NO08G03100.1, NO08G03100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03100.1
Unique NameNO08G03100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1783
Alignment locationchr8:856315..858097 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:856315..858097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G03100.1 vs.
Match: EWM26648.1 (hypothetical protein Naga_100001g217 [Nannochloropsis gaditana])

HSP 1 Score: 549.3 bits (1414), Expect = 1.000e-152
Identity = 286/386 (74.09%), Postives = 320/386 (82.90%), Query Frame = 0 
Query:    4 GMHLGEGGGQRLVGVKRDASTRSDDGGDSDREDDRKRRWMTKEQARACQQKFEEWHGSLRGKQEEVAHFSKGIGLSPLQVEKRFHYIRKHYDKVTKRLTTDETSRGRGFDLLTSGGGGTFGLCTGSTQISLVSRMNEWAQHELDSDRLMKMLIQLGASLRYQNTDEVLVRPSRHQITKLEGCKFFDAGFPPHLVVEPVSALASLDVMQELDLVWLGRRSGSEPFALFMLDSGLANSVSSVTKWVDVMLKGHHLPCFTIVPKGRMKPVKAQIGVPWMQALLTSVPGMGTTRLISEENLEYILSSDPKLLGNLAALDALELLYTLSESLVLPQQPPGLV----------------TVGQQQQQQQEQQQQQQQQQQQQQQPMITASVG 374
            G   G  GG R++G+KR  S+R +DGGDSDREDDRKRRWMTKEQARACQQKFEEW+GSLRGKQEEVA F+KGIGLS LQVEKRFHYIRKHYDKVTKRLTT+E+SRGRGF+LL SGGGG FG+CTGSTQI+L+SR+NEWAQHELDSDR+MKMLI L +++R++ TDEVLVRPSRHQITKLEGCKFFD G PPHLVVEP S  A +DV+QELDLVWLGRR+  EPFALFMLDSGLANSVSSVTKWVDV L+GHHLPCFTIVPKGRMKPVK QIGVPWMQAL+TSVPGMGTTRLISEENLEY+LSSD ++LGNL  LDALELLYTLSE LVLPQ PPG++                 +   +  +Q    + QQ QQ  QQP I    G
Sbjct:  485 GYQGGGAGGDRVLGMKRGLSSRYEDGGDSDREDDRKRRWMTKEQARACQQKFEEWNGSLRGKQEEVAQFAKGIGLSALQVEKRFHYIRKHYDKVTKRLTTEESSRGRGFELLNSGGGGIFGMCTGSTQIALISRVNEWAQHELDSDRMMKMLIHLASTVRHKETDEVLVRPSRHQITKLEGCKFFDGGVPPHLVVEPASTAAFVDVLQELDLVWLGRRTNPEPFALFMLDSGLANSVSSVTKWVDVRLRGHHLPCFTIVPKGRMKPVKTQIGVPWMQALMTSVPGMGTTRLISEENLEYVLSSDSQVLGNLMGLDALELLYTLSECLVLPQAPPGMLIADSAGGGGSGHQTVPLIAPLEHPRQAICPETQQSQQSHQQPQIQLQRG 870
The following BLAST results are available for this feature:
BLAST of NO08G03100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26648.11.000e-15274.09hypothetical protein Naga_100001g217 [Nannochlorop... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03100NO08G03100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03100.1NO08G03100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03100.1.cds1NO08G03100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03100.1 ID=NO08G03100.1|Name=NO08G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1783bp
