NO08G04130.1, NO08G04130.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G04130.1
Unique Name	NO08G04130.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2231
Alignment location	chr8:1185892..1188995 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:1185892..1188995 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G04130.1 vs.
Match: CBJ30106.1 (Similarities to Heat shock protein 70-probable alternative splicing [Ectocarpus siliculosus])

HSP 1 Score: 347.1 bits (889), Expect = 8.400e-92
Identity = 204/462 (44.16%), Postives = 275/462 (59.52%), Query Frame = 0

Query:   11 LIPVLGVAICAGMAAFGFKGRVNVVGVDLGTTFSVVAVNEHGTVRVIKDKYGDPLVPSIVSFAPGGNVLVGKEARRRLALDPTHTIYDAKRFIGRDFDDPTVRMELERHPFSVIKHEGNYSGVGFAM----NDETVTPEEVGAHVLRRLLDMTADYLGHRQVTKAVIAVPAKFNSRQKRATGEAYMRAGLKVMRVLEEPTAAAIAYGLHQKPNVHHILVYDFGGGTLDVSLLYVHEGFVTVEGIDGDDHLGGADFDHCLSHHLV---------------ATYGDVTSSIPSSSSLYDLEAGL------GE--GKEALFFDDDGDIPSSNSTRSSSPHALHDCASYTMLSIAEHLKKRLSSSPSASFSCLSNKKDGGLSKNITVTRQAFEKACADVFARALAPVDLCLESNGMATSEIDEVVMVGGTTRIPKVREMLRVHLQVASLNTHIDPDITVAVGTACV 446
            ++  + V  CA +AA GF+GR  VVG+DLGTTFSV+ VNE G + +I    G PL+PS+VSF   G V VG++A + L   P +TIY AKRFIGR+F D  V  E   H F +++ + + S   F +    +  +V+P+ VG+HVL  LL   A YLGH QV+KAVIAVPAKF++RQK AT EA+  AGL+V+R+LEEPTAAA+A+GLH+KPNV+HILVYD GGGTLDVSLL+V++G V V G DGDD+LGG+DFD C++H L                A     T+   +  +LY L  GL      GE    E +   ++    +  S +  +P    D       + AE  + ++ +S S                 + +TR  +E++CA +F R +APVD  L    +   EIDEVVMVGG TR P+VR +L  HL V  LN  IDPD+ VA G A +
Sbjct:    6 VVAAVVVGACAALAATGFRGRQTVVGIDLGTTFSVIGVNEGGKIAIIPGAEGSPLLPSVVSFLDNGRVAVGQDATKLLESQPANTIYGAKRFIGREFSDSAVSEEAAEHQFQLVQTKEDLSEAWFKIKRSGHPPSVSPQMVGSHVLGELLQRAAVYLGHSQVSKAVIAVPAKFDARQKAATVEAFRLAGLQVIRMLEEPTAAALAFGLHRKPNVNHILVYDLGGGTLDVSLLFVNDGSVEVLGSDGDDNLGGSDFDQCVAHLLERKLDRSIVALEEAEDAVSCGFTTPTCALHNLYPLSEGLRRLLTDGETAAVECMIPPEEAQRRNLRSPKKGTPSEDGDSQDAHRFAGAEGERCKMWNSLS-----------------LELTRTEYEQSCASLFDRGVAPVDRLLHHLDLTVDEIDEVVMVGGMTRTPRVRSLLESHLGVDRLNVDIDPDVVVAYGAATI 450

The following BLAST results are available for this feature:

BLAST of NO08G04130.1 vs.

BLAST of NO08G04130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBJ30106.1	8.400e-92	44.16	Similarities to Heat shock protein 70-probable alt...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G04130	NO08G04130	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G04130.1	NO08G04130.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G04130.1.cds1	NO08G04130.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04130.1.cds2	NO08G04130.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04130.1.cds3	NO08G04130.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04130.1.cds4	NO08G04130.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04130.1.cds5	NO08G04130.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04130.1.cds6	NO08G04130.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04130.1.cds7	NO08G04130.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04130.1.cds8	NO08G04130.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:1185892..1188995+
coding sequence from alignment at chr8:1185892..1188995+

