NO08G04080.4, NO08G04080.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04080.4
Unique NameNO08G04080.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1661
Alignment locationchr8:1164736..1166566 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1164736..1166566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04080.4 vs.
Match: XP_005854599.1 (hypothetical protein NGA_0195600 [Nannochloropsis gaditana CCMP526]; EKU21765.1 hypothetical protein NGA_0195600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 101.3 bits (251), Expect = 5.700e-18
Identity = 85/227 (37.44%), Postives = 122/227 (53.74%), Query Frame = 0 
Query:   44 PTESHALAPPTASSSSLSSSSPASGRPLPPPRSTPPPLKVQDLGRLLKEQELRALAKLEAAAQALLESETEVDALGIRRPLDRHISFMPSSSTADRRKAVHAAEEEMEKQGRPCSKGG-ETHERETITNIAA--MNEVDEYVSPAVDRQLLQQAYQTRRARVEELSQFRSRRGKQRRDASRNGGKLYQPPLKPPTAKTVPTTLLLLLRIKFPDGAILTARFYEGEHV 268
            PT S + +  +  SSS S ++ A   P PPP S P     ++LGR+L+E++ RALA+   A +   + ETE+DA GIRRP DR +SF P+ +      + H  E       RP  KG  +T  R  I  +A   M   +E    A+DR +L++AY+ RRA+VE LS+F+S+R +  R + +                    T  + +R+KFPDGA LTARF EGE V
Sbjct:   40 PTLSVSCSASSPPSSSSSPTNSAQSSPFPPP-SLPRVRGPRELGRMLEEEKTRALAQEREADERRFQFETEMDAEGIRRPRDRKLSFTPAPAFLS---SSHVRE-------RPGGKGSADTKARMNIEPMATGGMAAAEEEGELAIDRHMLRKAYEVRRAQVESLSRFQSKRKRHGRQSGQT------------------RTSFVRVRVKFPDGAALTARFCEGEKV 237
The following BLAST results are available for this feature:
BLAST of NO08G04080.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854599.15.700e-1837.44hypothetical protein NGA_0195600 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04080NO08G04080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04080.4NO08G04080.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04080.4.cds1NO08G04080.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04080.4.cds2NO08G04080.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04080.4 ID=NO08G04080.4|Name=NO08G04080.4|organism=Nannochloropsis oceanica|type=mRNA|length=1661bp
TTCCGCAAAGACCAAGCATTCGCAAACCCTCCCATGTTGTCTCACAAGGT
CACTACTCACGTGTCTCCTCCTTTTGCACCCTCTCCTTATCACAGACATG
CTTGTGGCGGGCGGAAGAAGCCAAATGTGCCGCTGCCCGTTCGCCTCCCG
TCTTTCCGAGTCCTTTCCCCTCCCCTTCCTCGTCGGAGTAGGCCTCGTGC
TCCTCGTCCTCGTCCTCTCCCCTTTGCCGACCGAAAGCCATGCGCTGGCA
CCTCCAACTGCCTCTTCATCGTCCTTATCATCGTCTTCTCCAGCTTCCGG
ACGTCCCCTCCCTCCTCCTCGCTCAACCCCCCCCCCATTAAAAGTCCAAG
ACCTCGGCCGACTATTGAAGGAGCAAGAACTTCGAGCACTTGCCAAGCTA
GAAGCCGCTGCCCAAGCCCTTCTGGAAAGCGAGACGGAGGTAGATGCTCT
CGGCATCCGTCGTCCACTCGACCGGCATATTTCATTCATGCCCTCGTCGT
CTACTGCAGACAGACGGAAGGCAGTACATGCAGCAGAGGAGGAAATGGAA
AAGCAGGGCCGACCGTGTTCTAAAGGAGGAGAAACCCACGAGAGGGAGAC
