NO08G03010.1, NO08G03010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03010.1
Unique NameNO08G03010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1056
Alignment locationchr8:836984..838039 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:836984..838039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03010.1 vs.
Match: EWM26643.1 (hypothetical protein Naga_100001g209 [Nannochloropsis gaditana])

HSP 1 Score: 65.1 bits (157), Expect = 5.000e-7
Identity = 112/394 (28.43%), Postives = 162/394 (41.12%), Query Frame = 0 
Query:   10 ARELLKHAICTALAAQEEMRAL----------------------------RERNGNEQVKCHGGSL--------------RTSSDDDGSQGMEDQSTFYNKKIVSPPPASNNRSLRH-------NDGGDGAVRPRRPKERRMRSIDQGDVDKEEYEKMQLQQSRDSFPSLSNSVSSSFLTIKQKQRDAKLHELKARVERLLLREEHIDVVESKENEQDEDIYLNERERHSMIQGGDLVIPSHVPAESRRNASPPSPPQPARCLLHLHSESRIDHHP-ISSKDAALST---SSLFSSSSSPTLLERALAAKRRAKLLSASGASSSSPSSSTLTSYNTPTEAAPTAPAVTGASTIQVSFDASRQSWQQQSTASSIHHDAWVWPRLTEDEMQDANAK 351
            AR+LLK AI TA AA+EEMRAL                               + N  V+    +L              RT  D+DG  G ++++   N      P A+ N  ++        +  G+G          R +      +    +  + +  +   FP ++ S +      +Q+ R+AKLH LKARVE+LLLREE     E K   +                     + S +P +  R  SP S P+ ++   H+ S +   + P +   D  L     + +FS+SS  TLLERA+A KRR K   AS + S +  S    S    +EA   AP   G+               Q STAS+  HDAWVWPRLT++EM  A  K
Sbjct:   19 ARKLLKQAIDTAQAAREEMRALQEQAVDRGGFSRSIPHGYLVGTDNTKLDNFYDSNYGVEFVSKALPLPGETGSYKHDVARTHRDNDGRIGGQNRNKLANYGAGDVPNANKNVGMQQQLKNEKVHGKGEGEFHIDDTNSYRSQRASSPPLSASSHRNL-ISDAHQMFPCIAASHAPCSSLDEQRPRNAKLHALKARVEKLLLREEKNRKGEIKVRRE---------------------VMSGIPDDLDRGRSPWSSPKSSQ---HIDSPTSDTNMPNVPDVDRRLEDGPGAPVFSASS--TLLERAIAEKRREK--RASFSLSRTSESQLPRSLLPNSEAVEDAPRNLGSC--------------QSSTASATWHDAWVWPRLTKEEMHAARQK 369
The following BLAST results are available for this feature:
BLAST of NO08G03010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26643.15.000e-728.43hypothetical protein Naga_100001g209 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03010NO08G03010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03010.1NO08G03010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03010.1.cds1NO08G03010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03010.1 ID=NO08G03010.1|Name=NO08G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp
