NO08G03650.1, NO08G03650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03650.1
Unique NameNO08G03650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1976
Alignment locationchr8:1020167..1022672 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1020167..1022672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03650.1 vs.
Match: EWM26814.1 (glutamyl endopeptidase family protein [Nannochloropsis gaditana])

HSP 1 Score: 577.8 bits (1488), Expect = 2.700e-161
Identity = 288/400 (72.00%), Postives = 331/400 (82.75%), Query Frame = 0 
Query:   10 GLSLFWAMGAAVLGAPTVWAQRGPLEDGLGARFQSVGYEINPNSIFGKMSTMSADMKPAAGGRPKFFNVSVDQANYVSLRAFLGTLPVSGGKLSDLIRDEDDGDLPSVEAYLDTLS-KGIRDNLAQGLRG---KRAAAVEVGAEGGQKQGSGNQPPSHPYQRKLNVYAKDQRSNFDWDVYPDRVVGKLMFPASYYCTGQLIGKRYVLTAAHCFYSYGSQIDGNNMYQSQFRAAYHTNKAGQHFYAASSTWGRLWYGTTYPEVYRNSDWAIIELEEPLGETQGYVGINPTDLSKKLPMYNKFQLIGYSEDGYSQTAGKDPQCSLEDAYQGVYFHNCDCAAGASGGALLDGSYNVVGINTAHIMPSNTQLLRSTEYNPTYPNIAVPAYQFMPTYAHILMQID 406
            G   F A+  A+L    +  Q GP   G GARFQSVG EINP+S + KMS+ S  ++     + + FNVSVDQ NY+SLRAFLGTLP+ GGKL DL+RDEDD DLPSVE +L+ L+ K +++NL +GLRG   + AAAV+VG EG Q+    +      +QR+LNVYAKDQR+ FD DVYPDR  GKLMFPASYYCTGQLIGKRYVLTAAHCFYSYG+ IDG+N+Y S+FR AYHT+K G+H+YAASS WGRLWYGTTYPEVYRNSDWAIIELE PLGETQGYVGINPTDLS++LPMYNKF LIGYSEDGYSQTAG DP+CSLEDAYQGVYFHNCDCAAGASGGALLD S+NVVGINTAH+MPSNT+LLR+++YNPTYPNIAVPAYQFMPTYAHIL QID
Sbjct:   11 GFLFFLAVNWALLSVLVLGTQTGP-SGGWGARFQSVGCEINPHSKYNKMSSSSGSLRE----KSRMFNVSVDQGNYISLRAFLGTLPI-GGKLQDLVRDEDDADLPSVEKFLEGLTLKSLKENLGKGLRGGTDRVAAAVDVGVEGEQQ----SIDTRDVHQRRLNVYAKDQRTYFDPDVYPDRTFGKLMFPASYYCTGQLIGKRYVLTAAHCFYSYGTSIDGDNIYHSKFRVAYHTDKEGKHYYAASSAWGRLWYGTTYPEVYRNSDWAIIELETPLGETQGYVGINPTDLSRQLPMYNKFSLIGYSEDGYSQTAGIDPKCSLEDAYQGVYFHNCDCAAGASGGALLDASFNVVGINTAHVMPSNTKLLRASDYNPTYPNIAVPAYQFMPTYAHILTQID 400
The following BLAST results are available for this feature:
BLAST of NO08G03650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26814.12.700e-16172.00glutamyl endopeptidase family protein [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03650NO08G03650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03650.1NO08G03650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03650.1.cds1NO08G03650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03650.1.cds2NO08G03650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03650.1.cds3NO08G03650.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03650.1 ID=NO08G03650.1|Name=NO08G03650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1976bp