GATCACAAATATAGCAGCAATGAATGAAGTCGACGAGTACGTAAGTCCGG
CGGTGGACAGGCAATTGCTGCAACAGGCGTACCAGACACGAAGGGCACGT
GTGGAGGAGCTTTCGCAGTTTCGATCGCGGCGGGGGAAGCAGAGGCGTGA
CGCCAGCAGGAATGGCGGAAAGCTCTATCAGCCCCCGCTTAAACCACCGA
CAGCGAAAACAGTACCGACCACCCTGCTGCTACTCCTGCGGATTAAGTTC
CCGGACGGCGCCATCTTGACGGCCCGCTTTTACGAGGGGGAGCACGTGGC
GGTGCGTGGGGTTGGGGATGGGAGGTGGGAAGAAAGGATAACAGAGGGGA
AGGAGGAGGAAGAGGAGGCGAAAGAGAACGAAGAGGGAGGAGGGAGAGAA
GGGAAAAAAAAAGGTAGAGATGATCACGTCATCGTGAAGAATCTCGGTTT
GTAGTTTCTCCTGCTACTGCATTTTCATACATCCCTGTTTTCTTATCCGT
ACTTTTTTTTTATCTTTCCCCTTTTCCCAATTCTAAAGGACGTTTTTACC
CTCCTTCGCACCGCCCTCTCCCTTGCACCTCTCCCTCCGCAATTCGTCCT
CCTCAATCTAGGGGGAATGGGGCCTCGACGTCTGTCGGCAGGGGAGGGGA
AGTCGACAATAATGAACATGACGCTCAAGGCCTGCGGGCTCACGGCGCCC
GCGGCGACGCTGTTGTTGCAATGGCAAAGGGAAAGTAGGGCTGCTGTACC
CAAGGTAAGAGGGAGGCAAAAAGAGGGTGGAAGAGAAGGAGGAGGAGGGC
TGTGGAGTTCAGGAAAGTATCGGCTGGGAGGATCAGGATACGAGACAAGA
ACGAGACATGAAAGCGGCGGGAGACGCGAAAATAAAGCCACTGCAGAAAT
ATGGTCACGTCTCTTTTTCCACTTCTTTACAGGATACGATCGAGTGGATT
GACCCAGCCCTGCTGCACGCCTCCGGGAGAGATAAATAGGCGAAGGGGAT
GCAAGAGACAGGAAGGAACTGATACCACTTTGTAGAAAGAAATATTGAAC
ATACCGATGAT
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protein sequence of NO08G04080.4

>NO08G04080.4-protein ID=NO08G04080.4-protein|Name=NO08G04080.4|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MLVAGGRSQMCRCPFASRLSESFPLPFLVGVGLVLLVLVLSPLPTESHAL
APPTASSSSLSSSSPASGRPLPPPRSTPPPLKVQDLGRLLKEQELRALAK
LEAAAQALLESETEVDALGIRRPLDRHISFMPSSSTADRRKAVHAAEEEM
EKQGRPCSKGGETHERETITNIAAMNEVDEYVSPAVDRQLLQQAYQTRRA
RVEELSQFRSRRGKQRRDASRNGGKLYQPPLKPPTAKTVPTTLLLLLRIK
FPDGAILTARFYEGEHVAVRGVGDGRWEERITEGKEEEEEAKENEEGGGR
EGKKKGRDDHVIVKNLGL*
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mRNA from alignment at chr8:1164736..1166566-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04080.4 ID=NO08G04080.4|Name=NO08G04080.4|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp|location=Sequence derived from alignment at chr8:1164736..1166566- (Nannochloropsis oceanica)
TTCCGCAAAGACCAAGCATTCGCAAACCCTCCCATGTTGTCTCACAAGGT
CACTACTCACGTGTCTCCTCCTTTTGCACCCTCTCCTTATCACAGACATG
CTTGTGGCGGGCGGAAGAAGCCAAATGTGCCGCTGCCCGTTCGCCTCCCG
TCTTTCCGAGTCCTTTCCCCTCCCCTTCCTCGTCGGAGTAGGCCTCGTGC
TCCTCGTCCTCGTCCTCTCCCCTTTGCCGACCGAAAGCCATGCGCTGGCA
CCTCCAACTGCCTCTTCATCGTCCTTATCATCGTCTTCTCCAGCTTCCGG
ACGTCCCCTCCCTCCTCCTCGCTCAACCCCCCCCCCATTAAAAGTCCAAG
ACCTCGGCCGACTATTGAAGGAGCAAGAACTTCGAGCACTTGCCAAGCTA
GAAGCCGCTGCCCAAGCCCTTCTGGAAAGCGAGACGGAGGTAGATGCTCT
CGGCATCCGTCGTCCACTCGACCGGCATATTTCATTCATGCCCTCGTCGT
CTACTGCAGACAGACGGAAGGCAGTACATGCAGCAGAGGAGGAAATGGAA
AAGCAGGGCCGACCGTGTTCTAAAGGAGGAGAAACCCACGAGAGGGAGAC