ATGCCGAACCCGCACCTCGAAGCGAAGGCGCGGGAGCTTCTCAAGCATGC
AATCTGTACAGCGCTAGCCGCCCAAGAGGAGATGCGCGCTCTGCGGGAGA
GGAATGGCAATGAGCAAGTGAAATGCCATGGCGGCAGCCTCCGTACGTCC
AGCGACGACGATGGTAGTCAGGGAATGGAAGATCAAAGCACTTTCTACAA
CAAGAAGATTGTCTCCCCGCCACCCGCCTCGAACAATAGGAGTCTGCGCC
ATAATGATGGTGGTGATGGCGCGGTGCGGCCTCGGCGTCCGAAAGAACGG
AGGATGAGAAGCATTGACCAAGGCGATGTGGACAAGGAGGAATACGAAAA
GATGCAACTACAACAGTCGCGGGATTCTTTCCCTTCTCTATCAAATTCCG
TTTCGTCCTCTTTCTTGACCATAAAGCAGAAACAGCGGGACGCAAAGCTT
CACGAGCTCAAGGCACGCGTCGAGCGATTGCTTCTCCGGGAAGAGCATAT
AGACGTGGTGGAGAGTAAAGAAAATGAACAGGACGAGGATATATATCTCA
ATGAGAGGGAAAGACACTCCATGATCCAAGGGGGCGATCTCGTCATCCCA
TCACATGTCCCGGCCGAGAGTCGGCGAAACGCGTCTCCCCCCTCTCCACC
GCAACCCGCAAGATGCCTACTCCATCTGCATTCCGAATCTAGGATTGATC
ATCACCCCATATCATCGAAAGATGCCGCCCTCTCTACCTCCTCCTTATTC
TCCTCCTCCTCTTCACCCACCCTACTCGAACGCGCCCTAGCTGCAAAACG
ACGGGCAAAACTGCTCTCTGCTTCTGGCGCCTCTTCCTCCTCACCCTCTT
CCTCCACCTTAACGTCATACAATACGCCAACAGAAGCAGCACCAACAGCA
CCAGCGGTAACAGGGGCATCAACGATACAAGTAAGTTTTGATGCGTCCAG
GCAGTCGTGGCAGCAACAAAGTACGGCGAGTAGCATACATCACGACGCAT
GGGTCTGGCCTCGTTTGACGGAGGATGAAATGCAGGATGCAAATGCAAAG
CGATAG
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protein sequence of NO08G03010.1

>NO08G03010.1-protein ID=NO08G03010.1-protein|Name=NO08G03010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MPNPHLEAKARELLKHAICTALAAQEEMRALRERNGNEQVKCHGGSLRTS
SDDDGSQGMEDQSTFYNKKIVSPPPASNNRSLRHNDGGDGAVRPRRPKER
RMRSIDQGDVDKEEYEKMQLQQSRDSFPSLSNSVSSSFLTIKQKQRDAKL
HELKARVERLLLREEHIDVVESKENEQDEDIYLNERERHSMIQGGDLVIP
SHVPAESRRNASPPSPPQPARCLLHLHSESRIDHHPISSKDAALSTSSLF
SSSSSPTLLERALAAKRRAKLLSASGASSSSPSSSTLTSYNTPTEAAPTA
PAVTGASTIQVSFDASRQSWQQQSTASSIHHDAWVWPRLTEDEMQDANAK
R*
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mRNA from alignment at chr8:836984..838039+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03010.1 ID=NO08G03010.1|Name=NO08G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp|location=Sequence derived from alignment at chr8:836984..838039+ (Nannochloropsis oceanica)
ATGCCGAACCCGCACCTCGAAGCGAAGGCGCGGGAGCTTCTCAAGCATGC
AATCTGTACAGCGCTAGCCGCCCAAGAGGAGATGCGCGCTCTGCGGGAGA
GGAATGGCAATGAGCAAGTGAAATGCCATGGCGGCAGCCTCCGTACGTCC
AGCGACGACGATGGTAGTCAGGGAATGGAAGATCAAAGCACTTTCTACAA
CAAGAAGATTGTCTCCCCGCCACCCGCCTCGAACAATAGGAGTCTGCGCC
