NO08G03430.2, NO08G03430.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03430.2
Unique NameNO08G03430.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1388
Alignment locationchr8:954170..956160 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:954170..956160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03430.2 vs.
Match: EWM26818.1 (ribosomal RNA large subunit methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 282.3 bits (721), Expect = 2.000e-72
Identity = 168/304 (55.26%), Postives = 204/304 (67.11%), Query Frame = 0 
Query:   33 PAAATGSVMCVHQWIQRHINDPYVKASRKQELRSRAAFKLKEMQDKHRILRRGDCVIDLGCAPGGWSEVAAQIVLVRATPQAIPPSFTSNGGGSTTKAVAWGGAKAAPFRPPLAAPASPPRGLVIGIDKRPMLPLPGVFFLHGDFTDETTLASLRVAL-RNGEMEEEEEEKGGGGGGGGGGGGGRRRRQKRSSRVVDVILSDMAPDLSGDKFRDHRRTLDLGYEVLAFADRAFQERNSSSSSSGAESRKGSNKKTLLIKLFKGRDEEEFLSHARARYNEVRLLKPKASRIESGEQYMMARDFKG 336
            P+   G+++ VHQWI+RH+NDP+VKASRK ELRSRAAFKLKEMQ+K RI+R GDCVIDLGCAPGGWS+V  Q +         PPS +S+  G++   V     +AA   P    P +   G VIGID RPM P+PGV F+ GDF++  T A+LR AL R+   +  + E+G    GGG   G             DVILSDMAPDLSGDKFRDHRRTLDL Y+VLAFAD  F  +    +S+     K   +KT+L KLFKGRDEEE L HAR+RY +VR+LKPKASR ESGEQYM+AR FKG
Sbjct:   33 PSHGVGTIVSVHQWIRRHVNDPFVKASRKLELRSRAAFKLKEMQEKCRIMRPGDCVIDLGCAPGGWSQVVMQAI--------HPPSASSSLSGTSDNHV-----RAANNTPRSLFPPASGEGRVIGIDLRPMAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGECEG-----------TADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNSA---LTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQYMLARGFKG 309
The following BLAST results are available for this feature:
BLAST of NO08G03430.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26818.12.000e-7255.26ribosomal RNA large subunit methyltransferase [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03430NO08G03430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03430.2NO08G03430.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03430.2.cds1NO08G03430.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03430.2.cds2NO08G03430.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03430.2.cds3NO08G03430.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03430.2.cds4NO08G03430.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03430.2 ID=NO08G03430.2|Name=NO08G03430.2|organism=Nannochloropsis oceanica|type=mRNA|length=1388bp
CCCCCCCCCTCTCGATTCCTTTTTATTGTTGGGTGAATATTTTATCATTT
GGTGGTTCATAATTCTCTCGTAACTCTGCTCACCCGCCCATCCGTCCAAG
TATTTTGAGATCTCGCGGGAATGGAAAGAGCATTCGGTGCCAAGAAGAAG
CCGTAATAGTAATACCCGAACTCAAGCTACATCTACTGACCCGACCACAG
CGCCCCGACGCCATGACGAGAAAAGAGCGGTCACATGCCTAGCTCGTTCA
TCCTGCTGCTATCTCATCATGCCCCTCGTCTTCCCACGCATTTCCGCAAC
GGCGGCTCGAACGCGTCGTCGACCTATCCCTACAAGTGCGTTTCCTGTTA