GCGATCCCAAGAGGCCTGGCCCACCGAGAGTCACTGCTCAATTTAGTCGG
GATCTGCATCTAGCGCCTCTTTCCTCTCTTCTCTTTCGGTACCATGAATA
TATCTTGGACCAGCCGCTGCGGGCTGTCCCTCTTTTGGGCCATGGGGGCC
GCAGTGTTGGGTGCGCCGACCGTCTGGGCACAGAGAGGGCCCTTGGAGGA
CGGGTTGGGGGCCCGATTTCAGAGCGTGGGTTATGAAATCAATCCGAACT
CTATTTTTGGCAAGATGAGCACGATGAGTGCTGACATGAAGCCGGCTGCG
GGGGGACGACCCAAGTTTTTCAATGTCTCGGTTGACCAAGCCAACTACGT
GAGCCTTCGGGCCTTTCTCGGCACGCTTCCTGTGAGCGGAGGCAAGCTTT
CAGACCTCATTCGGGATGAAGACGACGGCGACCTCCCCTCCGTCGAGGCG
TACCTGGATACTCTCAGTAAAGGGATCAGGGACAATCTCGCACAAGGCTT
GCGTGGCAAAAGGGCAGCAGCGGTAGAGGTGGGGGCGGAGGGCGGGCAGA
AACAGGGAAGTGGCAATCAGCCTCCGTCTCACCCGTATCAACGCAAGTTA
AATGTATACGCGAAGGACCAACGGAGTAATTTTGATTGGGACGTATATCC
GGATCGTGTGGTTGGAAAACTGATGTTTCCTGCCTCGTATTACTGCACGG
GACAGCTGATCGGGAAGCGGTATGTCCTCACGGCCGCTCACTGTTTCTAC
TCGTATGGCAGCCAAATCGACGGCAACAACATGTATCAATCCCAGTTCCG
TGCGGCTTACCACACCAACAAAGCCGGGCAGCACTTTTACGCGGCCTCCT
CCACATGGGGTCGGTTGTGGTACGGCACAACCTACCCGGAAGTCTACCGC
AACAGTGACTGGGCCATCATCGAGTTGGAAGAGCCGTTGGGCGAGACGCA
AGGGTACGTGGGAATCAATCCCACGGACTTATCGAAGAAGCTGCCTATGT
ATAATAAATTCCAATTGATTGGCTATTCCGAGGACGGATACAGTCAGACC
GCCGGGAAGGACCCGCAGTGCTCGTTGGAAGATGCTTACCAGGGGGTGTA
TTTCCACAATTGCGACTGTGCTGCTGGGGCAAGTGGAGGTGCGCTTCTCG
ATGGTAGCTATAATGTCGTGGGGATCAATACAGCGCACATCATGCCATCT
AACACCCAGTTGTTGAGGTCCACCGAGTACAATCCCACGTACCCTAACAT
TGCGGTACCTGCATATCAGTTCATGCCGACATATGCACACATCTTGATGC
AGATAGATACGGTCTAACGGGAGGACGGGCGGGACAGAGGGAACTTAGGA
GGAGAGGAAAGGAAAGGAGGGGAAGGGATGGCCATGAATCTAACTATCTG
TACTCTAAATATTGTTTATATTATTTCATATTGGTGTCCGTGTATAAGTT
AATGCAAACGTTTGCATATGATTAAACGTCCAAAGTCGGTCCGAAGGAGA
GGTGGGGGAGGGGGAGGGGGAGGAAGACTTGTGCTGAATCGGTTACTCGT
ATGCAATGGATGCATACGAGTTAGGTGAAAGCGATAAAAGGAGTGGACGT
GGAAAGGGGGGTGCAAATTGAAACGGGTAAATGGAGTAGCGATTTTCGGG
AGGGAGTGGATTAAGAAGGGAGGATCAAAAAGAATGTGCAAAATGGAAGG
TACTTTATCCTACATAGGTACAACCAAGAACGTACGAACAGAAGGCCACT
AGGGTCAGAAACGATGTATATTTAGCGCTCCTTAAGAAAGTACACTGGCG
GAGGGAGACTGAGACAAGAAAAGCAACGCTGTAATCAAACAGATGGAGGC
GAGTGAGAAAGTCAATTGTGATACGCAGACCGATCGACTCAGTCGTGAAC
CCGTATTTCGGGTTCGGTCTCTATGAATGTCACAAAGAAAGGGATGAAAA
CAGAAAGAAAGAATGGACATACCCCA
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protein sequence of NO08G03650.1

>NO08G03650.1-protein ID=NO08G03650.1-protein|Name=NO08G03650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MNISWTSRCGLSLFWAMGAAVLGAPTVWAQRGPLEDGLGARFQSVGYEIN
PNSIFGKMSTMSADMKPAAGGRPKFFNVSVDQANYVSLRAFLGTLPVSGG