mRNA sequence

>NO08G04130.1 ID=NO08G04130.1|Name=NO08G04130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2231bp
CTTTAAATAGGGACGGGCGGCTGCACTTTCCCTGCCTAAACTTTGCGAAG
TCCACACAGCTCCATCCAACCCGAGCTGCCGACGGACACGACTCGTTCTA
CAAGACTCTCATAGGACAGCGAGGGGCAGCCATGGACAGTGCGGCTGGTC
GAATTGCCATTCTCATTCCTGTGCTAGGTGTGGCCATCTGTGCGGGTATG
GCTGCCTTTGGATTCAAGGGGAGGGTCAATGTCGTTGGAGTCGACCTCGG
CACGACCTTCTCTGTTGTAGCCGTCAACGAGCACGGCACCGTCCGAGTCA
TCAAAGATAAATATGGTGATCCTCTCGTGCCTTCCATCGTGTCGTTTGCG
CCGGGCGGAAACGTGTTGGTGGGGAAAGAGGCGAGGAGACGGCTTGCTCT
CGATCCAACACACACCATTTACGACGCCAAGCGGTTCATTGGTCGAGATT
TCGACGATCCTACCGTACGTATGGAGCTGGAGCGTCACCCCTTCTCGGTG
ATTAAGCACGAAGGCAACTATTCGGGTGTTGGCTTTGCTATGAATGACGA
GACTGTAACGCCTGAGGAAGTGGGGGCACACGTGCTTCGGCGATTGCTGG
ATATGACTGCTGACTATCTCGGCCATCGACAGGTGACCAAGGCCGTGATT
GCAGTTCCCGCCAAATTCAACTCGCGTCAAAAACGCGCCACTGGTGAGGC
ATACATGCGCGCGGGGCTCAAGGTAATGCGCGTCTTGGAAGAGCCAACAG
CTGCTGCGATCGCATACGGGCTGCATCAAAAACCCAATGTCCACCACATT
CTGGTCTATGACTTTGGGGGGGGCACACTTGACGTATCGCTCTTATATGT
GCACGAGGGCTTTGTGACGGTGGAGGGCATTGATGGCGATGATCACTTGG
GGGGTGCGGACTTCGATCATTGCCTTTCCCACCATCTAGTAGCTACCTAC
GGCGATGTCACATCCTCTATACCCTCGTCTTCTTCCCTGTACGACCTTGA
AGCAGGGCTAGGTGAAGGAAAGGAAGCATTGTTCTTCGATGACGATGGAG
ACATACCTTCCTCTAACTCCACTCGTTCCTCCTCTCCTCATGCCCTCCAT
GACTGTGCATCCTACACCATGCTCTCCATCGCTGAGCACTTGAAGAAGCG
CCTCTCTTCTTCTCCCTCTGCCTCTTTTTCTTGCCTGTCCAACAAGAAGG
ACGGTGGTCTATCAAAGAACATCACAGTAACCCGGCAAGCCTTCGAGAAG
GCGTGCGCTGACGTATTTGCGAGGGCCCTTGCTCCGGTAGATTTGTGTTT
GGAAAGCAATGGAATGGCGACGAGTGAAATCGATGAGGTCGTCATGGTGG
GGGGTACCACACGAATACCCAAAGTGAGAGAGATGCTGCGAGTGCACCTC
CAAGTGGCAAGTTTGAACACACACATTGACCCGGACATAACGGTGGCAGT
AGGTACAGCGTGCGTGGTAGACTAGAAGAAATACGGAGAGAAATAGGGGA
AATATGGAAACGTATGCATAAAACGTCTAAAGTAAAGAAGCTTAGAAACG
CTGCACACTTTCAATTGTTGTAACATGCTCTCGTTGGTGTCATTCATAAT
TTGAATTATCTTTGTAAGCTCTACCATTTTTCTGCCATACACGGAGTCCG
AAATGTACAAGAAGAAAAACCGAAAAAGTTACAATTCCTAAATTCAATTC
CCGAGCTGTATCGATGGCAAATGTGAACACGAGCAAGTCGCTTTTTCATG
TACGCCTCACTGTGTACTAGACTCCATGGCCGATCGTAGATCGTCTTTAT
TATTGGACATTCATTCCTCTTCTGAAACATGTTAAAGAGCGGTGGGACAT
TTGAAGCTACGATAAATGTGGGCAGTTCATCTCGTGATTTCCAAAGAAGC
GCACTCTCACAATAGATAAAGGGGGGACGCAAGGGACATGAAAACCTCTC
CTTGGCTTGAATGAATGCTCCACAGAGTAGACAATGAATTGAATGCTGAA
CTTGGATTCCACACGAAGCCATCCAATGAGAGGCGGAAAATGCGCAAAGA
CAGTACCTGCTCCTTGGTGACAGACAGAATGCTTGCCTTTGTCCATCTCT
TCAAGAACGTCCTTCAACCTTATTTACCGGAACTCTTTTTTGGCCATAGG
GGTGCTCTGTTTTTCGAGCCCTCTAAGATACACTCCATTACATGCTCACC
GACCTTTTTCTTCTGGGGGGTGGGTGGGTGG