GATCACAAATATAGCAGCAATGAATGAAGTCGACGAGTACGTAAGTCCGG
CGGTGGACAGGCAATTGCTGCAACAGGCGTACCAGACACGAAGGGCACGT
GTGGAGGAGCTTTCGCAGTTTCGATCGCGGCGGGGGAAGCAGAGGCGTGA
CGCCAGCAGGAATGGCGGAAAGGTAATTGAAATCCATGACAAAAGGAAAG
CGATAGACAGGTAGAAGGAGTGAATGGTGGCTTGGAGGGATGTGACTACA
TTTCCGATGGGGGCAACTTTACGATTTTTATCCTCTTGACGTTCTCGCCA
AGCCTCAAGCATATCCTCTCTCCCTCTCCTTTCCACCTATAGCTCTATCA
GCCCCCGCTTAAACCACCGACAGCGAAAACAGTACCGACCACCCTGCTGC
TACTCCTGCGGATTAAGTTCCCGGACGGCGCCATCTTGACGGCCCGCTTT
TACGAGGGGGAGCACGTGGCGGTGCGTGGGGTTGGGGATGGGAGGTGGGA
AGAAAGGATAACAGAGGGGAAGGAGGAGGAAGAGGAGGCGAAAGAGAACG
AAGAGGGAGGAGGGAGAGAAGGGAAAAAAAAAGGTAGAGATGATCACGTC
ATCGTGAAGAATCTCGGTTTGTAGTTTCTCCTGCTACTGCATTTTCATAC
ATCCCTGTTTTCTTATCCGTACTTTTTTTTTATCTTTCCCCTTTTCCCAA
TTCTAAAGGACGTTTTTACCCTCCTTCGCACCGCCCTCTCCCTTGCACCT
CTCCCTCCGCAATTCGTCCTCCTCAATCTAGGGGGAATGGGGCCTCGACG
TCTGTCGGCAGGGGAGGGGAAGTCGACAATAATGAACATGACGCTCAAGG
CCTGCGGGCTCACGGCGCCCGCGGCGACGCTGTTGTTGCAATGGCAAAGG
GAAAGTAGGGCTGCTGTACCCAAGGTAAGAGGGAGGCAAAAAGAGGGTGG
AAGAGAAGGAGGAGGAGGGCTGTGGAGTTCAGGAAAGTATCGGCTGGGAG
GATCAGGATACGAGACAAGAACGAGACATGAAAGCGGCGGGAGACGCGAA
AATAAAGCCACTGCAGAAATATGGTCACGTCTCTTTTTCCACTTCTTTAC
AGGATACGATCGAGTGGATTGACCCAGCCCTGCTGCACGCCTCCGGGAGA
GATAAATAGGCGAAGGGGATGCAAGAGACAGGAAGGAACTGATACCACTT
TGTAGAAAGAAATATTGAACATACCGATGAT
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Coding sequence (CDS) from alignment at chr8:1164736..1166566-

>NO08G04080.4 ID=NO08G04080.4|Name=NO08G04080.4|organism=Nannochloropsis oceanica|type=CDS|length=957bp|location=Sequence derived from alignment at chr8:1164736..1166566- (Nannochloropsis oceanica)
ATGCTTGTGGCGGGCGGAAGAAGCCAAATGTGCCGCTGCCCGTTCGCCTC
CCGTCTTTCCGAGTCCTTTCCCCTCCCCTTCCTCGTCGGAGTAGGCCTCG
TGCTCCTCGTCCTCGTCCTCTCCCCTTTGCCGACCGAAAGCCATGCGCTG
GCACCTCCAACTGCCTCTTCATCGTCCTTATCATCGTCTTCTCCAGCTTC
CGGACGTCCCCTCCCTCCTCCTCGCTCAACCCCCCCCCCATTAAAAGTCC
AAGACCTCGGCCGACTATTGAAGGAGCAAGAACTTCGAGCACTTGCCAAG
CTAGAAGCCGCTGCCCAAGCCCTTCTGGAAAGCGAGACGGAGGTAGATGC
TCTCGGCATCCGTCGTCCACTCGACCGGCATATTTCATTCATGCCCTCGT
CGTCTACTGCAGACAGACGGAAGGCAGTACATGCAGCAGAGGAGGAAATG
GAAAAGCAGGGCCGACCGTGTTCTAAAGGAGGAGAAACCCACGAGAGGGA
GACGATCACAAATATAGCAGCAATGAATGAAGTCGACGAGTACGTAAGTC
CGGCGGTGGACAGGCAATTGCTGCAACAGGCGTACCAGACACGAAGGGCA
CGTGTGGAGGAGCTTTCGCAGTTTCGATCGCGGCGGGGGAAGCAGAGGCG
TGACGCCAGCAGGAATGGCGGAAAGCTCTATCAGCCCCCGCTTAAACCAC
CGACAGCGAAAACAGTACCGACCACCCTGCTGCTACTCCTGCGGATTAAG
TTCCCGGACGGCGCCATCTTGACGGCCCGCTTTTACGAGGGGGAGCACGT
GGCGGTGCGTGGGGTTGGGGATGGGAGGTGGGAAGAAAGGATAACAGAGG
GGAAGGAGGAGGAAGAGGAGGCGAAAGAGAACGAAGAGGGAGGAGGGAGA
GAAGGGAAAAAAAAAGGTAGAGATGATCACGTCATCGTGAAGAATCTCGG
TTTGTAG
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Synonyms
Publications