ATAATGATGGTGGTGATGGCGCGGTGCGGCCTCGGCGTCCGAAAGAACGG
AGGATGAGAAGCATTGACCAAGGCGATGTGGACAAGGAGGAATACGAAAA
GATGCAACTACAACAGTCGCGGGATTCTTTCCCTTCTCTATCAAATTCCG
TTTCGTCCTCTTTCTTGACCATAAAGCAGAAACAGCGGGACGCAAAGCTT
CACGAGCTCAAGGCACGCGTCGAGCGATTGCTTCTCCGGGAAGAGCATAT
AGACGTGGTGGAGAGTAAAGAAAATGAACAGGACGAGGATATATATCTCA
ATGAGAGGGAAAGACACTCCATGATCCAAGGGGGCGATCTCGTCATCCCA
TCACATGTCCCGGCCGAGAGTCGGCGAAACGCGTCTCCCCCCTCTCCACC
GCAACCCGCAAGATGCCTACTCCATCTGCATTCCGAATCTAGGATTGATC
ATCACCCCATATCATCGAAAGATGCCGCCCTCTCTACCTCCTCCTTATTC
TCCTCCTCCTCTTCACCCACCCTACTCGAACGCGCCCTAGCTGCAAAACG
ACGGGCAAAACTGCTCTCTGCTTCTGGCGCCTCTTCCTCCTCACCCTCTT
CCTCCACCTTAACGTCATACAATACGCCAACAGAAGCAGCACCAACAGCA
CCAGCGGTAACAGGGGCATCAACGATACAAGTAAGTTTTGATGCGTCCAG
GCAGTCGTGGCAGCAACAAAGTACGGCGAGTAGCATACATCACGACGCAT
GGGTCTGGCCTCGTTTGACGGAGGATGAAATGCAGGATGCAAATGCAAAG
CGATAG
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Coding sequence (CDS) from alignment at chr8:836984..838039+

>NO08G03010.1 ID=NO08G03010.1|Name=NO08G03010.1|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at chr8:836984..838039+ (Nannochloropsis oceanica)
ATGCCGAACCCGCACCTCGAAGCGAAGGCGCGGGAGCTTCTCAAGCATGC
AATCTGTACAGCGCTAGCCGCCCAAGAGGAGATGCGCGCTCTGCGGGAGA
GGAATGGCAATGAGCAAGTGAAATGCCATGGCGGCAGCCTCCGTACGTCC
AGCGACGACGATGGTAGTCAGGGAATGGAAGATCAAAGCACTTTCTACAA
CAAGAAGATTGTCTCCCCGCCACCCGCCTCGAACAATAGGAGTCTGCGCC
ATAATGATGGTGGTGATGGCGCGGTGCGGCCTCGGCGTCCGAAAGAACGG
AGGATGAGAAGCATTGACCAAGGCGATGTGGACAAGGAGGAATACGAAAA
GATGCAACTACAACAGTCGCGGGATTCTTTCCCTTCTCTATCAAATTCCG
TTTCGTCCTCTTTCTTGACCATAAAGCAGAAACAGCGGGACGCAAAGCTT
CACGAGCTCAAGGCACGCGTCGAGCGATTGCTTCTCCGGGAAGAGCATAT
AGACGTGGTGGAGAGTAAAGAAAATGAACAGGACGAGGATATATATCTCA
ATGAGAGGGAAAGACACTCCATGATCCAAGGGGGCGATCTCGTCATCCCA
TCACATGTCCCGGCCGAGAGTCGGCGAAACGCGTCTCCCCCCTCTCCACC
GCAACCCGCAAGATGCCTACTCCATCTGCATTCCGAATCTAGGATTGATC
ATCACCCCATATCATCGAAAGATGCCGCCCTCTCTACCTCCTCCTTATTC
TCCTCCTCCTCTTCACCCACCCTACTCGAACGCGCCCTAGCTGCAAAACG
ACGGGCAAAACTGCTCTCTGCTTCTGGCGCCTCTTCCTCCTCACCCTCTT
CCTCCACCTTAACGTCATACAATACGCCAACAGAAGCAGCACCAACAGCA
CCAGCGGTAACAGGGGCATCAACGATACAAGTAAGTTTTGATGCGTCCAG
GCAGTCGTGGCAGCAACAAAGTACGGCGAGTAGCATACATCACGACGCAT
GGGTCTGGCCTCGTTTGACGGAGGATGAAATGCAGGATGCAAATGCAAAG
CGATAG
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Synonyms
Publications