KLSDLIRDEDDGDLPSVEAYLDTLSKGIRDNLAQGLRGKRAAAVEVGAEG
GQKQGSGNQPPSHPYQRKLNVYAKDQRSNFDWDVYPDRVVGKLMFPASYY
CTGQLIGKRYVLTAAHCFYSYGSQIDGNNMYQSQFRAAYHTNKAGQHFYA
ASSTWGRLWYGTTYPEVYRNSDWAIIELEEPLGETQGYVGINPTDLSKKL
PMYNKFQLIGYSEDGYSQTAGKDPQCSLEDAYQGVYFHNCDCAAGASGGA
LLDGSYNVVGINTAHIMPSNTQLLRSTEYNPTYPNIAVPAYQFMPTYAHI
LMQIDTV*
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mRNA from alignment at chr8:1020167..1022672+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03650.1 ID=NO08G03650.1|Name=NO08G03650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2506bp|location=Sequence derived from alignment at chr8:1020167..1022672+ (Nannochloropsis oceanica)
GCGATCCCAAGAGGCCTGGCCCACCGAGAGTCACTGCTCAATTTAGTCGG
GATCTGCATCTAGCGCCTCTTTCCTCTCTTCTCTTTCGGTACCATGAATA
TATCTTGGACCAGCCGCTGCGGGCTGTCCCTCTTTTGGGCCATGGGGGCC
GCAGTGTTGGGTGCGCCGACCGTCTGGGCACAGAGAGGGCCCTTGGAGGA
CGGGTTGGGGGCCCGATTTCAGAGCGTGGGTTATGAAATCAATCCGAACT
CTATTTTTGGCAAGATGAGCACGATGAGTGCTGACATGAAGCCGGCTGCG
GGGGGACGACCCAAGTTGTAAGTGTATGGGGTAGAAGTGAGGAGGACAGG
GGTAGGCGGGAGTGTATGTGTGGAAATGCTGGTTGCAGCCACAGTATTTC
TCCATCAGCGGCCATTGTTTTCCTCCATCGGCATCTCAAAGCTGTTACAG
GCGCTGTTTATACACAATCGGTCGCCCGGTATGGCTGGGACCTCTCCTGC
TCCTGTGGCAGGCACTACTGAGGGACTCGCCTATGTACCTCCCCCGACCT
CTCTCACCCCTCTCACCGGTGTCTTCTGTACTTCCTTACCTCATGACTAC
AGTTTCAATGTCTCGGTTGACCAAGCCAACTACGTGAGCCTTCGGGCCTT
TCTCGGCACGCTTCCTGTGAGCGGAGGCAAGCTTTCAGACCTCATTCGGG
ATGAAGACGACGGCGACCTCCCCTCCGTCGAGGCGTACCTGGATACTCTC
AGTAAAGGGATCAGGGACAATCTCGCACAAGGCTTGCGTGGCAAAAGGGC
AGCAGCGGTAGAGGTGGGGGCGGAGGGCGGGCAGAAACAGGGAAGTGGCA
ATCAGCCTCCGTCTCACCCGTATCAACGCAAGTTAAATGTATACGCGAAG
GACCAACGGAGTAATTTTGATTGGGACGTATATCCGGATCGTGTGGTTGG
AAAACTGATGTTTCCTGCCTCGTATTACTGCACGGGACAGCTGATCGGGA
AGCGGTTAGTTGCTGGTGGTATTTTGGTCTGCGGTTTCTTCTTCCTCCCT
CCCACCCTCCCTCCCACCCTCCCTCAGTCCCTCAATTCCTAGGTGGGCCC
TTCCCTTCCCAGCTGCTGAGGTCTTTGATCTATTATCAGCACATTTGTGT
AGCAGAGCCATGCAAAAGTCCTCTTACCATCACTTCTTCCTATCCCTCTC
CCTCCTCCCTTCCTCCCCCCTCCCTCCCTCCCTCCTTTCCTACGCTCAGG
TATGTCCTCACGGCCGCTCACTGTTTCTACTCGTATGGCAGCCAAATCGA
CGGCAACAACATGTATCAATCCCAGTTCCGTGCGGCTTACCACACCAACA
AAGCCGGGCAGCACTTTTACGCGGCCTCCTCCACATGGGGTCGGTTGTGG
TACGGCACAACCTACCCGGAAGTCTACCGCAACAGTGACTGGGCCATCAT
CGAGTTGGAAGAGCCGTTGGGCGAGACGCAAGGGTACGTGGGAATCAATC
CCACGGACTTATCGAAGAAGCTGCCTATGTATAATAAATTCCAATTGATT
GGCTATTCCGAGGACGGATACAGTCAGACCGCCGGGAAGGACCCGCAGTG
CTCGTTGGAAGATGCTTACCAGGGGGTGTATTTCCACAATTGCGACTGTG
CTGCTGGGGCAAGTGGAGGTGCGCTTCTCGATGGTAGCTATAATGTCGTG