TTCCTCTAGTCCGCCCTGCTGCAGCGACTGGCAGTGTCATGTGCGTACAT
CAATGGATACAGCGGCACATTAACGATCCTTACGTCAAGGCATCCCGCAA
GCAGGAGCTACGATCTCGTGCTGCCTTCAAGCTCAAGGAGATGCAAGACA
AACATCGAATCCTACGCCGAGGCGACTGTGTGATTGACTTGGGCTGCGCT
CCCGGCGGGTGGAGCGAAGTGGCCGCTCAAATTGTCCTTGTCAGAGCCAC
CCCTCAGGCAATTCCACCTTCCTTCACCAGCAACGGTGGTGGGTCGACAA
CAAAAGCAGTAGCGTGGGGAGGAGCAAAAGCGGCGCCCTTCCGCCCACCA
TTAGCAGCACCAGCATCGCCACCAAGAGGTCTCGTCATCGGCATCGACAA
ACGACCAATGCTTCCATTACCCGGCGTTTTTTTTCTACACGGGGATTTTA
CTGATGAAACCACACTGGCCTCGCTTCGAGTGGCTCTTAGAAATGGGGAA
ATGGAAGAGGAAGAAGAGGAAAAAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGACGACGACGACGACAAAAACGAAGCAGTAGGGTTGTGG
ACGTCATCCTCTCAGATATGGCGCCTGACTTATCTGGGGATAAGTTCCGA
GATCATCGGCGAACGCTGGATTTGGGTTATGAGGTGCTGGCCTTTGCTGA
CCGAGCCTTCCAAGAAAGAAACAGCAGCAGCTCCAGCAGTGGCGCTGAAA
GCAGGAAAGGCAGCAATAAAAAGACTCTTCTCATCAAGCTGTTTAAAGGA
CGAGATGAGGAGGAGTTTCTATCGCACGCCCGGGCCCGTTACAACGAGGT
CCGATTGCTCAAGCCCAAGGCATCGCGAATCGAAAGTGGGGAGCAGTATA
TGATGGCTCGCGATTTCAAGGGTTTGTGCGGTTGTGGCAATGTGAGCGAT
GGAGCGGTGTAGGAGGGTAGGACGGAATGAGGAGGGTGAAATAAGAGGAG
GGAGAAAGATATTAAAAGAGGAAACACGTTCGAGGCGC
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protein sequence of NO08G03430.2

>NO08G03430.2-protein ID=NO08G03430.2-protein|Name=NO08G03430.2|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MPLVFPRISATAARTRRRPIPTSAFPVIPLVRPAAATGSVMCVHQWIQRH
INDPYVKASRKQELRSRAAFKLKEMQDKHRILRRGDCVIDLGCAPGGWSE
VAAQIVLVRATPQAIPPSFTSNGGGSTTKAVAWGGAKAAPFRPPLAAPAS
PPRGLVIGIDKRPMLPLPGVFFLHGDFTDETTLASLRVALRNGEMEEEEE
EKGGGGGGGGGGGGGRRRRQKRSSRVVDVILSDMAPDLSGDKFRDHRRTL
DLGYEVLAFADRAFQERNSSSSSSGAESRKGSNKKTLLIKLFKGRDEEEF
LSHARARYNEVRLLKPKASRIESGEQYMMARDFKGLCGCGNVSDGAV*
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mRNA from alignment at chr8:954170..956160+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03430.2 ID=NO08G03430.2|Name=NO08G03430.2|organism=Nannochloropsis oceanica|type=mRNA|length=1991bp|location=Sequence derived from alignment at chr8:954170..956160+ (Nannochloropsis oceanica)
CCCCCCCCCTCTCGATTCCTTTTTATTGTTGGGTGAATATTTTATCATTT
GGTGGTTCATAATTCTCTCGTAACTCTGCTCACCCGCCCATCCGTCCAAG
TATTTTGAGATCTCGCGGGAATGGAAAGAGCATTCGGTGCCAAGAAGAAG
CCGTAATAGTAATACCCGAACTCAAGCTACATCTACTGACCCGACCACAG
CGCCCCGACGCCATGACGAGAAAAGAGCGGTCACATGCCTAGCTCGTTCA
TCCTGCTGCTATCTCATCATGCCCCTCGTCTTCCCACGCATTTCCGCAAC
GGCGGCTCGAACGCGTCGTCGACCTATCCCTACAAGTGCGTTTCCTGTTA
TTCCTCTAGTCCGCCCTGCTGCAGCGACTGGCAGTGTCATGTGCGTACAT
CAATGGATACAGCGGCACATTAACGATCCTTACGTCAAGGCATCCCGCAA
GCAGGAGCTACGATCTCGTGCTGCCTTCAAGCTCAAGGTAATGGGTGTGG
ATGCATGTATGCAAGGGGTGGGACGGGGAAACCACAACGTGCTTGTGTGA
ATCAATATTTCACAAGAGCGCACGAGCAACTGTCGTGCCACACGATCGAT
CCACAGTTATGCATGACCTCAAGTACTCATGTCGCTCAACCACAACTCGT
ACATTCACACATTCCACAAGGAGATGCAAGACAAACATCGAATCCTACGC
CGAGGCGACTGGTGCGTATTTTGATTTGATAGCTGTGTTACCCTTTAATT