ATGCATGGTGGTATGCATCTAGGAGAAGGGGGAGGACAGCGATTGGTTGG
TGTGAAGCGGGATGCATCCACCAGGTCGGACGATGGGGGGGACTCAGACA
GGGAGGACGATAGGAAGAGGAGATGGATGACAAAGGAGCAAGCACGGGCG
TGCCAGCAGAAGTTCGAGGAGTGGCATGGGAGTTTGAGAGGAAAGCAGGA
AGAAGTGGCTCATTTTTCGAAGGGCATTGGACTGTCGCCGTTGCAGGTGG
AGAAGAGGTTCCACTACATTCGGAAGCATTATGATAAAGTCACCAAGCGA
CTGACGACGGACGAGACCAGCAGGGGACGTGGGTTTGACTTGCTTACCTC
GGGGGGAGGAGGTACCTTCGGATTGTGCACGGGCTCGACGCAGATCTCCC
TTGTTTCGAGAATGAACGAGTGGGCGCAACACGAACTAGATTCGGATCGA
TTGATGAAGATGTTGATCCAATTAGGCGCTTCGTTGAGGTATCAAAACAC
AGACGAAGTCCTCGTGCGACCCTCCCGACATCAAATCACCAAGCTCGAGG
GTTGTAAGTTCTTCGACGCGGGTTTTCCCCCTCACTTGGTTGTGGAGCCA
GTGTCAGCCTTGGCCTCCTTGGACGTGATGCAAGAGCTGGATTTGGTTTG
GCTGGGTCGGAGATCGGGCTCGGAGCCGTTTGCTTTGTTTATGCTGGACA
GCGGGCTGGCGAATTCGGTGAGCAGTGTTACGAAATGGGTGGATGTCATG
TTGAAGGGCCACCATTTGCCCTGTTTCACCATCGTACCCAAGGGGAGGAT
GAAACCAGTCAAGGCCCAGATTGGGGTGCCCTGGATGCAGGCGCTGTTGA
CATCGGTACCGGGCATGGGAACCACCCGCTTGATTTCGGAGGAAAATTTG
GAATATATCCTGTCGTCTGATCCGAAGCTGCTAGGTAATTTAGCAGCGCT
TGACGCGTTAGAGCTCTTGTATACCCTGTCTGAGTCTCTGGTGTTGCCTC
AGCAACCCCCGGGACTTGTGACAGTTGGACAGCAGCAGCAACAGCAACAG
GAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCAT
GATAACTGCGAGCGTTGGAGGGTCGATGATAAGCGGAGGGACAGTTGCAG
CGTTTGGTGGCATGGGGGAGCACCAGCAGCAGCAGCAGAATAGGGGTTCC
GGGGGAGCTGGGGGCGATGGTGGCATCAACATGCACACATCTTTGTGAGC
AAAGATGATGGCAGGGAGGGTGGGAGGAAAAGAAAGAGTCCGTACACTCA
GCAAATAGTTTTACACTTGCATTCATACTCTTGCATTCTTACTAATGGTG
AGGCAAATTAGAAGGGATGTGGGCTTATCACAAGGGATGGATAGAGCGAG
GGAGGTGCGTAACTCACCTTGAAGCGCAACGACACATAATAGCCTTGCAG
AAGAAGACATTTAAGAAAAATGAAGTGACGGGGATGACATGAAAGCAGGT
GTAAAATGCCAGGACTGTAGGAGCAGCATATGCCAGCAGCAATGAGCAGT
GAACCAGCAGCAACAACAGAAAGAAATGTTTTAAAGAAAAATCCGCATGG
CGGCTGGGGGAGGGAATTAAATCGAGAGACTCAGTCATGGCCAACGAAGT
TGATGAGACCCATGACTGCAAGAACAGCGTCAGCGTCAGACCAATAATGC
GTAATAGAGAGATGATGAGAGAGTCTCAGCGACGAAGAAGTGAAAGCATA
AAAGTCCAACACAATCCAAGCGTACCAAAGTTC
back to top

protein sequence of NO08G03100.1