GGGATCAATACAGCGCACATCATGCCATCTAACACCCAGTTGTTGAGGTC
CACCGAGTACAATCCCACGTACCCTAACATTGCGGTACCTGCATATCAGT
TCATGCCGACATATGCACACATCTTGATGCAGATAGATACGGTCTAACGG
GAGGACGGGCGGGACAGAGGGAACTTAGGAGGAGAGGAAAGGAAAGGAGG
GGAAGGGATGGCCATGAATCTAACTATCTGTACTCTAAATATTGTTTATA
TTATTTCATATTGGTGTCCGTGTATAAGTTAATGCAAACGTTTGCATATG
ATTAAACGTCCAAAGTCGGTCCGAAGGAGAGGTGGGGGAGGGGGAGGGGG
AGGAAGACTTGTGCTGAATCGGTTACTCGTATGCAATGGATGCATACGAG
TTAGGTGAAAGCGATAAAAGGAGTGGACGTGGAAAGGGGGGTGCAAATTG
AAACGGGTAAATGGAGTAGCGATTTTCGGGAGGGAGTGGATTAAGAAGGG
AGGATCAAAAAGAATGTGCAAAATGGAAGGTACTTTATCCTACATAGGTA
CAACCAAGAACGTACGAACAGAAGGCCACTAGGGTCAGAAACGATGTATA
TTTAGCGCTCCTTAAGAAAGTACACTGGCGGAGGGAGACTGAGACAAGAA
AAGCAACGCTGTAATCAAACAGATGGAGGCGAGTGAGAAAGTCAATTGTG
ATACGCAGACCGATCGACTCAGTCGTGAACCCGTATTTCGGGTTCGGTCT
CTATGAATGTCACAAAGAAAGGGATGAAAACAGAAAGAAAGAATGGACAT
ACCCCA
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Coding sequence (CDS) from alignment at chr8:1020167..1022672+

>NO08G03650.1 ID=NO08G03650.1|Name=NO08G03650.1|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at chr8:1020167..1022672+ (Nannochloropsis oceanica)
ATGAATATATCTTGGACCAGCCGCTGCGGGCTGTCCCTCTTTTGGGCCAT
GGGGGCCGCAGTGTTGGGTGCGCCGACCGTCTGGGCACAGAGAGGGCCCT
TGGAGGACGGGTTGGGGGCCCGATTTCAGAGCGTGGGTTATGAAATCAAT
CCGAACTCTATTTTTGGCAAGATGAGCACGATGAGTGCTGACATGAAGCC
GGCTGCGGGGGGACGACCCAAGTTTTTCAATGTCTCGGTTGACCAAGCCA
ACTACGTGAGCCTTCGGGCCTTTCTCGGCACGCTTCCTGTGAGCGGAGGC
AAGCTTTCAGACCTCATTCGGGATGAAGACGACGGCGACCTCCCCTCCGT
CGAGGCGTACCTGGATACTCTCAGTAAAGGGATCAGGGACAATCTCGCAC
AAGGCTTGCGTGGCAAAAGGGCAGCAGCGGTAGAGGTGGGGGCGGAGGGC
GGGCAGAAACAGGGAAGTGGCAATCAGCCTCCGTCTCACCCGTATCAACG
CAAGTTAAATGTATACGCGAAGGACCAACGGAGTAATTTTGATTGGGACG
TATATCCGGATCGTGTGGTTGGAAAACTGATGTTTCCTGCCTCGTATTAC
TGCACGGGACAGCTGATCGGGAAGCGGTATGTCCTCACGGCCGCTCACTG
TTTCTACTCGTATGGCAGCCAAATCGACGGCAACAACATGTATCAATCCC
AGTTCCGTGCGGCTTACCACACCAACAAAGCCGGGCAGCACTTTTACGCG
GCCTCCTCCACATGGGGTCGGTTGTGGTACGGCACAACCTACCCGGAAGT
CTACCGCAACAGTGACTGGGCCATCATCGAGTTGGAAGAGCCGTTGGGCG
AGACGCAAGGGTACGTGGGAATCAATCCCACGGACTTATCGAAGAAGCTG
CCTATGTATAATAAATTCCAATTGATTGGCTATTCCGAGGACGGATACAG
TCAGACCGCCGGGAAGGACCCGCAGTGCTCGTTGGAAGATGCTTACCAGG
GGGTGTATTTCCACAATTGCGACTGTGCTGCTGGGGCAAGTGGAGGTGCG
CTTCTCGATGGTAGCTATAATGTCGTGGGGATCAATACAGCGCACATCAT
GCCATCTAACACCCAGTTGTTGAGGTCCACCGAGTACAATCCCACGTACC
CTAACATTGCGGTACCTGCATATCAGTTCATGCCGACATATGCACACATC
TTGATGCAGATAGATACGGTCTAA
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Synonyms
Publications