGCTGCGAGTGCACCTCCAAGTGGCAAGTTTGAACACACACATT
GACCCGGACATAACGGTGGCAGTAGGTACAGCGTGCGTGGTAGACTAGAA
GAAATACGGAGAGAAATAGGGGAAATATGGAAACGTATGCATAAAACGTC
TAAAGTAAAGAAGCTTAGAAACGCTGCACACTTTCAATTGTTGTAACATG
CTCTCGTTGGTGTCATTCATAATTTGAATTATCTTTGTAAGCTCTACCAT
TTTTCTGCCATACACGGAGTCCGAAATGTACAAGAAGAAAAACCGAAAAA
GTTACAATTCCTAAATTCAATTCCCGAGCTGTATCGATGGCAAATGTGAA
CACGAGCAAGTCGCTTTTTCATGTACGCCTCACTGTGTACTAGACTCCAT
GGCCGATCGTAGATCGTCTTTATTATTGGACATTCATTCCTCTTCTGAAA
CATGTTAAAGAGCGGTGGGACATTTGAAGCTACGATAAATGTGGGCAGTT
CATCTCGTGATTTCCAAAGAAGCGCACTCTCACAATAGATAAAGGGGGGA
CGCAAGGGACATGAAAACCTCTCCTTGGCTTGAATGAATGCTCCACAGAG
TAGACAATGAATTGAATGCTGAACTTGGATTCCACACGAAGCCATCCAAT
GAGAGGCGGAAAATGCGCAAAGACAGTACCTGCTCCTTGGTGACAGACAG
AATGCTTGCCTTTGTCCATCTCTTCAAGAACGTCCTTCAACCTTATTTAC
CGGAACTCTTTTTTGGCCATAGGGGTGCTCTGTTTTTCGAGCCCTCTAAG
ATACACTCCATTACATGCTCACCGACCTTTTTCTTCTGGGGGGTGGGTGG
GTGG
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Coding sequence (CDS) from alignment at chr8:1185892..1188995+

>NO08G04130.4 ID=NO08G04130.4|Name=NO08G04130.4|organism=Nannochloropsis oceanica|type=CDS|length=1005bp|location=Sequence derived from alignment at chr8:1185892..1188995+ (Nannochloropsis oceanica)
ATGGAGCTGGAGCGTCACCCCTTCTCGGTGATTAAGCACGAAGGCAACTA
TTCGGGTGTTGGCTTTGCTATGAATGACGAGACTGTAACGCCTGAGGAAG
TGGGGGCACACGTGCTTCGGCGATTGCTGGATATGACTGCTGACTATCTC
GGCCATCGACAGGTGACCAAGGCCGTGATTGCAGTTCCCGCCAAATTCAA
CTCGCGTCAAAAACGCGCCACTGGTGAGGCATACATGCGCGCGGGGCTCA
AGGTAATGCGCGTCTTGGAAGAGCCAACAGCTGCTGCGATCGCATACGGG
CTGCATCAAAAACCCAATGTCCACCACATTCTGGTCTATGACTTTGGGGG
GGGCACACTTGACGTATCGCTCTTATATGTGCACGAGGGCTTTGTGACGG
TGGAGGGCATTGATGGCGATGATCACTTGGGGGGTGCGGACTTCGATCAT
TGCCTTTCCCACCATCTAGTAGCTACCTACGGCGATGTCACATCCTCTAT
ACCCTCGTCTTCTTCCCTGTACGACCTTGAAGCAGGGCTAGGTGAAGGAA
AGGAAGCATTGTTCTTCGATGACGATGGAGACATACCTTCCTCTAACTCC
ACTCGTTCCTCCTCTCCTCATGCCCTCCATGACTGTGCATCCTACACCAT
GCTCTCCATCGCTGAGCACTTGAAGAAGCGCCTCTCTTCTTCTCCCTCTG
CCTCTTTTTCTTGCCTGTCCAACAAGAAGGACGGTGGTCTATCAAAGAAC
ATCACAGTAACCCGGCAAGCCTTCGAGAAGGCGTGCGCTGACGTATTTGC
GAGGGCCCTTGCTCCGGTAGATTTGTGTTTGGAAAGCAATGGAATGGCGA
CGAGTGAAATCGATGAGGTCGTCATGGTGGGGGGTACCACACGAATACCC
AAAGTGAGAGAGATGCTGCGAGTGCACCTCCAAGTGGCAAGTTTGAACAC
ACACATTGACCCGGACATAACGGTGGCAGTAGGTACAGCGTGCGTGGTAG
ACTAG
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Synonyms
Publications