>NO08G03100.1-protein ID=NO08G03100.1-protein|Name=NO08G03100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MHGGMHLGEGGGQRLVGVKRDASTRSDDGGDSDREDDRKRRWMTKEQARA
CQQKFEEWHGSLRGKQEEVAHFSKGIGLSPLQVEKRFHYIRKHYDKVTKR
LTTDETSRGRGFDLLTSGGGGTFGLCTGSTQISLVSRMNEWAQHELDSDR
LMKMLIQLGASLRYQNTDEVLVRPSRHQITKLEGCKFFDAGFPPHLVVEP
VSALASLDVMQELDLVWLGRRSGSEPFALFMLDSGLANSVSSVTKWVDVM
LKGHHLPCFTIVPKGRMKPVKAQIGVPWMQALLTSVPGMGTTRLISEENL
EYILSSDPKLLGNLAALDALELLYTLSESLVLPQQPPGLVTVGQQQQQQQ
EQQQQQQQQQQQQQQPMITASVGGSMISGGTVAAFGGMGEHQQQQQNRGS
GGAGGDGGINMHTSL*
back to top

mRNA from alignment at chr8:856315..858097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03100.1 ID=NO08G03100.1|Name=NO08G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1783bp|location=Sequence derived from alignment at chr8:856315..858097- (Nannochloropsis oceanica)
ATGCATGGTGGTATGCATCTAGGAGAAGGGGGAGGACAGCGATTGGTTGG
TGTGAAGCGGGATGCATCCACCAGGTCGGACGATGGGGGGGACTCAGACA
GGGAGGACGATAGGAAGAGGAGATGGATGACAAAGGAGCAAGCACGGGCG
TGCCAGCAGAAGTTCGAGGAGTGGCATGGGAGTTTGAGAGGAAAGCAGGA
AGAAGTGGCTCATTTTTCGAAGGGCATTGGACTGTCGCCGTTGCAGGTGG
AGAAGAGGTTCCACTACATTCGGAAGCATTATGATAAAGTCACCAAGCGA
CTGACGACGGACGAGACCAGCAGGGGACGTGGGTTTGACTTGCTTACCTC
GGGGGGAGGAGGTACCTTCGGATTGTGCACGGGCTCGACGCAGATCTCCC
TTGTTTCGAGAATGAACGAGTGGGCGCAACACGAACTAGATTCGGATCGA
TTGATGAAGATGTTGATCCAATTAGGCGCTTCGTTGAGGTATCAAAACAC
AGACGAAGTCCTCGTGCGACCCTCCCGACATCAAATCACCAAGCTCGAGG
GTTGTAAGTTCTTCGACGCGGGTTTTCCCCCTCACTTGGTTGTGGAGCCA
GTGTCAGCCTTGGCCTCCTTGGACGTGATGCAAGAGCTGGATTTGGTTTG
GCTGGGTCGGAGATCGGGCTCGGAGCCGTTTGCTTTGTTTATGCTGGACA
GCGGGCTGGCGAATTCGGTGAGCAGTGTTACGAAATGGGTGGATGTCATG
TTGAAGGGCCACCATTTGCCCTGTTTCACCATCGTACCCAAGGGGAGGAT
GAAACCAGTCAAGGCCCAGATTGGGGTGCCCTGGATGCAGGCGCTGTTGA
CATCGGTACCGGGCATGGGAACCACCCGCTTGATTTCGGAGGAAAATTTG
GAATATATCCTGTCGTCTGATCCGAAGCTGCTAGGTAATTTAGCAGCGCT
TGACGCGTTAGAGCTCTTGTATACCCTGTCTGAGTCTCTGGTGTTGCCTC
AGCAACCCCCGGGACTTGTGACAGTTGGACAGCAGCAGCAACAGCAACAG
GAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCAT
GATAACTGCGAGCGTTGGAGGGTCGATGATAAGCGGAGGGACAGTTGCAG
CGTTTGGTGGCATGGGGGAGCACCAGCAGCAGCAGCAGAATAGGGGTTCC
GGGGGAGCTGGGGGCGATGGTGGCATCAACATGCACACATCTTTGTGAGC