protein sequence of NO08G04130.1

>NO08G04130.1-protein ID=NO08G04130.1-protein|Name=NO08G04130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MDSAAGRIAILIPVLGVAICAGMAAFGFKGRVNVVGVDLGTTFSVVAVNE
HGTVRVIKDKYGDPLVPSIVSFAPGGNVLVGKEARRRLALDPTHTIYDAK
RFIGRDFDDPTVRMELERHPFSVIKHEGNYSGVGFAMNDETVTPEEVGAH
VLRRLLDMTADYLGHRQVTKAVIAVPAKFNSRQKRATGEAYMRAGLKVMR
VLEEPTAAAIAYGLHQKPNVHHILVYDFGGGTLDVSLLYVHEGFVTVEGI
DGDDHLGGADFDHCLSHHLVATYGDVTSSIPSSSSLYDLEAGLGEGKEAL
FFDDDGDIPSSNSTRSSSPHALHDCASYTMLSIAEHLKKRLSSSPSASFS
CLSNKKDGGLSKNITVTRQAFEKACADVFARALAPVDLCLESNGMATSEI
DEVVMVGGTTRIPKVREMLRVHLQVASLNTHIDPDITVAVGTACVVD*

mRNA from alignment at chr8:1185892..1188995+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G04130.1 ID=NO08G04130.1|Name=NO08G04130.1|organism=Nannochloropsis oceanica|type=mRNA|length=3104bp|location=Sequence derived from alignment at chr8:1185892..1188995+ (Nannochloropsis oceanica)
CTTTAAATAGGGACGGGCGGCTGCACTTTCCCTGCCTAAACTTTGCGAAG
TCCACACAGCTCCATCCAACCCGAGCTGCCGACGGACACGACTCGTTCTA
CAAGACTCTCATAGGACAGCGAGGGGCAGCCATGGACAGTGCGGCTGGTC
GAATTGCCATTCTCATTCCTGTGCTAGGTGGTACGTACAAACTGCGAAAA
TATGCCTTCTTCGCCCTCGACTCAATTACATCTTTTTCCCTTTCATTCCC
TCTCACCTATTTCGCAGTGGCCATCTGTGCGGGTATGGCTGCCTTTGGAT
TCAAGGGGAGGGTCAATGTCGTTGGTACGTCCGTAATCTTTTTGGATTAT
CTTAGCGGTGCTTGGGTTTGTGGGAAGATGCGCTATGGCCCTCACAGTAC
TCCCTTCCTCCCTCCTTCACCCCTTCAGGAGTCGACCTCGGCACGACCTT
CTCTGTTGTAGCCGTCAACGAGCACGGCACCGTCCGAGTCATCAAAGATA
AATATGGTGATCCTCTCGTGCCTTCCATCGTGTCGTTTGCGCCGGGCGGA
AACGTGTTGGTGGGGAAAGAGGCGAGGAGACGGCTTGCTCTCGATCCAAC
ACACACCATTTACGACGCCAAGCGGTTCATTGGTCGAGAGTACGAGTACT
GGGAGGGGAGAGGGACGAGGAAGAGAGGAGTTATATGCGTTAAATAGGGC
ATCATTCAGCTAATTTGAGGCGTGTGTCTTGTGCCTGGGTCGATTCCTCA
TGCACATCCTCTTCTCCGCCCCTCCCTCCCTCCGTGCCTCCTTCACGCCC
CTCACAGTTTCGACGATCCTACCGTACGTATGGAGCTGGAGCGTCACCCC
TTCTCGGTGATTAAGCACGAAGGCAACTATTCGGGTGTTGGCTTTGCTAT
GAATGACGAGGTGCGGAGAGCGGAGGAGCTGAGGGAGGGAGGGCAGGGAG
GATAGCTGGGTGAAGACGACCTCAGTTTCCAATTCTTTGGTCTTAGTCCC
CCTCTCCTTGATCTCGTTTTTCCATAGACTGTAACGCCTGAGGAAGTGGG
GGCACACGTGCTTCGGCGATTGCTGGATATGACTGCTGACTATCTCGGCC
