NO08G03060.1, NO08G03060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03060.1
Unique NameNO08G03060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1035
Alignment locationchr8:850298..851332 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:850298..851332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03060.1 vs.
Match: EWM26700.1 (type ii inositol- -trisphosphate 5-phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 246.1 bits (627), Expect = 1.600e-61
Identity = 148/289 (51.21%), Postives = 177/289 (61.25%), Query Frame = 0 
Query:   55 ATTWAELLQDDELKQGMDIGDLFYGFQEGKIRLPPSYRRAKGLNGECGDYTDAGELKKAFSTAVKEKSRPLHSLNRGLT--HKLYRGLDNFGHSKKHRLQQEQQEQQEQQEQVYTSKGISFDIRLAESCRVDSSLRSLEVEGEVVVGAGGGVGGLEGGR-GDMSWVSMRATTGMTMTTPNYSGNSSTRISAPIPSYTDRILLHVVEDFRDRPSLGPYEICDALVHSDHRPVSTLVTARVNVGVRGLNACQQASEILHDPTVVQGRDIVTAHDACFYLLELTDVRVELFA 341
            A++W +LL+DDE++QGM+ G +FYGFQEGKIR PPSYRR KG +GECGDY D   LK A+ST VKEK+  L  LNRGL      YR L            Q  +EQ   +   Y S G        ES    +  RS           G G+   E GR G+    S RA  G          +++TRI    PSYTDRILLHVVEDF+DR  LGPYE+CDAL  SDHRPVSTLVTARVNV VRGLN+  QA   L +P++V  RD++T HDACFY+LELTD+RVEL A
Sbjct:  792 ASSWEQLLRDDEMRQGMEKGAIFYGFQEGKIRFPPSYRRIKGPHGECGDYCDVETLKTAYSTVVKEKTLSLKKLNRGLRILAPYYRFLQRDSQG------QALEEQSSSRTPSYASSGW-------ESSSTRAFSRSYN---------GSGMENGEDGRDGEDVSASSRAPAG----AKKVQRHATTRI----PSYTDRILLHVVEDFKDRIRLGPYEMCDALQGSDHRPVSTLVTARVNVAVRGLNSFHQAKSCLQNPSIVHNRDVITVHDACFYILELTDLRVELLA 1050
The following BLAST results are available for this feature:
BLAST of NO08G03060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26700.11.600e-6151.21type ii inositol- -trisphosphate 5-phosphatase [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03060NO08G03060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03060.1NO08G03060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03060.1.cds1NO08G03060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03060.1 ID=NO08G03060.1|Name=NO08G03060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp
ATGTTCTCCTTCATGGCCTTCCTCTCAACAAGGCGTTCTGACCCCCACTG
TTCCGCAGCTATCAGCAGGAGCCCCTTTGGGCGGATCGTGGGGTCCTCCT
GTACCCTCCTCCGAGGGCGCAAACCGACTTTTACATCACAATCGCCCATG
GTGTCACAGAAAGCGACAACTTGGGCAGAGCTTTTGCAGGATGATGAATT
GAAGCAAGGGATGGATATAGGTGATTTGTTCTATGGATTCCAAGAAGGGA
AGATCCGCCTTCCTCCTTCTTATCGGCGCGCCAAAGGCCTAAATGGCGAG
TGTGGGGATTATACAGATGCTGGTGAATTGAAAAAGGCATTTAGCACTGC
TGTCAAGGAAAAATCACGGCCCCTGCACAGTCTAAATCGTGGCCTGACCC
ATAAACTGTATCGTGGCTTGGATAATTTTGGCCATTCAAAGAAGCATAGG
TTGCAGCAAGAGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGGTGTATAC
CAGCAAAGGCATTTCGTTTGACATCCGTCTGGCGGAATCCTGTCGTGTGG
ATAGCAGCCTTCGATCGCTGGAGGTGGAGGGTGAAGTTGTCGTCGGTGCA
GGCGGGGGAGTGGGAGGATTGGAAGGAGGTAGAGGAGATATGTCTTGGGT
ATCTATGAGGGCTACAACAGGGATGACAATGACGACTCCTAACTATAGCG
GTAACAGCAGCACACGAATATCTGCCCCTATTCCATCATACACCGATCGA
ATCTTGCTGCACGTGGTGGAGGACTTTCGAGACCGACCTTCTCTTGGTCC
ATACGAGATATGCGATGCCCTTGTACACTCGGACCACAGGCCTGTATCTA
CTCTTGTAACTGCTCGAGTGAATGTGGGCGTAAGGGGGCTCAACGCATGT
CAGCAGGCAAGCGAAATCCTGCACGATCCGACGGTTGTTCAAGGGAGGGA
TATCGTGACGGCACATGATGCGTGTTTCTATTTATTGGAGTTGACGGACG
TGAGGGTCGAATTGTTCGCGGGGGGTTTGACCTGA
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protein sequence of NO08G03060.1