AAAGATGATGGCAGGGAGGGTGGGAGGAAAAGAAAGAGTCCGTACACTCA
GCAAATAGTTTTACACTTGCATTCATACTCTTGCATTCTTACTAATGGTG
AGGCAAATTAGAAGGGATGTGGGCTTATCACAAGGGATGGATAGAGCGAG
GGAGGTGCGTAACTCACCTTGAAGCGCAACGACACATAATAGCCTTGCAG
AAGAAGACATTTAAGAAAAATGAAGTGACGGGGATGACATGAAAGCAGGT
GTAAAATGCCAGGACTGTAGGAGCAGCATATGCCAGCAGCAATGAGCAGT
GAACCAGCAGCAACAACAGAAAGAAATGTTTTAAAGAAAAATCCGCATGG
CGGCTGGGGGAGGGAATTAAATCGAGAGACTCAGTCATGGCCAACGAAGT
TGATGAGACCCATGACTGCAAGAACAGCGTCAGCGTCAGACCAATAATGC
GTAATAGAGAGATGATGAGAGAGTCTCAGCGACGAAGAAGTGAAAGCATA
AAAGTCCAACACAATCCAAGCGTACCAAAGTTC
back to top

Coding sequence (CDS) from alignment at chr8:856315..858097-

>NO08G03100.1 ID=NO08G03100.1|Name=NO08G03100.1|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at chr8:856315..858097- (Nannochloropsis oceanica)
ATGCATGGTGGTATGCATCTAGGAGAAGGGGGAGGACAGCGATTGGTTGG
TGTGAAGCGGGATGCATCCACCAGGTCGGACGATGGGGGGGACTCAGACA
GGGAGGACGATAGGAAGAGGAGATGGATGACAAAGGAGCAAGCACGGGCG
TGCCAGCAGAAGTTCGAGGAGTGGCATGGGAGTTTGAGAGGAAAGCAGGA
AGAAGTGGCTCATTTTTCGAAGGGCATTGGACTGTCGCCGTTGCAGGTGG
AGAAGAGGTTCCACTACATTCGGAAGCATTATGATAAAGTCACCAAGCGA
CTGACGACGGACGAGACCAGCAGGGGACGTGGGTTTGACTTGCTTACCTC
GGGGGGAGGAGGTACCTTCGGATTGTGCACGGGCTCGACGCAGATCTCCC
TTGTTTCGAGAATGAACGAGTGGGCGCAACACGAACTAGATTCGGATCGA
TTGATGAAGATGTTGATCCAATTAGGCGCTTCGTTGAGGTATCAAAACAC
AGACGAAGTCCTCGTGCGACCCTCCCGACATCAAATCACCAAGCTCGAGG
GTTGTAAGTTCTTCGACGCGGGTTTTCCCCCTCACTTGGTTGTGGAGCCA
GTGTCAGCCTTGGCCTCCTTGGACGTGATGCAAGAGCTGGATTTGGTTTG
GCTGGGTCGGAGATCGGGCTCGGAGCCGTTTGCTTTGTTTATGCTGGACA
GCGGGCTGGCGAATTCGGTGAGCAGTGTTACGAAATGGGTGGATGTCATG
TTGAAGGGCCACCATTTGCCCTGTTTCACCATCGTACCCAAGGGGAGGAT
GAAACCAGTCAAGGCCCAGATTGGGGTGCCCTGGATGCAGGCGCTGTTGA
CATCGGTACCGGGCATGGGAACCACCCGCTTGATTTCGGAGGAAAATTTG
GAATATATCCTGTCGTCTGATCCGAAGCTGCTAGGTAATTTAGCAGCGCT
TGACGCGTTAGAGCTCTTGTATACCCTGTCTGAGTCTCTGGTGTTGCCTC
AGCAACCCCCGGGACTTGTGACAGTTGGACAGCAGCAGCAACAGCAACAG
GAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCAT
GATAACTGCGAGCGTTGGAGGGTCGATGATAAGCGGAGGGACAGTTGCAG
CGTTTGGTGGCATGGGGGAGCACCAGCAGCAGCAGCAGAATAGGGGTTCC
GGGGGAGCTGGGGGCGATGGTGGCATCAACATGCACACATCTTTGTGA
back to top
Synonyms
Publications