GATTCATCTAGAGTACTTAAAGCTGTGCCTGAATGCACAATTTTGTGCGC
TCATTGCTAATAGTTATTTGACACTCATCGCCTTTCCTTCCTTCCCCATT
GCTACATAACAATTGCGCACCCAGTGTGATTGACTTGGGCTGCGCTCCCG
GCGGGTGGAGCGAAGTGGCCGCTCAAATTGTCCTTGTCAGAGCCACCCCT
CAGGCAATTCCACCTTCCTTCACCAGCAACGGTGGTGGGTCGACAACAAA
AGCAGTAGCGTGGGGAGGAGCAAAAGCGGCGCCCTTCCGCCCACCATTAG
CAGCACCAGCATCGCCACCAAGAGGTCTCGTCATCGGCATCGACAAACGA
CCAATGCTTCCATTACCCGGCGTTTTTTTTCTACACGGGGATTTTACTGA
TGAAACCACACTGGCCTCGCTTCGAGTGGCTCTTAGAAATGGGGAAATGG
AAGAGGAAGAAGAGGAAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGACGACGACGACGACAAAAACGAAGCAGTAGGGTTGTGGACGT
CATCCTCTCAGATATGGCGCCTGACTTATCTGGGGATAAGTTCCGAGATC
ATCGGCGAACGCTGGATTTGGGTTATGAGGTGTGATAATTGAAAAGCGGA
AGGTTGGAGGGAGGCAAGGTAGCGGTGTGGAGGAGGACGGAGGGACTCCA
GATGCTGGTGCGGCTGGCATGGTTGTGTAATGCTCGCGGAGCAGTCAATG
AGACTCACCTCCCTCGCTCTAGTGAAATGCTGTCCACAATCAAGACACGT
GCTTGACCTTGTTTCCACAAACCCCACAACCCCTACCCTCAAAATCTCTT
ACTCACGACTCTCTCTCTTTCAAATCACCCTTGTAGGTGCTGGCCTTTGC
TGACCGAGCCTTCCAAGAAAGAAACAGCAGCAGCTCCAGCAGTGGCGCTG
AAAGCAGGAAAGGCAGCAATAAAAAGACTCTTCTCATCAAGCTGTTTAAA
GGACGAGATGAGGAGGAGTTTCTATCGCACGCCCGGGCCCGTTACAACGA
GGTCCGATTGCTCAAGCCCAAGGCATCGCGAATCGAAAGTGGGGAGCAGT
ATATGATGGCTCGCGATTTCAAGGGTTTGTGCGGTTGTGGCAATGTGAGC
GATGGAGCGGTGTAGGAGGGTAGGACGGAATGAGGAGGGTGAAATAAGAG
GAGGGAGAAAGATATTAAAAGAGGAAACACGTTCGAGGCGC
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Coding sequence (CDS) from alignment at chr8:954170..956160+

>NO08G03430.2 ID=NO08G03430.2|Name=NO08G03430.2|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at chr8:954170..956160+ (Nannochloropsis oceanica)
ATGCCCCTCGTCTTCCCACGCATTTCCGCAACGGCGGCTCGAACGCGTCG
TCGACCTATCCCTACAAGTGCGTTTCCTGTTATTCCTCTAGTCCGCCCTG
CTGCAGCGACTGGCAGTGTCATGTGCGTACATCAATGGATACAGCGGCAC
ATTAACGATCCTTACGTCAAGGCATCCCGCAAGCAGGAGCTACGATCTCG
TGCTGCCTTCAAGCTCAAGGAGATGCAAGACAAACATCGAATCCTACGCC
GAGGCGACTGTGTGATTGACTTGGGCTGCGCTCCCGGCGGGTGGAGCGAA
GTGGCCGCTCAAATTGTCCTTGTCAGAGCCACCCCTCAGGCAATTCCACC
TTCCTTCACCAGCAACGGTGGTGGGTCGACAACAAAAGCAGTAGCGTGGG
GAGGAGCAAAAGCGGCGCCCTTCCGCCCACCATTAGCAGCACCAGCATCG
CCACCAAGAGGTCTCGTCATCGGCATCGACAAACGACCAATGCTTCCATT
ACCCGGCGTTTTTTTTCTACACGGGGATTTTACTGATGAAACCACACTGG
CCTCGCTTCGAGTGGCTCTTAGAAATGGGGAAATGGAAGAGGAAGAAGAG
GAAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGACG
ACGACGACAAAAACGAAGCAGTAGGGTTGTGGACGTCATCCTCTCAGATA
TGGCGCCTGACTTATCTGGGGATAAGTTCCGAGATCATCGGCGAACGCTG
GATTTGGGTTATGAGGTGCTGGCCTTTGCTGACCGAGCCTTCCAAGAAAG
AAACAGCAGCAGCTCCAGCAGTGGCGCTGAAAGCAGGAAAGGCAGCAATA
AAAAGACTCTTCTCATCAAGCTGTTTAAAGGACGAGATGAGGAGGAGTTT
CTATCGCACGCCCGGGCCCGTTACAACGAGGTCCGATTGCTCAAGCCCAA
GGCATCGCGAATCGAAAGTGGGGAGCAGTATATGATGGCTCGCGATTTCA
AGGGTTTGTGCGGTTGTGGCAATGTGAGCGATGGAGCGGTGTAG
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Synonyms
Publications