>NO08G03060.1-protein ID=NO08G03060.1-protein|Name=NO08G03060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MFSFMAFLSTRRSDPHCSAAISRSPFGRIVGSSCTLLRGRKPTFTSQSPM
VSQKATTWAELLQDDELKQGMDIGDLFYGFQEGKIRLPPSYRRAKGLNGE
CGDYTDAGELKKAFSTAVKEKSRPLHSLNRGLTHKLYRGLDNFGHSKKHR
LQQEQQEQQEQQEQVYTSKGISFDIRLAESCRVDSSLRSLEVEGEVVVGA
GGGVGGLEGGRGDMSWVSMRATTGMTMTTPNYSGNSSTRISAPIPSYTDR
ILLHVVEDFRDRPSLGPYEICDALVHSDHRPVSTLVTARVNVGVRGLNAC
QQASEILHDPTVVQGRDIVTAHDACFYLLELTDVRVELFAGGLT*
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mRNA from alignment at chr8:850298..851332+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03060.1 ID=NO08G03060.1|Name=NO08G03060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp|location=Sequence derived from alignment at chr8:850298..851332+ (Nannochloropsis oceanica)
ATGTTCTCCTTCATGGCCTTCCTCTCAACAAGGCGTTCTGACCCCCACTG
TTCCGCAGCTATCAGCAGGAGCCCCTTTGGGCGGATCGTGGGGTCCTCCT
GTACCCTCCTCCGAGGGCGCAAACCGACTTTTACATCACAATCGCCCATG
GTGTCACAGAAAGCGACAACTTGGGCAGAGCTTTTGCAGGATGATGAATT
GAAGCAAGGGATGGATATAGGTGATTTGTTCTATGGATTCCAAGAAGGGA
AGATCCGCCTTCCTCCTTCTTATCGGCGCGCCAAAGGCCTAAATGGCGAG
TGTGGGGATTATACAGATGCTGGTGAATTGAAAAAGGCATTTAGCACTGC
TGTCAAGGAAAAATCACGGCCCCTGCACAGTCTAAATCGTGGCCTGACCC
ATAAACTGTATCGTGGCTTGGATAATTTTGGCCATTCAAAGAAGCATAGG
TTGCAGCAAGAGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGGTGTATAC
CAGCAAAGGCATTTCGTTTGACATCCGTCTGGCGGAATCCTGTCGTGTGG
ATAGCAGCCTTCGATCGCTGGAGGTGGAGGGTGAAGTTGTCGTCGGTGCA
GGCGGGGGAGTGGGAGGATTGGAAGGAGGTAGAGGAGATATGTCTTGGGT
ATCTATGAGGGCTACAACAGGGATGACAATGACGACTCCTAACTATAGCG
GTAACAGCAGCACACGAATATCTGCCCCTATTCCATCATACACCGATCGA
ATCTTGCTGCACGTGGTGGAGGACTTTCGAGACCGACCTTCTCTTGGTCC
ATACGAGATATGCGATGCCCTTGTACACTCGGACCACAGGCCTGTATCTA
CTCTTGTAACTGCTCGAGTGAATGTGGGCGTAAGGGGGCTCAACGCATGT
CAGCAGGCAAGCGAAATCCTGCACGATCCGACGGTTGTTCAAGGGAGGGA
TATCGTGACGGCACATGATGCGTGTTTCTATTTATTGGAGTTGACGGACG
TGAGGGTCGAATTGTTCGCGGGGGGTTTGACCTGA
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Coding sequence (CDS) from alignment at chr8:850298..851332+

>NO08G03060.1 ID=NO08G03060.1|Name=NO08G03060.1|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at chr8:850298..851332+ (Nannochloropsis oceanica)
ATGTTCTCCTTCATGGCCTTCCTCTCAACAAGGCGTTCTGACCCCCACTG
TTCCGCAGCTATCAGCAGGAGCCCCTTTGGGCGGATCGTGGGGTCCTCCT
GTACCCTCCTCCGAGGGCGCAAACCGACTTTTACATCACAATCGCCCATG
GTGTCACAGAAAGCGACAACTTGGGCAGAGCTTTTGCAGGATGATGAATT
GAAGCAAGGGATGGATATAGGTGATTTGTTCTATGGATTCCAAGAAGGGA
AGATCCGCCTTCCTCCTTCTTATCGGCGCGCCAAAGGCCTAAATGGCGAG
TGTGGGGATTATACAGATGCTGGTGAATTGAAAAAGGCATTTAGCACTGC
TGTCAAGGAAAAATCACGGCCCCTGCACAGTCTAAATCGTGGCCTGACCC
ATAAACTGTATCGTGGCTTGGATAATTTTGGCCATTCAAAGAAGCATAGG
TTGCAGCAAGAGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGGTGTATAC
CAGCAAAGGCATTTCGTTTGACATCCGTCTGGCGGAATCCTGTCGTGTGG
ATAGCAGCCTTCGATCGCTGGAGGTGGAGGGTGAAGTTGTCGTCGGTGCA
GGCGGGGGAGTGGGAGGATTGGAAGGAGGTAGAGGAGATATGTCTTGGGT
ATCTATGAGGGCTACAACAGGGATGACAATGACGACTCCTAACTATAGCG
GTAACAGCAGCACACGAATATCTGCCCCTATTCCATCATACACCGATCGA
ATCTTGCTGCACGTGGTGGAGGACTTTCGAGACCGACCTTCTCTTGGTCC
ATACGAGATATGCGATGCCCTTGTACACTCGGACCACAGGCCTGTATCTA
CTCTTGTAACTGCTCGAGTGAATGTGGGCGTAAGGGGGCTCAACGCATGT
CAGCAGGCAAGCGAAATCCTGCACGATCCGACGGTTGTTCAAGGGAGGGA
TATCGTGACGGCACATGATGCGTGTTTCTATTTATTGGAGTTGACGGACG
TGAGGGTCGAATTGTTCGCGGGGGGTTTGACCTGA
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Synonyms
Publications