ATCGACAGGTAGGGAGGAGGGGAGTGAGGGAGGGAGGAAGGCAGGGACGG
TGAGCGAGCAGGATGTGGGAGGAGATTAAATGGCGATTGACGGAATCTCT
TCCTCCCATCGTCGCTCCTACCTCTCACAGGTGACCAAGGCCGTGATTGC
AGTTCCCGCCAAATTCAACTCGCGTCAAAAACGCGCCACTGGTGAGGCAT
ACATGCGCGCGGGGCTCAAGGTAATCAGGAAATCAGGGAGAAGGAAATCG
TGAAACGTCGCTACGAAAGGAATGGGGGAGAAATTTATTTATTTTTTCTT
CCCTCACTCCCCCCCTCCCTCCCCACAGGTAATGCGCGTCTTGGAAGAGC
CAACAGCTGCTGCGATCGCATACGGGCTGCATCAAAAACCCAATGTCCAC
CACATTCTGGTCTATGACTTTGGGGGGGGCACACTTGACGTATCGCTCTT
ATATGTGCACGAGGGCTTTGTGACGGTGGAGGGCATTGATGGCGATGATC
ACTTGGGGGGTAAGTTTTTTTAATTCCTCTCCACCTTTAAAAATTCCTTA
TTTGTGTAATATAATCTGTGTGTATCTTTTGCGAGCGTTTTGGAGGTAGG
TGCCAAGGGGAGTGGAGGCAGGATGCGCCAGTTATACGTAACACCATATT
TATTTATACAAACTGTTGTACATTAGGTGCGGACTTCGATCATTGCCTTT
CCCACCATCTAGTAGCTACCTACGGCGATGTCACATCCTCTATACCCTCG
TCTTCTTCCCTGTACGACCTTGAAGCAGGGCTAGGTGAAGGAAAGGAAGC
ATTGTTCTTCGATGACGATGGAGACATACCTTCCTCTAACTCCACTCGTT
CCTCCTCTCCTCATGCCCTCCATGACTGTGCATCCTACACCATGCTCTCC
ATCGCTGAGCACTTGAAGAAGCGCCTCTCTTCTTCTCCCTCTGCCTCTTT
TTCTTGCCTGTCCAACAAGAAGGACGGTGGTCTATCAAAGAACATCACAG
TAACCCGGCAAGCCTTCGAGAAGGCGTGCGCTGACGTATTTGCGAGGGCC
CTTGCTCCGGTAGATTTGTGTTTGGAAAGCAATGGAATGGCGACGAGTGA
AATCGATGAGGTCGTCATGGTGGGGGGTACCACACGAATACCCAAAGTGA
GAGAGATGCTGCGAGTGCACCTCCAAGTGGCAAGTTTGAACACACACATT
GACCCGGACATAACGGTGGCAGTAGGTACAGCGTGCGTGGTAGACTAGAA
GAAATACGGAGAGAAATAGGGGAAATATGGAAACGTATGCATAAAACGTC
TAAAGTAAAGAAGCTTAGAAACGCTGCACACTTTCAATTGTTGTAACATG
CTCTCGTTGGTGTCATTCATAATTTGAATTATCTTTGTAAGCTCTACCAT
TTTTCTGCCATACACGGAGTCCGAAATGTACAAGAAGAAAAACCGAAAAA
GTTACAATTCCTAAATTCAATTCCCGAGCTGTATCGATGGCAAATGTGAA
CACGAGCAAGTCGCTTTTTCATGTACGCCTCACTGTGTACTAGACTCCAT
GGCCGATCGTAGATCGTCTTTATTATTGGACATTCATTCCTCTTCTGAAA
CATGTTAAAGAGCGGTGGGACATTTGAAGCTACGATAAATGTGGGCAGTT
CATCTCGTGATTTCCAAAGAAGCGCACTCTCACAATAGATAAAGGGGGGA
CGCAAGGGACATGAAAACCTCTCCTTGGCTTGAATGAATGCTCCACAGAG
TAGACAATGAATTGAATGCTGAACTTGGATTCCACACGAAGCCATCCAAT
GAGAGGCGGAAAATGCGCAAAGACAGTACCTGCTCCTTGGTGACAGACAG
AATGCTTGCCTTTGTCCATCTCTTCAAGAACGTCCTTCAACCTTATTTAC
CGGAACTCTTTTTTGGCCATAGGGGTGCTCTGTTTTTCGAGCCCTCTAAG
ATACACTCCATTACATGCTCACCGACCTTTTTCTTCTGGGGGGTGGGTGG
GTGG

Coding sequence (CDS) from alignment at chr8:1185892..1188995+

>NO08G04130.1 ID=NO08G04130.1|Name=NO08G04130.1|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at chr8:1185892..1188995+ (Nannochloropsis oceanica)
ATGGACAGTGCGGCTGGTCGAATTGCCATTCTCATTCCTGTGCTAGGTGT
GGCCATCTGTGCGGGTATGGCTGCCTTTGGATTCAAGGGGAGGGTCAATG
TCGTTGGAGTCGACCTCGGCACGACCTTCTCTGTTGTAGCCGTCAACGAG
CACGGCACCGTCCGAGTCATCAAAGATAAATATGGTGATCCTCTCGTGCC
TTCCATCGTGTCGTTTGCGCCGGGCGGAAACGTGTTGGTGGGGAAAGAGG
CGAGGAGACGGCTTGCTCTCGATCCAACACACACCATTTACGACGCCAAG
CGGTTCATTGGTCGAGATTTCGACGATCCTACCGTACGTATGGAGCTGGA
GCGTCACCCCTTCTCGGTGATTAAGCACGAAGGCAACTATTCGGGTGTTG
GCTTTGCTATGAATGACGAGACTGTAACGCCTGAGGAAGTGGGGGCACAC
GTGCTTCGGCGATTGCTGGATATGACTGCTGACTATCTCGGCCATCGACA
GGTGACCAAGGCCGTGATTGCAGTTCCCGCCAAATTCAACTCGCGTCAAA
AACGCGCCACTGGTGAGGCATACATGCGCGCGGGGCTCAAGGTAATGCGC
GTCTTGGAAGAGCCAACAGCTGCTGCGATCGCATACGGGCTGCATCAAAA
ACCCAATGTCCACCACATTCTGGTCTATGACTTTGGGGGGGGCACACTTG
ACGTATCGCTCTTATATGTGCACGAGGGCTTTGTGACGGTGGAGGGCATT
GATGGCGATGATCACTTGGGGGGTGCGGACTTCGATCATTGCCTTTCCCA
CCATCTAGTAGCTACCTACGGCGATGTCACATCCTCTATACCCTCGTCTT
CTTCCCTGTACGACCTTGAAGCAGGGCTAGGTGAAGGAAAGGAAGCATTG
TTCTTCGATGACGATGGAGACATACCTTCCTCTAACTCCACTCGTTCCTC
CTCTCCTCATGCCCTCCATGACTGTGCATCCTACACCATGCTCTCCATCG
CTGAGCACTTGAAGAAGCGCCTCTCTTCTTCTCCCTCTGCCTCTTTTTCT
TGCCTGTCCAACAAGAAGGACGGTGGTCTATCAAAGAACATCACAGTAAC
CCGGCAAGCCTTCGAGAAGGCGTGCGCTGACGTATTTGCGAGGGCCCTTG
CTCCGGTAGATTTGTGTTTGGAAAGCAATGGAATGGCGACGAGTGAAATC
GATGAGGTCGTCATGGTGGGGGGTACCACACGAATACCCAAAGTGAGAGA
GATGCTGCGAGTGCACCTCCAAGTGGCAAGTTTGAACACACACATTGACC
CGGACATAACGGTGGCAGTAGGTACAGCGTGCGTGGTAGACTAG

Synonyms

Publications